HEADER TRANSCRIPTION 05-APR-07 2YT5 TITLE SOLUTION STRUCTURE OF THE PHD DOMAIN OF METAL-RESPONSE ELEMENT-BINDING TITLE 2 TRANSCRIPTION FACTOR 2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: METAL-RESPONSE ELEMENT-BINDING TRANSCRIPTION FACTOR 2; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: PHD DOMAIN; COMPND 5 SYNONYM: ZINC-REGULATED FACTOR 1, ZIRF1, METAL-RESPONSE ELEMENT DNA- COMPND 6 BINDING PROTEIN M96, METAL-REGULATORY TRANSCRIPTION FACTOR 2, PCL2; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: MTF2; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P061010-06; SOURCE 8 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS KEYWDS PHD DOMAIN, METAL-RESPONSE ELEMENT-BINDING TRANSCRIPTION FACTOR 2, KEYWDS 2 ZINC-REGULATED FACTOR 1, ZIRF1, METAL-RESPONSE ELEMENT DNA-BINDING KEYWDS 3 PROTEIN M96, METAL-REGULATORY TRANSCRIPTION FACTOR 2, PCL2, KEYWDS 4 STRUCTURAL GENOMICS, NPPSFA, NATIONAL PROJECT ON PROTEIN STRUCTURAL KEYWDS 5 AND FUNCTIONAL ANALYSES, RIKEN STRUCTURAL GENOMICS/PROTEOMICS KEYWDS 6 INITIATIVE, RSGI, TRANSCRIPTION EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR K.MASUDA,Y.MUTO,K.ISONO,S.WATANABE,T.HARADA,T.KIGAWA,H.KOSEKI, AUTHOR 2 S.YOKOYAMA,RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE (RSGI) REVDAT 3 16-MAR-22 2YT5 1 REMARK SEQADV REVDAT 2 24-FEB-09 2YT5 1 VERSN REVDAT 1 15-APR-08 2YT5 0 JRNL AUTH K.MASUDA,Y.MUTO,K.ISONO,S.WATANABE,T.HARADA,T.KIGAWA, JRNL AUTH 2 H.KOSEKI,S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF THE PHD DOMAIN OF METAL-RESPONSE JRNL TITL 2 ELEMENT-BINDING TRANSCRIPTION FACTOR 2 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XWINNMR 3.5, CYANA 2.0.17 REMARK 3 AUTHORS : BRUKER (XWINNMR), GUNTERT, P. (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2YT5 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 25-JUN-07. REMARK 100 THE DEPOSITION ID IS D_1000027101. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.0MM 13C, 15N-LABELED PROTEIN; REMARK 210 20MM D-TRIS-HCL (PH 7.0); 100MM REMARK 210 NACL; 1MM D-DTT; 0.02% NAN3; 90% REMARK 210 H2O, 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY; 3D_15N REMARK 210 -SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 20030801, NMRVIEW 5.0.4, REMARK 210 KUJIRA 0.9820, CYANA 2.0.17 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS, STRUCTURES REMARK 210 WITH THE LOWEST ENERGY, TARGET REMARK 210 FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 3 118.02 -161.20 REMARK 500 1 GLU A 18 105.34 -160.90 REMARK 500 1 ALA A 19 161.34 -47.33 REMARK 500 1 ASN A 21 42.54 -89.65 REMARK 500 1 LYS A 28 -74.03 -75.07 REMARK 500 1 CYS A 55 170.56 -59.34 REMARK 500 1 PHE A 60 -37.55 -38.83 REMARK 500 1 ALA A 61 40.58 -84.53 REMARK 500 1 LYS A 65 79.65 -100.76 REMARK 500 2 SER A 5 103.82 -52.76 REMARK 500 2 SER A 6 155.56 -47.37 REMARK 500 2 CYS A 9 170.85 -57.30 REMARK 500 2 GLU A 18 117.81 -175.22 REMARK 500 2 ASN A 21 47.78 -93.84 REMARK 500 2 LYS A 28 -76.35 -73.49 REMARK 500 2 PHE A 60 -31.60 -35.40 REMARK 500 2 ALA A 61 42.54 -82.66 REMARK 500 3 GLU A 18 114.77 -169.42 REMARK 500 3 ASN A 21 57.80 -94.61 REMARK 500 3 LYS A 28 -74.70 -71.93 REMARK 500 3 CYS A 37 -60.05 -90.17 REMARK 500 3 HIS A 38 157.93 -49.15 REMARK 500 3 THR A 62 44.67 -83.41 REMARK 500 4 ASN A 21 48.27 -93.18 REMARK 500 4 LYS A 28 -75.40 -78.01 REMARK 500 4 HIS A 34 170.19 -55.60 REMARK 500 4 CYS A 37 -62.25 -91.15 REMARK 500 4 HIS A 38 166.33 -44.35 REMARK 500 4 ASP A 50 30.24 -91.47 REMARK 500 4 PHE A 60 -36.24 -35.73 REMARK 500 4 THR A 64 97.62 -57.04 REMARK 500 5 ASN A 21 49.04 -88.82 REMARK 500 5 LYS A 28 -75.27 -74.43 REMARK 500 5 HIS A 34 159.92 -49.36 REMARK 500 5 ASP A 50 41.88 -83.03 REMARK 500 5 GLN A 57 -38.42 -35.55 REMARK 500 5 THR A 62 145.78 -173.83 REMARK 500 6 SER A 3 135.33 -34.46 REMARK 500 6 SER A 6 42.81 -102.95 REMARK 500 6 PRO A 20 0.29 -69.75 REMARK 500 6 ASN A 21 48.18 -91.71 REMARK 500 6 LYS A 28 -73.44 -73.84 REMARK 500 6 GLN A 57 -34.81 -37.77 REMARK 500 6 ALA A 61 95.13 -65.72 REMARK 500 6 THR A 62 124.02 -172.28 REMARK 500 7 SER A 6 69.43 -108.24 REMARK 500 7 CYS A 9 170.75 -53.71 REMARK 500 7 ASN A 21 52.50 -96.38 REMARK 500 7 LYS A 28 -75.24 -72.40 REMARK 500 7 THR A 63 103.05 -53.91 REMARK 500 REMARK 500 THIS ENTRY HAS 120 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 201 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 9 SG REMARK 620 2 CYS A 12 SG 111.6 REMARK 620 3 HIS A 34 ND1 96.0 100.3 REMARK 620 4 CYS A 37 SG 115.6 115.8 114.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 26 SG REMARK 620 2 CYS A 29 SG 112.7 REMARK 620 3 CYS A 55 SG 118.7 106.9 REMARK 620 4 CYS A 58 SG 112.0 101.9 102.9 REMARK 620 N 1 2 3 REMARK 650 REMARK 650 HELIX REMARK 650 DETERMINATION METHOD: AUTHOR DETERMINED REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 401 DBREF 2YT5 A 8 66 UNP Q02395 MTF2_MOUSE 104 162 SEQADV 2YT5 GLY A 1 UNP Q02395 EXPRESSION TAG SEQADV 2YT5 SER A 2 UNP Q02395 EXPRESSION TAG SEQADV 2YT5 SER A 3 UNP Q02395 EXPRESSION TAG SEQADV 2YT5 GLY A 4 UNP Q02395 EXPRESSION TAG SEQADV 2YT5 SER A 5 UNP Q02395 EXPRESSION TAG SEQADV 2YT5 SER A 6 UNP Q02395 EXPRESSION TAG SEQADV 2YT5 GLY A 7 UNP Q02395 EXPRESSION TAG SEQRES 1 A 66 GLY SER SER GLY SER SER GLY VAL CYS THR ILE CYS GLN SEQRES 2 A 66 GLU GLU TYR SER GLU ALA PRO ASN GLU MET VAL ILE CYS SEQRES 3 A 66 ASP LYS CYS GLY GLN GLY TYR HIS GLN LEU CYS HIS THR SEQRES 4 A 66 PRO HIS ILE ASP SER SER VAL ILE ASP SER ASP GLU LYS SEQRES 5 A 66 TRP LEU CYS ARG GLN CYS VAL PHE ALA THR THR THR LYS SEQRES 6 A 66 ARG HET ZN A 201 1 HET ZN A 401 1 HETNAM ZN ZINC ION FORMUL 2 ZN 2(ZN 2+) HELIX 1 1 SER A 44 ASP A 48 1 5 HELIX 2 2 ARG A 56 PHE A 60 1 5 SHEET 1 A 2 MET A 23 ILE A 25 0 SHEET 2 A 2 GLY A 32 HIS A 34 -1 O TYR A 33 N VAL A 24 LINK SG CYS A 9 ZN ZN A 201 1555 1555 2.38 LINK SG CYS A 12 ZN ZN A 201 1555 1555 2.22 LINK SG CYS A 26 ZN ZN A 401 1555 1555 2.27 LINK SG CYS A 29 ZN ZN A 401 1555 1555 2.24 LINK ND1 HIS A 34 ZN ZN A 201 1555 1555 2.10 LINK SG CYS A 37 ZN ZN A 201 1555 1555 2.30 LINK SG CYS A 55 ZN ZN A 401 1555 1555 2.22 LINK SG CYS A 58 ZN ZN A 401 1555 1555 2.35 CISPEP 1 ALA A 19 PRO A 20 1 -0.02 CISPEP 2 THR A 39 PRO A 40 1 0.03 CISPEP 3 ALA A 19 PRO A 20 2 -0.05 CISPEP 4 THR A 39 PRO A 40 2 -0.01 CISPEP 5 ALA A 19 PRO A 20 3 -0.02 CISPEP 6 THR A 39 PRO A 40 3 -0.07 CISPEP 7 ALA A 19 PRO A 20 4 0.04 CISPEP 8 THR A 39 PRO A 40 4 -0.09 CISPEP 9 ALA A 19 PRO A 20 5 0.04 CISPEP 10 THR A 39 PRO A 40 5 -0.10 CISPEP 11 ALA A 19 PRO A 20 6 0.01 CISPEP 12 THR A 39 PRO A 40 6 -0.13 CISPEP 13 ALA A 19 PRO A 20 7 0.03 CISPEP 14 THR A 39 PRO A 40 7 -0.03 CISPEP 15 ALA A 19 PRO A 20 8 0.02 CISPEP 16 THR A 39 PRO A 40 8 -0.10 CISPEP 17 ALA A 19 PRO A 20 9 0.08 CISPEP 18 THR A 39 PRO A 40 9 -0.05 CISPEP 19 ALA A 19 PRO A 20 10 0.03 CISPEP 20 THR A 39 PRO A 40 10 0.00 CISPEP 21 ALA A 19 PRO A 20 11 0.01 CISPEP 22 THR A 39 PRO A 40 11 -0.05 CISPEP 23 ALA A 19 PRO A 20 12 0.04 CISPEP 24 THR A 39 PRO A 40 12 -0.14 CISPEP 25 ALA A 19 PRO A 20 13 0.02 CISPEP 26 THR A 39 PRO A 40 13 0.01 CISPEP 27 ALA A 19 PRO A 20 14 -0.08 CISPEP 28 THR A 39 PRO A 40 14 -0.04 CISPEP 29 ALA A 19 PRO A 20 15 -0.06 CISPEP 30 THR A 39 PRO A 40 15 -0.06 CISPEP 31 ALA A 19 PRO A 20 16 0.00 CISPEP 32 THR A 39 PRO A 40 16 0.01 CISPEP 33 ALA A 19 PRO A 20 17 0.00 CISPEP 34 THR A 39 PRO A 40 17 -0.11 CISPEP 35 ALA A 19 PRO A 20 18 -0.03 CISPEP 36 THR A 39 PRO A 40 18 -0.06 CISPEP 37 ALA A 19 PRO A 20 19 -0.07 CISPEP 38 THR A 39 PRO A 40 19 -0.06 CISPEP 39 ALA A 19 PRO A 20 20 0.05 CISPEP 40 THR A 39 PRO A 40 20 -0.13 SITE 1 AC1 4 CYS A 9 ILE A 11 CYS A 12 ASN A 21 SITE 1 AC2 2 CYS A 26 LYS A 28 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1