data_2YT6 # _entry.id 2YT6 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.356 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2YT6 pdb_00002yt6 10.2210/pdb2yt6/pdb RCSB RCSB027102 ? ? WWPDB D_1000027102 ? ? # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id mmt008005407.1 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.entry_id 2YT6 _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.recvd_initial_deposition_date 2007-04-05 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr REL _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Dang, W.' 1 'Muto, Y.' 2 'Inoue, M.' 3 'Kigawa, T.' 4 'Shirouzu, M.' 5 'Tarada, T.' 6 'Yokoyama, S.' 7 'RIKEN Structural Genomics/Proteomics Initiative (RSGI)' 8 # _citation.id primary _citation.title 'Solution structure of the SH3_1 domain of Yamaguchi sarcoma viral (v-yes) oncogene homolog 1' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Dang, W.' 1 ? primary 'Muto, Y.' 2 ? primary 'Inoue, M.' 3 ? primary 'Kigawa, T.' 4 ? primary 'Shirouzu, M.' 5 ? primary 'Tarada, T.' 6 ? primary 'Yokoyama, S.' 7 ? # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description ;Adult male urinary bladder cDNA, RIKEN full-length enriched library, clone:9530076O17 product:Yamaguchi sarcoma viral (v-yes) oncogene homolog ; _entity.formula_weight 11635.558 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment 'SH3_1 domain' _entity.details ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GSSGSSGASSSFSVVSSSYPTGLTGGVTIFVALYDYEARTTEDLSFKKGERFQIINNTEGDWWEARSIATGKSGYIPSNY VVPADSIQAEEWYFGKMGRKDAESGPSSG ; _entity_poly.pdbx_seq_one_letter_code_can ;GSSGSSGASSSFSVVSSSYPTGLTGGVTIFVALYDYEARTTEDLSFKKGERFQIINNTEGDWWEARSIATGKSGYIPSNY VVPADSIQAEEWYFGKMGRKDAESGPSSG ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier mmt008005407.1 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 SER n 1 4 GLY n 1 5 SER n 1 6 SER n 1 7 GLY n 1 8 ALA n 1 9 SER n 1 10 SER n 1 11 SER n 1 12 PHE n 1 13 SER n 1 14 VAL n 1 15 VAL n 1 16 SER n 1 17 SER n 1 18 SER n 1 19 TYR n 1 20 PRO n 1 21 THR n 1 22 GLY n 1 23 LEU n 1 24 THR n 1 25 GLY n 1 26 GLY n 1 27 VAL n 1 28 THR n 1 29 ILE n 1 30 PHE n 1 31 VAL n 1 32 ALA n 1 33 LEU n 1 34 TYR n 1 35 ASP n 1 36 TYR n 1 37 GLU n 1 38 ALA n 1 39 ARG n 1 40 THR n 1 41 THR n 1 42 GLU n 1 43 ASP n 1 44 LEU n 1 45 SER n 1 46 PHE n 1 47 LYS n 1 48 LYS n 1 49 GLY n 1 50 GLU n 1 51 ARG n 1 52 PHE n 1 53 GLN n 1 54 ILE n 1 55 ILE n 1 56 ASN n 1 57 ASN n 1 58 THR n 1 59 GLU n 1 60 GLY n 1 61 ASP n 1 62 TRP n 1 63 TRP n 1 64 GLU n 1 65 ALA n 1 66 ARG n 1 67 SER n 1 68 ILE n 1 69 ALA n 1 70 THR n 1 71 GLY n 1 72 LYS n 1 73 SER n 1 74 GLY n 1 75 TYR n 1 76 ILE n 1 77 PRO n 1 78 SER n 1 79 ASN n 1 80 TYR n 1 81 VAL n 1 82 VAL n 1 83 PRO n 1 84 ALA n 1 85 ASP n 1 86 SER n 1 87 ILE n 1 88 GLN n 1 89 ALA n 1 90 GLU n 1 91 GLU n 1 92 TRP n 1 93 TYR n 1 94 PHE n 1 95 GLY n 1 96 LYS n 1 97 MET n 1 98 GLY n 1 99 ARG n 1 100 LYS n 1 101 ASP n 1 102 ALA n 1 103 GLU n 1 104 SER n 1 105 GLY n 1 106 PRO n 1 107 SER n 1 108 SER n 1 109 GLY n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name 'house mouse' _entity_src_gen.gene_src_genus Mus _entity_src_gen.pdbx_gene_src_gene Yes1 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Mus musculus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 10090 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name ? _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id ? _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name P050822-05 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description 'cell-free protein synthesis' # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q8CBP1_MOUSE _struct_ref.pdbx_db_accession Q8CBP1 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;ASSSFSVVSSSYPTGLTGGVTIFVALYDYEARTTEDLSFKKGERFQIINNTEGDWWEARSIATGKSGYIPSNYVVPADSI QAEEWYFGKMGRKDAE ; _struct_ref.pdbx_align_begin 72 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2YT6 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 8 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 103 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q8CBP1 _struct_ref_seq.db_align_beg 72 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 167 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 8 _struct_ref_seq.pdbx_auth_seq_align_end 103 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2YT6 GLY A 1 ? UNP Q8CBP1 ? ? 'expression tag' 1 1 1 2YT6 SER A 2 ? UNP Q8CBP1 ? ? 'expression tag' 2 2 1 2YT6 SER A 3 ? UNP Q8CBP1 ? ? 'expression tag' 3 3 1 2YT6 GLY A 4 ? UNP Q8CBP1 ? ? 'expression tag' 4 4 1 2YT6 SER A 5 ? UNP Q8CBP1 ? ? 'expression tag' 5 5 1 2YT6 SER A 6 ? UNP Q8CBP1 ? ? 'expression tag' 6 6 1 2YT6 GLY A 7 ? UNP Q8CBP1 ? ? 'expression tag' 7 7 1 2YT6 SER A 104 ? UNP Q8CBP1 ? ? 'expression tag' 104 8 1 2YT6 GLY A 105 ? UNP Q8CBP1 ? ? 'expression tag' 105 9 1 2YT6 PRO A 106 ? UNP Q8CBP1 ? ? 'expression tag' 106 10 1 2YT6 SER A 107 ? UNP Q8CBP1 ? ? 'expression tag' 107 11 1 2YT6 SER A 108 ? UNP Q8CBP1 ? ? 'expression tag' 108 12 1 2YT6 GLY A 109 ? UNP Q8CBP1 ? ? 'expression tag' 109 13 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.type 1 1 1 3D_13C-separated_NOESY 2 1 1 3D_15N-separated_NOESY # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 298 _pdbx_nmr_exptl_sample_conditions.pressure ambient _pdbx_nmr_exptl_sample_conditions.pH 7.0 _pdbx_nmr_exptl_sample_conditions.ionic_strength 120mM _pdbx_nmr_exptl_sample_conditions.pressure_units . _pdbx_nmr_exptl_sample_conditions.temperature_units K # _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.contents '1.0mM 13C, 15N-labeled protein; 20mM d-Tris-HCl (pH 7.0); 100mM NaCl; 1mM d-DTT; 0.02% NaN3; 90% H2O, 10% D2O' _pdbx_nmr_sample_details.solvent_system '90% H2O/10% D2O' # _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.manufacturer Bruker _pdbx_nmr_spectrometer.model AVANCE _pdbx_nmr_spectrometer.field_strength 800 _pdbx_nmr_spectrometer.type ? # _pdbx_nmr_refine.method 'torsion angle dynamics' _pdbx_nmr_refine.entry_id 2YT6 _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_ensemble.conformers_calculated_total_number 100 _pdbx_nmr_ensemble.conformers_submitted_total_number 20 _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the least restraint violations, structures with the lowest energy, target function' _pdbx_nmr_ensemble.entry_id 2YT6 _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'lowest energy' _pdbx_nmr_representative.entry_id 2YT6 # loop_ _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors _pdbx_nmr_software.ordinal collection XwinNMR 3.5 Bruker 1 processing NMRPipe 20030801 'Delaglio, F.' 2 'data analysis' NMRView 5.0.4 'Johnson, B.A.' 3 'data analysis' KUJIRA 0.9820 'Kobayashi, N.' 4 'structure solution' CYANA 2.0.17 'Guntert, P.' 5 refinement CYANA 2.0.17 'Guntert, P.' 6 # _exptl.method 'SOLUTION NMR' _exptl.entry_id 2YT6 _exptl.crystals_number ? # _struct.entry_id 2YT6 _struct.title 'Solution structure of the SH3_1 domain of Yamaguchi sarcoma viral (v-yes) oncogene homolog 1' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2YT6 _struct_keywords.text ;SH3_1 domain, Yamaguchi sarcoma viral (v-yes) oncogene homolog 1, Structural Genomics, NPPSFA, National Project on Protein Structural and Functional Analyses, RIKEN Structural Genomics/Proteomics Initiative, RSGI, CELL CYCLE ; _struct_keywords.pdbx_keywords 'CELL CYCLE' # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_biol.id 1 _struct_biol.details ? # _struct_conf.conf_type_id HELX_P _struct_conf.id HELX_P1 _struct_conf.pdbx_PDB_helix_id 1 _struct_conf.beg_label_comp_id GLU _struct_conf.beg_label_asym_id A _struct_conf.beg_label_seq_id 90 _struct_conf.pdbx_beg_PDB_ins_code ? _struct_conf.end_label_comp_id GLY _struct_conf.end_label_asym_id A _struct_conf.end_label_seq_id 95 _struct_conf.pdbx_end_PDB_ins_code ? _struct_conf.beg_auth_comp_id GLU _struct_conf.beg_auth_asym_id A _struct_conf.beg_auth_seq_id 90 _struct_conf.end_auth_comp_id GLY _struct_conf.end_auth_asym_id A _struct_conf.end_auth_seq_id 95 _struct_conf.pdbx_PDB_helix_class 1 _struct_conf.details ? _struct_conf.pdbx_PDB_helix_length 6 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 5 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 SER A 73 ? PRO A 77 ? SER A 73 PRO A 77 A 2 TRP A 62 ? SER A 67 ? TRP A 62 SER A 67 A 3 ARG A 51 ? ILE A 54 ? ARG A 51 ILE A 54 A 4 ILE A 29 ? ALA A 32 ? ILE A 29 ALA A 32 A 5 VAL A 81 ? PRO A 83 ? VAL A 81 PRO A 83 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O ILE A 76 ? O ILE A 76 N TRP A 63 ? N TRP A 63 A 2 3 O GLU A 64 ? O GLU A 64 N ILE A 55 ? N ILE A 55 A 3 4 O PHE A 52 ? O PHE A 52 N PHE A 30 ? N PHE A 30 A 4 5 N VAL A 31 ? N VAL A 31 O VAL A 82 ? O VAL A 82 # _atom_sites.entry_id 2YT6 _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 1 1 GLY GLY A . n A 1 2 SER 2 2 2 SER SER A . n A 1 3 SER 3 3 3 SER SER A . n A 1 4 GLY 4 4 4 GLY GLY A . n A 1 5 SER 5 5 5 SER SER A . n A 1 6 SER 6 6 6 SER SER A . n A 1 7 GLY 7 7 7 GLY GLY A . n A 1 8 ALA 8 8 8 ALA ALA A . n A 1 9 SER 9 9 9 SER SER A . n A 1 10 SER 10 10 10 SER SER A . n A 1 11 SER 11 11 11 SER SER A . n A 1 12 PHE 12 12 12 PHE PHE A . n A 1 13 SER 13 13 13 SER SER A . n A 1 14 VAL 14 14 14 VAL VAL A . n A 1 15 VAL 15 15 15 VAL VAL A . n A 1 16 SER 16 16 16 SER SER A . n A 1 17 SER 17 17 17 SER SER A . n A 1 18 SER 18 18 18 SER SER A . n A 1 19 TYR 19 19 19 TYR TYR A . n A 1 20 PRO 20 20 20 PRO PRO A . n A 1 21 THR 21 21 21 THR THR A . n A 1 22 GLY 22 22 22 GLY GLY A . n A 1 23 LEU 23 23 23 LEU LEU A . n A 1 24 THR 24 24 24 THR THR A . n A 1 25 GLY 25 25 25 GLY GLY A . n A 1 26 GLY 26 26 26 GLY GLY A . n A 1 27 VAL 27 27 27 VAL VAL A . n A 1 28 THR 28 28 28 THR THR A . n A 1 29 ILE 29 29 29 ILE ILE A . n A 1 30 PHE 30 30 30 PHE PHE A . n A 1 31 VAL 31 31 31 VAL VAL A . n A 1 32 ALA 32 32 32 ALA ALA A . n A 1 33 LEU 33 33 33 LEU LEU A . n A 1 34 TYR 34 34 34 TYR TYR A . n A 1 35 ASP 35 35 35 ASP ASP A . n A 1 36 TYR 36 36 36 TYR TYR A . n A 1 37 GLU 37 37 37 GLU GLU A . n A 1 38 ALA 38 38 38 ALA ALA A . n A 1 39 ARG 39 39 39 ARG ARG A . n A 1 40 THR 40 40 40 THR THR A . n A 1 41 THR 41 41 41 THR THR A . n A 1 42 GLU 42 42 42 GLU GLU A . n A 1 43 ASP 43 43 43 ASP ASP A . n A 1 44 LEU 44 44 44 LEU LEU A . n A 1 45 SER 45 45 45 SER SER A . n A 1 46 PHE 46 46 46 PHE PHE A . n A 1 47 LYS 47 47 47 LYS LYS A . n A 1 48 LYS 48 48 48 LYS LYS A . n A 1 49 GLY 49 49 49 GLY GLY A . n A 1 50 GLU 50 50 50 GLU GLU A . n A 1 51 ARG 51 51 51 ARG ARG A . n A 1 52 PHE 52 52 52 PHE PHE A . n A 1 53 GLN 53 53 53 GLN GLN A . n A 1 54 ILE 54 54 54 ILE ILE A . n A 1 55 ILE 55 55 55 ILE ILE A . n A 1 56 ASN 56 56 56 ASN ASN A . n A 1 57 ASN 57 57 57 ASN ASN A . n A 1 58 THR 58 58 58 THR THR A . n A 1 59 GLU 59 59 59 GLU GLU A . n A 1 60 GLY 60 60 60 GLY GLY A . n A 1 61 ASP 61 61 61 ASP ASP A . n A 1 62 TRP 62 62 62 TRP TRP A . n A 1 63 TRP 63 63 63 TRP TRP A . n A 1 64 GLU 64 64 64 GLU GLU A . n A 1 65 ALA 65 65 65 ALA ALA A . n A 1 66 ARG 66 66 66 ARG ARG A . n A 1 67 SER 67 67 67 SER SER A . n A 1 68 ILE 68 68 68 ILE ILE A . n A 1 69 ALA 69 69 69 ALA ALA A . n A 1 70 THR 70 70 70 THR THR A . n A 1 71 GLY 71 71 71 GLY GLY A . n A 1 72 LYS 72 72 72 LYS LYS A . n A 1 73 SER 73 73 73 SER SER A . n A 1 74 GLY 74 74 74 GLY GLY A . n A 1 75 TYR 75 75 75 TYR TYR A . n A 1 76 ILE 76 76 76 ILE ILE A . n A 1 77 PRO 77 77 77 PRO PRO A . n A 1 78 SER 78 78 78 SER SER A . n A 1 79 ASN 79 79 79 ASN ASN A . n A 1 80 TYR 80 80 80 TYR TYR A . n A 1 81 VAL 81 81 81 VAL VAL A . n A 1 82 VAL 82 82 82 VAL VAL A . n A 1 83 PRO 83 83 83 PRO PRO A . n A 1 84 ALA 84 84 84 ALA ALA A . n A 1 85 ASP 85 85 85 ASP ASP A . n A 1 86 SER 86 86 86 SER SER A . n A 1 87 ILE 87 87 87 ILE ILE A . n A 1 88 GLN 88 88 88 GLN GLN A . n A 1 89 ALA 89 89 89 ALA ALA A . n A 1 90 GLU 90 90 90 GLU GLU A . n A 1 91 GLU 91 91 91 GLU GLU A . n A 1 92 TRP 92 92 92 TRP TRP A . n A 1 93 TYR 93 93 93 TYR TYR A . n A 1 94 PHE 94 94 94 PHE PHE A . n A 1 95 GLY 95 95 95 GLY GLY A . n A 1 96 LYS 96 96 96 LYS LYS A . n A 1 97 MET 97 97 97 MET MET A . n A 1 98 GLY 98 98 98 GLY GLY A . n A 1 99 ARG 99 99 99 ARG ARG A . n A 1 100 LYS 100 100 100 LYS LYS A . n A 1 101 ASP 101 101 101 ASP ASP A . n A 1 102 ALA 102 102 102 ALA ALA A . n A 1 103 GLU 103 103 103 GLU GLU A . n A 1 104 SER 104 104 104 SER SER A . n A 1 105 GLY 105 105 105 GLY GLY A . n A 1 106 PRO 106 106 106 PRO PRO A . n A 1 107 SER 107 107 107 SER SER A . n A 1 108 SER 108 108 108 SER SER A . n A 1 109 GLY 109 109 109 GLY GLY A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'NPPSFA, National Project on Protein Structural and Functional Analyses' _pdbx_SG_project.full_name_of_center 'RIKEN Structural Genomics/Proteomics Initiative' _pdbx_SG_project.initial_of_center RSGI # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2008-04-08 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2022-03-16 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' database_2 2 3 'Structure model' pdbx_nmr_software 3 3 'Structure model' pdbx_nmr_spectrometer 4 3 'Structure model' pdbx_struct_assembly 5 3 'Structure model' pdbx_struct_oper_list 6 3 'Structure model' struct_ref_seq_dif # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_pdbx_nmr_software.name' 4 3 'Structure model' '_pdbx_nmr_spectrometer.model' 5 3 'Structure model' '_struct_ref_seq_dif.details' # loop_ _pdbx_database_remark.id _pdbx_database_remark.text 650 ;HELIX DETERMINATION METHOD: AUTHOR DETERMINED ; 700 ;SHEET DETERMINATION METHOD: AUTHOR DETERMINED ; # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 SER A 9 ? ? -60.69 87.83 2 1 SER A 10 ? ? -170.52 144.81 3 1 ILE A 87 ? ? -35.51 103.57 4 1 GLU A 90 ? ? -35.43 -30.29 5 1 GLU A 91 ? ? -38.34 -32.62 6 1 SER A 108 ? ? -47.51 109.07 7 2 SER A 9 ? ? -89.68 42.83 8 2 SER A 10 ? ? -163.86 118.05 9 2 PRO A 20 ? ? -69.82 94.66 10 2 THR A 21 ? ? -37.16 150.88 11 2 ALA A 38 ? ? -51.77 106.79 12 2 ILE A 87 ? ? -36.60 103.65 13 2 GLU A 90 ? ? -35.29 -30.59 14 2 GLU A 91 ? ? -37.57 -32.06 15 2 LYS A 96 ? ? -92.16 49.08 16 2 LYS A 100 ? ? 31.27 38.79 17 2 ASP A 101 ? ? -64.98 88.08 18 2 ALA A 102 ? ? -68.26 83.61 19 2 SER A 104 ? ? 35.78 49.14 20 3 SER A 6 ? ? -170.10 133.50 21 3 ALA A 8 ? ? -170.24 149.82 22 3 SER A 10 ? ? -81.65 41.51 23 3 SER A 11 ? ? 34.73 40.74 24 3 ILE A 87 ? ? -35.90 103.40 25 3 GLU A 90 ? ? -34.98 -31.45 26 3 GLU A 91 ? ? -37.07 -32.72 27 3 GLU A 103 ? ? -174.28 108.38 28 4 SER A 9 ? ? -107.37 41.82 29 4 PRO A 20 ? ? -69.76 -176.73 30 4 ILE A 87 ? ? -33.13 103.61 31 4 GLU A 90 ? ? -35.28 -30.61 32 4 GLU A 91 ? ? -37.54 -33.08 33 4 ALA A 102 ? ? -40.97 103.37 34 4 PRO A 106 ? ? -69.81 99.22 35 4 SER A 108 ? ? -95.88 55.79 36 5 SER A 13 ? ? -61.36 83.68 37 5 THR A 21 ? ? -99.00 39.07 38 5 LEU A 23 ? ? -87.38 40.24 39 5 ALA A 38 ? ? -51.81 106.05 40 5 SER A 67 ? ? -39.15 142.08 41 5 ILE A 87 ? ? -35.36 103.28 42 5 GLU A 90 ? ? -34.97 -31.20 43 5 GLU A 91 ? ? -37.39 -31.92 44 6 ALA A 8 ? ? -59.09 104.83 45 6 SER A 11 ? ? -127.28 -54.84 46 6 VAL A 15 ? ? 36.40 38.50 47 6 PRO A 20 ? ? -69.77 86.84 48 6 THR A 21 ? ? -34.05 146.48 49 6 ILE A 87 ? ? -35.82 103.46 50 6 GLU A 90 ? ? -35.07 -30.70 51 6 GLU A 91 ? ? -37.78 -32.22 52 6 ARG A 99 ? ? -167.62 119.23 53 7 SER A 17 ? ? -125.09 -65.26 54 7 THR A 24 ? ? -44.30 -70.09 55 7 ILE A 87 ? ? -33.50 103.41 56 7 GLU A 90 ? ? -34.77 -31.22 57 7 GLU A 91 ? ? -37.20 -33.76 58 8 ALA A 8 ? ? -171.42 120.72 59 8 PHE A 12 ? ? 74.62 43.93 60 8 SER A 13 ? ? -38.22 146.01 61 8 VAL A 15 ? ? -36.48 116.45 62 8 THR A 24 ? ? -62.28 88.41 63 8 ILE A 87 ? ? -33.70 103.50 64 8 GLU A 90 ? ? -35.24 -30.78 65 8 GLU A 91 ? ? -37.78 -33.01 66 8 LYS A 96 ? ? -49.02 -72.39 67 8 ARG A 99 ? ? -167.18 115.86 68 8 GLU A 103 ? ? -46.97 102.64 69 9 ALA A 38 ? ? -52.27 106.47 70 9 ILE A 87 ? ? -40.79 103.65 71 9 GLU A 90 ? ? -35.26 -30.79 72 9 GLU A 91 ? ? -37.67 -32.71 73 9 MET A 97 ? ? -36.41 147.16 74 9 LYS A 100 ? ? -171.81 129.09 75 10 SER A 2 ? ? 38.68 42.24 76 10 ALA A 8 ? ? -174.92 118.76 77 10 VAL A 15 ? ? -172.12 131.75 78 10 LYS A 48 ? ? -58.46 106.72 79 10 ILE A 87 ? ? -35.59 103.49 80 10 GLU A 90 ? ? -34.97 -31.14 81 10 GLU A 91 ? ? -37.16 -33.69 82 10 LYS A 96 ? ? -33.22 134.30 83 10 SER A 104 ? ? -173.21 125.04 84 10 SER A 108 ? ? -170.15 134.60 85 11 SER A 6 ? ? -172.46 126.14 86 11 SER A 18 ? ? -44.68 161.27 87 11 ILE A 87 ? ? -38.90 104.50 88 11 GLU A 90 ? ? -36.29 -28.04 89 11 LYS A 96 ? ? -34.43 149.18 90 11 MET A 97 ? ? -39.15 105.43 91 12 PRO A 20 ? ? -69.80 -179.17 92 12 ILE A 87 ? ? -38.56 103.39 93 12 GLU A 90 ? ? -35.92 -28.70 94 12 ARG A 99 ? ? -124.30 -59.89 95 12 SER A 108 ? ? -84.32 41.93 96 13 ALA A 8 ? ? -174.31 107.30 97 13 SER A 13 ? ? -174.88 123.47 98 13 VAL A 15 ? ? -128.69 -69.19 99 13 SER A 16 ? ? -102.33 -70.79 100 13 PRO A 20 ? ? -69.69 -165.16 101 13 LEU A 23 ? ? -32.92 148.64 102 13 ALA A 38 ? ? -53.56 108.36 103 13 ILE A 87 ? ? -34.22 103.51 104 13 GLU A 90 ? ? -34.97 -31.16 105 13 GLU A 91 ? ? -37.41 -34.55 106 13 ALA A 102 ? ? -166.95 110.71 107 14 SER A 5 ? ? -163.75 116.26 108 14 ALA A 38 ? ? -51.81 106.97 109 14 ILE A 87 ? ? -41.17 103.52 110 14 GLU A 90 ? ? -35.20 -30.37 111 14 GLU A 91 ? ? -38.55 -35.19 112 14 ASP A 101 ? ? -171.78 114.61 113 14 PRO A 106 ? ? -69.76 98.83 114 15 SER A 10 ? ? -101.57 42.88 115 15 SER A 18 ? ? -39.40 136.28 116 15 ILE A 87 ? ? -33.70 103.61 117 15 GLU A 90 ? ? -35.49 -29.63 118 15 GLU A 91 ? ? -39.22 -32.26 119 15 ARG A 99 ? ? -39.80 136.71 120 15 GLU A 103 ? ? -121.10 -60.31 121 16 SER A 10 ? ? -172.69 117.06 122 16 THR A 21 ? ? -76.34 47.75 123 16 ASN A 79 ? ? -49.41 -17.80 124 16 ILE A 87 ? ? -35.93 103.63 125 16 GLU A 90 ? ? -35.65 -28.93 126 16 GLU A 91 ? ? -38.87 -31.42 127 16 MET A 97 ? ? -46.94 154.06 128 16 ARG A 99 ? ? -51.05 102.06 129 16 PRO A 106 ? ? -69.73 93.87 130 17 SER A 5 ? ? -37.31 150.18 131 17 SER A 13 ? ? -172.67 125.12 132 17 SER A 17 ? ? -56.59 178.58 133 17 ALA A 38 ? ? -52.57 106.09 134 17 ILE A 87 ? ? -33.20 103.39 135 17 GLU A 90 ? ? -35.24 -30.59 136 17 GLU A 91 ? ? -37.60 -32.24 137 17 GLU A 103 ? ? -63.55 94.94 138 17 SER A 108 ? ? -170.84 144.36 139 18 SER A 2 ? ? 35.05 51.49 140 18 TYR A 19 ? ? -38.09 140.32 141 18 ILE A 87 ? ? -33.62 103.49 142 18 GLU A 90 ? ? -35.81 -28.91 143 18 GLU A 91 ? ? -39.15 -30.83 144 18 ARG A 99 ? ? -174.15 140.67 145 18 ALA A 102 ? ? -37.74 112.51 146 19 PHE A 12 ? ? -35.42 134.72 147 19 ILE A 87 ? ? -35.24 103.26 148 19 GLU A 90 ? ? -34.82 -31.27 149 19 GLU A 91 ? ? -37.15 -33.31 150 20 SER A 18 ? ? -165.95 118.18 151 20 PRO A 20 ? ? -69.70 -172.49 152 20 ALA A 38 ? ? -51.62 106.38 153 20 ILE A 68 ? ? -93.43 -62.10 154 20 ILE A 87 ? ? -40.36 103.78 155 20 GLU A 90 ? ? -35.83 -28.70 156 20 GLU A 91 ? ? -38.96 -31.35 157 20 PRO A 106 ? ? -69.76 -178.02 158 20 SER A 107 ? ? -160.38 112.21 #