HEADER PROTEIN TRANSPORT 05-APR-07 2YT8 TITLE SOLUTION STRUCTURE OF THE PDZ DOMAIN OF AMYLOID BETA A4 PRECURSOR TITLE 2 PROTEIN-BINDING FAMILY A MEMBER 3 (NEURON- SPECIFIC X11L2 PROTEIN) TITLE 3 (NEURONAL MUNC18-1-INTERACTING PROTEIN 3) (MINT-3) (ADAPTER PROTEIN TITLE 4 X11GAMMA) COMPND MOL_ID: 1; COMPND 2 MOLECULE: AMYLOID BETA A4 PRECURSOR PROTEIN-BINDING FAMILY A MEMBER COMPND 3 3; COMPND 4 CHAIN: A; COMPND 5 FRAGMENT: UNP RESIDUES 483-569, PDZ DOMAIN; COMPND 6 SYNONYM: NEURON-SPECIFIC X11L2 PROTEIN, NEURONAL MUNC18-1-INTERACTING COMPND 7 PROTEIN 3, MINT-3, ADAPTER PROTEIN X11GAMMA; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: APBA3; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P061128-10; SOURCE 8 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS KEYWDS STRUCTURE GENOMICS, PDZ DOMAIN, STRUCTURAL GENOMICS, NPPSFA, NATIONAL KEYWDS 2 PROJECT ON PROTEIN STRUCTURAL AND FUNCTIONAL ANALYSES, RIKEN KEYWDS 3 STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE, RSGI, PROTEIN TRANSPORT EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR W.DANG,Y.MUTO,M.INOUE,T.KIGAWA,M.SHIROUZU,T.TARADA,M.SEIKI, AUTHOR 2 S.YOKOYAMA,RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE (RSGI) REVDAT 3 16-MAR-22 2YT8 1 REMARK SEQADV REVDAT 2 24-FEB-09 2YT8 1 VERSN REVDAT 1 08-APR-08 2YT8 0 JRNL AUTH W.DANG,Y.MUTO,M.INOUE,T.KIGAWA,M.SHIROUZU,T.TARADA,M.SEIKI, JRNL AUTH 2 S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF THE PDZ DOMAIN OF AMYLOID BETA A4 JRNL TITL 2 PRECURSOR PROTEIN-BINDING FAMILY A MEMBER 3 (NEURON- JRNL TITL 3 SPECIFIC X11L2 PROTEIN) (NEURONAL MUNC18-1-INTERACTING JRNL TITL 4 PROTEIN 3) (MINT-3) (ADAPTER PROTEIN X11GAMMA) JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XWINNMR 3.5, CYANA 2.0.17 REMARK 3 AUTHORS : BRUKER (XWINNMR), GUNTERT, P. (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2YT8 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 26-JUN-07. REMARK 100 THE DEPOSITION ID IS D_1000027104. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.0MM 13C, 15N-LABELED PROTEIN; REMARK 210 20MM D-TRIS-HCL(PH7.0); 100MM REMARK 210 NACL; 1MM D-DTT; 0.02% NAN3; 90% REMARK 210 H2O, 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY; 3D_15N REMARK 210 -SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 20030801, NMRVIEW 5.0.4, REMARK 210 KUJIRA 0.9820, CYANA 2.0.17 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS,STRUCTURES REMARK 210 WITH THE LOWEST ENERGY,TARGET REMARK 210 FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 GLN A 21 -179.13 -61.06 REMARK 500 2 GLN A 21 171.15 -45.54 REMARK 500 2 ASN A 55 37.79 36.96 REMARK 500 2 ALA A 85 -34.64 -36.40 REMARK 500 3 SER A 6 118.79 -173.44 REMARK 500 3 GLN A 21 177.51 -48.89 REMARK 500 3 LEU A 22 -60.58 -104.76 REMARK 500 3 ASN A 55 28.45 49.49 REMARK 500 3 ALA A 85 -33.81 -38.70 REMARK 500 4 GLN A 21 173.04 -56.75 REMARK 500 4 ASN A 55 29.41 37.37 REMARK 500 5 GLN A 21 -177.24 -52.99 REMARK 500 5 ASN A 55 34.62 38.25 REMARK 500 5 THR A 62 139.06 -37.80 REMARK 500 6 GLN A 21 169.44 -45.39 REMARK 500 6 ASN A 55 38.09 36.75 REMARK 500 7 ARG A 19 -32.80 -34.40 REMARK 500 7 GLN A 21 -174.83 -67.02 REMARK 500 7 ASP A 28 36.75 74.14 REMARK 500 7 LEU A 70 -70.38 -66.44 REMARK 500 8 GLN A 21 171.32 -50.00 REMARK 500 8 LEU A 35 94.76 -67.55 REMARK 500 9 SER A 3 125.40 -172.36 REMARK 500 9 ARG A 19 -32.44 -34.75 REMARK 500 9 VAL A 47 170.35 -59.58 REMARK 500 9 ASN A 55 33.60 37.15 REMARK 500 9 ALA A 85 -38.70 -39.85 REMARK 500 10 SER A 6 99.23 -56.39 REMARK 500 10 GLN A 21 176.07 -47.77 REMARK 500 10 THR A 62 137.42 -34.21 REMARK 500 11 ASN A 55 31.29 35.66 REMARK 500 11 ALA A 85 -35.13 -36.44 REMARK 500 12 SER A 2 98.10 -57.12 REMARK 500 12 GLN A 21 168.45 -44.32 REMARK 500 12 ASN A 55 43.57 34.55 REMARK 500 13 ARG A 15 79.83 -109.73 REMARK 500 13 ARG A 19 -32.36 -34.76 REMARK 500 13 CYS A 32 -62.05 -121.06 REMARK 500 13 VAL A 47 170.69 -47.77 REMARK 500 13 ILE A 67 -33.19 -37.62 REMARK 500 13 THR A 87 -71.72 -50.73 REMARK 500 14 ARG A 19 -38.34 -34.35 REMARK 500 14 GLN A 21 -174.95 -62.30 REMARK 500 14 ASN A 55 29.90 46.53 REMARK 500 15 GLN A 21 170.57 -50.81 REMARK 500 15 ALA A 85 -39.59 -38.18 REMARK 500 16 SER A 3 43.72 39.46 REMARK 500 16 SER A 5 148.07 -172.86 REMARK 500 16 SER A 6 37.58 36.00 REMARK 500 16 GLU A 41 -39.44 -36.79 REMARK 500 REMARK 500 THIS ENTRY HAS 67 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 650 REMARK 650 HELIX REMARK 650 DETERMINATION METHOD: AUTHOR DETERMINED REMARK 700 REMARK 700 SHEET REMARK 700 DETERMINATION METHOD: AUTHOR DETERMINED REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: AR_001000806.2 RELATED DB: TARGETDB DBREF 2YT8 A 8 94 UNP O96018 APBA3_HUMAN 483 569 SEQADV 2YT8 GLY A 1 UNP O96018 EXPRESSION TAG SEQADV 2YT8 SER A 2 UNP O96018 EXPRESSION TAG SEQADV 2YT8 SER A 3 UNP O96018 EXPRESSION TAG SEQADV 2YT8 GLY A 4 UNP O96018 EXPRESSION TAG SEQADV 2YT8 SER A 5 UNP O96018 EXPRESSION TAG SEQADV 2YT8 SER A 6 UNP O96018 EXPRESSION TAG SEQADV 2YT8 GLY A 7 UNP O96018 EXPRESSION TAG SEQRES 1 A 94 GLY SER SER GLY SER SER GLY VAL THR THR ALA ILE ILE SEQRES 2 A 94 HIS ARG PRO HIS ALA ARG GLU GLN LEU GLY PHE CYS VAL SEQRES 3 A 94 GLU ASP GLY ILE ILE CYS SER LEU LEU ARG GLY GLY ILE SEQRES 4 A 94 ALA GLU ARG GLY GLY ILE ARG VAL GLY HIS ARG ILE ILE SEQRES 5 A 94 GLU ILE ASN GLY GLN SER VAL VAL ALA THR PRO HIS ALA SEQRES 6 A 94 ARG ILE ILE GLU LEU LEU THR GLU ALA TYR GLY GLU VAL SEQRES 7 A 94 HIS ILE LYS THR MET PRO ALA ALA THR TYR ARG LEU LEU SEQRES 8 A 94 THR GLY GLN HELIX 1 1 ALA A 40 GLY A 43 1 4 HELIX 2 2 HIS A 64 GLU A 73 1 10 HELIX 3 3 ALA A 85 LEU A 91 1 7 SHEET 1 A 4 THR A 9 ARG A 15 0 SHEET 2 A 4 GLY A 76 PRO A 84 -1 O GLY A 76 N ARG A 15 SHEET 3 A 4 ARG A 50 ILE A 54 -1 N ARG A 50 O MET A 83 SHEET 4 A 4 GLN A 57 SER A 58 -1 O GLN A 57 N ILE A 54 SHEET 1 B 2 PHE A 24 GLU A 27 0 SHEET 2 B 2 ILE A 30 LEU A 34 -1 O SER A 33 N CYS A 25 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1