HEADER METAL BINDING PROTEIN 05-APR-07 2YTB TITLE SOLUTION STRUCTURE OF C2H2 TYPE ZINC FINGER DOMAIN 5 IN ZINC FINGER TITLE 2 PROTEIN 32 COMPND MOL_ID: 1; COMPND 2 MOLECULE: ZINC FINGER PROTEIN 32; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: ZINC-FINGER MOTIF; COMPND 5 SYNONYM: ZINC FINGER PROTEIN KOX30, C2H2-546; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ZNF32, KOX30; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P061204-06; SOURCE 8 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS KEYWDS ZINC-FINGER DOMAIN, C2H2, STRUCTURAL GENOMICS, NPPSFA, NATIONAL KEYWDS 2 PROJECT ON PROTEIN STRUCTURAL AND FUNCTIONAL ANALYSES, RIKEN KEYWDS 3 STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE, RSGI, METAL BINDING KEYWDS 4 PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR N.KASAHARA,K.TSUDA,Y.MUTO,M.INOUE,T.KIGAWA,T.TERADA,M.SHIROUZU, AUTHOR 2 S.YOKOYAMA,RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE (RSGI) REVDAT 3 16-MAR-22 2YTB 1 REMARK SEQADV REVDAT 2 24-FEB-09 2YTB 1 VERSN REVDAT 1 09-OCT-07 2YTB 0 JRNL AUTH N.KASAHARA,K.TSUDA,Y.MUTO,M.INOUE,T.KIGAWA,T.TERADA, JRNL AUTH 2 M.SHIROUZU,S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF C2H2 TYPE ZINC FINGER DOMAIN 5 IN ZINC JRNL TITL 2 FINGER PROTEIN 32 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XWINNMR 3.5, CYANA 2.0.17 REMARK 3 AUTHORS : BRUKER (XWINNMR), GUTERT,P (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2YTB COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 26-JUN-07. REMARK 100 THE DEPOSITION ID IS D_1000027107. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 20MM D-TRIS-HCL(PH7.0), 100MM REMARK 210 NACL, 1MM D-DTT, 0.02% NAN3, REMARK 210 0.05MM ZNCL2 +1MM IDA, 90% H2O, REMARK 210 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY; 3D_15N REMARK 210 -SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 20060702, NMRVIEW 5.0.4, REMARK 210 KUJIRA 0.9820, CYANA 2.0.17 REMARK 210 METHOD USED : TORSION ANGLE REMARK 210 DYNAMICS,RESTRAINTED MOLECULAR REMARK 210 DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS, STRUCTURES REMARK 210 WITH THE LOWEST ENERGY, TARGET REMARK 210 FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 187 178.26 -57.35 REMARK 500 1 SER A 189 64.72 -157.37 REMARK 500 1 HIS A 218 -74.07 -95.96 REMARK 500 1 SER A 224 34.70 -157.59 REMARK 500 1 SER A 225 -172.02 53.81 REMARK 500 2 HIS A 218 -74.75 -97.66 REMARK 500 2 PRO A 223 96.76 -69.78 REMARK 500 2 SER A 225 -42.95 -152.72 REMARK 500 3 SER A 186 80.53 56.11 REMARK 500 3 HIS A 218 -74.87 -98.50 REMARK 500 3 SER A 224 -51.65 -156.56 REMARK 500 4 HIS A 218 -74.19 -97.53 REMARK 500 4 PRO A 223 93.83 -69.77 REMARK 500 5 HIS A 218 -74.87 -98.48 REMARK 500 5 SER A 224 94.43 -169.27 REMARK 500 5 SER A 225 -47.01 -158.82 REMARK 500 6 SER A 189 -67.55 -97.19 REMARK 500 6 SER A 190 72.93 57.56 REMARK 500 6 HIS A 218 -75.00 -98.34 REMARK 500 6 PRO A 223 97.49 -69.71 REMARK 500 7 SER A 189 86.90 56.99 REMARK 500 7 HIS A 218 -74.82 -96.51 REMARK 500 7 PRO A 223 -173.40 -69.76 REMARK 500 8 SER A 186 -170.14 61.41 REMARK 500 8 SER A 187 -59.00 -169.77 REMARK 500 8 HIS A 218 -74.71 -93.86 REMARK 500 8 PRO A 223 88.38 -69.74 REMARK 500 8 SER A 225 -173.34 57.90 REMARK 500 9 SER A 189 77.55 54.25 REMARK 500 9 HIS A 218 -74.95 -98.69 REMARK 500 10 HIS A 218 -75.07 -98.95 REMARK 500 11 SER A 190 -58.59 -133.35 REMARK 500 11 GLU A 193 -71.45 -55.82 REMARK 500 11 HIS A 218 -74.83 -91.14 REMARK 500 11 SER A 225 94.87 58.45 REMARK 500 12 HIS A 218 -74.92 -98.59 REMARK 500 12 SER A 224 166.79 61.89 REMARK 500 12 SER A 225 167.03 61.78 REMARK 500 13 SER A 186 55.55 -96.62 REMARK 500 13 SER A 190 -177.61 -176.46 REMARK 500 13 HIS A 218 -74.71 -98.43 REMARK 500 13 SER A 221 68.45 -117.02 REMARK 500 13 PRO A 223 84.17 -69.78 REMARK 500 14 GLU A 193 -36.56 -175.13 REMARK 500 14 HIS A 218 -74.09 -97.56 REMARK 500 14 SER A 224 -177.63 63.03 REMARK 500 14 SER A 225 57.96 -104.93 REMARK 500 15 SER A 186 93.46 -171.08 REMARK 500 15 HIS A 218 -75.05 -92.33 REMARK 500 16 SER A 190 92.59 63.16 REMARK 500 REMARK 500 THIS ENTRY HAS 62 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 301 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 198 SG REMARK 620 2 CYS A 201 SG 112.8 REMARK 620 3 HIS A 214 NE2 101.9 100.2 REMARK 620 4 HIS A 218 NE2 118.8 117.1 101.7 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 301 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HSI002014866.6 RELATED DB: TARGETDB DBREF 2YTB A 192 220 UNP P17041 ZNF32_HUMAN 185 213 SEQADV 2YTB GLY A 185 UNP P17041 EXPRESSION TAG SEQADV 2YTB SER A 186 UNP P17041 EXPRESSION TAG SEQADV 2YTB SER A 187 UNP P17041 EXPRESSION TAG SEQADV 2YTB GLY A 188 UNP P17041 EXPRESSION TAG SEQADV 2YTB SER A 189 UNP P17041 EXPRESSION TAG SEQADV 2YTB SER A 190 UNP P17041 EXPRESSION TAG SEQADV 2YTB GLY A 191 UNP P17041 EXPRESSION TAG SEQADV 2YTB SER A 221 UNP P17041 EXPRESSION TAG SEQADV 2YTB GLY A 222 UNP P17041 EXPRESSION TAG SEQADV 2YTB PRO A 223 UNP P17041 EXPRESSION TAG SEQADV 2YTB SER A 224 UNP P17041 EXPRESSION TAG SEQADV 2YTB SER A 225 UNP P17041 EXPRESSION TAG SEQADV 2YTB GLY A 226 UNP P17041 EXPRESSION TAG SEQRES 1 A 42 GLY SER SER GLY SER SER GLY GLY GLU LYS PRO TYR ARG SEQRES 2 A 42 CYS ASP GLN CYS GLY LYS ALA PHE SER GLN LYS GLY SER SEQRES 3 A 42 LEU ILE VAL HIS ILE ARG VAL HIS THR GLY SER GLY PRO SEQRES 4 A 42 SER SER GLY HET ZN A 301 1 HETNAM ZN ZINC ION FORMUL 2 ZN ZN 2+ HELIX 1 1 GLN A 207 VAL A 213 1 7 HELIX 2 2 HIS A 214 HIS A 218 5 5 LINK SG CYS A 198 ZN ZN A 301 1555 1555 2.35 LINK SG CYS A 201 ZN ZN A 301 1555 1555 2.40 LINK NE2 HIS A 214 ZN ZN A 301 1555 1555 1.90 LINK NE2 HIS A 218 ZN ZN A 301 1555 1555 1.96 SITE 1 AC1 4 CYS A 198 CYS A 201 HIS A 214 HIS A 218 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1