HEADER TRANSCRIPTION 05-APR-07 2YTP TITLE SOLUTION STRUCTURE OF THE C2H2 TYPE ZINC FINGER (REGION 687-719) OF TITLE 2 HUMAN ZINC FINGER PROTEIN 484 COMPND MOL_ID: 1; COMPND 2 MOLECULE: ZINC FINGER PROTEIN 484; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: ZF-C2H2; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ZNF484; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P070115-49; SOURCE 8 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS KEYWDS ZF-C2H2, STRUCTURAL GENOMICS, NPPSFA, NATIONAL PROJECT ON PROTEIN KEYWDS 2 STRUCTURAL AND FUNCTIONAL ANALYSES, RIKEN STRUCTURAL KEYWDS 3 GENOMICS/PROTEOMICS INITIATIVE, RSGI, TRANSCRIPTION EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR N.TOCHIO,T.TOMIZAWA,H.ABE,K.SAITO,H.LI,M.SATO,S.KOSHIBA,N.KOBAYASHI, AUTHOR 2 T.KIGAWA,S.YOKOYAMA,RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE AUTHOR 3 (RSGI) REVDAT 4 29-MAY-24 2YTP 1 REMARK REVDAT 3 16-MAR-22 2YTP 1 REMARK SEQADV REVDAT 2 24-FEB-09 2YTP 1 VERSN REVDAT 1 09-OCT-07 2YTP 0 JRNL AUTH N.TOCHIO,T.TOMIZAWA,H.ABE,K.SAITO,H.LI,M.SATO,S.KOSHIBA, JRNL AUTH 2 N.KOBAYASHI,T.KIGAWA,S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF THE C2H2 TYPE ZINC FINGER (REGION JRNL TITL 2 687-719) OF HUMAN ZINC FINGER PROTEIN 484 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XWINNMR 3.5, CYANA 2.0.17 REMARK 3 AUTHORS : BRUKER (XWINNMR), GUNTERT, P. (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2YTP COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 26-JUN-06. REMARK 100 THE DEPOSITION ID IS D_1000027121. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : ABOUT 1.0MM SAMPLE U-15N, 13C; REMARK 210 20MM D-TRIS-HCL; 100MM NACL; REMARK 210 0.05MM ZNCL2; 1MM IDA; 1MM D-DTT; REMARK 210 0.02% NAN3; 90% H2O, 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY; 3D_15N REMARK 210 -SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 700 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 20030801, NMRVIEW 5.0.4, REMARK 210 KUJIRA 0.9820, CYANA 2.0.17 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS, TARGET REMARK 210 FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 2 47.41 -84.60 REMARK 500 1 GLU A 10 109.88 -56.21 REMARK 500 1 GLU A 38 41.34 38.05 REMARK 500 1 PRO A 43 92.89 -69.80 REMARK 500 2 GLU A 10 42.79 -81.06 REMARK 500 2 ARG A 11 82.87 -62.50 REMARK 500 2 GLN A 32 -29.86 -39.53 REMARK 500 2 PRO A 40 90.88 -69.78 REMARK 500 3 SER A 3 143.24 -172.66 REMARK 500 3 ARG A 11 77.38 -112.78 REMARK 500 3 SER A 45 167.27 -45.22 REMARK 500 4 SER A 5 -58.53 -126.79 REMARK 500 4 GLN A 32 -26.07 -38.85 REMARK 500 4 SER A 44 85.03 -53.81 REMARK 500 4 SER A 45 -61.88 -92.79 REMARK 500 5 ARG A 11 79.24 -105.05 REMARK 500 5 HIS A 35 -75.03 -68.87 REMARK 500 5 LYS A 39 155.02 -45.82 REMARK 500 6 ARG A 11 42.47 -82.45 REMARK 500 6 HIS A 35 -71.03 -75.58 REMARK 500 7 ARG A 11 87.15 -55.10 REMARK 500 8 SER A 2 42.50 34.38 REMARK 500 8 SER A 3 99.30 -63.76 REMARK 500 8 GLN A 32 -32.67 -38.48 REMARK 500 9 GLU A 10 130.87 -35.71 REMARK 500 9 ARG A 11 60.37 -103.90 REMARK 500 10 ARG A 11 78.93 -64.71 REMARK 500 10 GLN A 32 -26.50 -38.77 REMARK 500 10 HIS A 35 34.77 -84.55 REMARK 500 10 THR A 36 136.20 -174.71 REMARK 500 10 PRO A 43 96.18 -69.83 REMARK 500 11 SER A 5 42.43 38.07 REMARK 500 11 PRO A 40 -177.45 -69.78 REMARK 500 12 ARG A 11 48.85 -75.82 REMARK 500 12 PRO A 40 -163.79 -69.79 REMARK 500 12 PRO A 43 -177.48 -69.75 REMARK 500 12 SER A 44 44.42 -94.28 REMARK 500 13 GLU A 10 131.14 -38.84 REMARK 500 13 ARG A 11 40.21 -103.31 REMARK 500 13 GLN A 32 -30.04 -36.36 REMARK 500 13 SER A 41 118.08 -36.26 REMARK 500 14 GLU A 10 44.52 -99.40 REMARK 500 14 THR A 36 77.35 -59.72 REMARK 500 14 GLU A 38 142.78 -34.74 REMARK 500 14 PRO A 40 -177.24 -69.72 REMARK 500 15 SER A 6 -61.45 -94.70 REMARK 500 15 THR A 8 170.49 -54.80 REMARK 500 15 GLN A 32 -28.34 -37.60 REMARK 500 15 PRO A 40 88.47 -69.73 REMARK 500 15 SER A 44 137.55 -175.05 REMARK 500 REMARK 500 THIS ENTRY HAS 68 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 181 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 15 SG REMARK 620 2 CYS A 18 SG 105.4 REMARK 620 3 HIS A 31 NE2 111.8 95.3 REMARK 620 4 HIS A 35 NE2 113.6 113.6 115.5 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 181 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HSO003006001.10 RELATED DB: TARGETDB DBREF 2YTP A 8 40 UNP Q5JVG2 ZN484_HUMAN 687 719 SEQADV 2YTP GLY A 1 UNP Q5JVG2 EXPRESSION TAG SEQADV 2YTP SER A 2 UNP Q5JVG2 EXPRESSION TAG SEQADV 2YTP SER A 3 UNP Q5JVG2 EXPRESSION TAG SEQADV 2YTP GLY A 4 UNP Q5JVG2 EXPRESSION TAG SEQADV 2YTP SER A 5 UNP Q5JVG2 EXPRESSION TAG SEQADV 2YTP SER A 6 UNP Q5JVG2 EXPRESSION TAG SEQADV 2YTP GLY A 7 UNP Q5JVG2 EXPRESSION TAG SEQADV 2YTP SER A 41 UNP Q5JVG2 EXPRESSION TAG SEQADV 2YTP GLY A 42 UNP Q5JVG2 EXPRESSION TAG SEQADV 2YTP PRO A 43 UNP Q5JVG2 EXPRESSION TAG SEQADV 2YTP SER A 44 UNP Q5JVG2 EXPRESSION TAG SEQADV 2YTP SER A 45 UNP Q5JVG2 EXPRESSION TAG SEQADV 2YTP GLY A 46 UNP Q5JVG2 EXPRESSION TAG SEQRES 1 A 46 GLY SER SER GLY SER SER GLY THR GLY GLU ARG HIS TYR SEQRES 2 A 46 GLU CYS SER GLU CYS GLY LYS ALA PHE ALA ARG LYS SER SEQRES 3 A 46 THR LEU ILE MET HIS GLN ARG ILE HIS THR GLY GLU LYS SEQRES 4 A 46 PRO SER GLY PRO SER SER GLY HET ZN A 181 1 HETNAM ZN ZINC ION FORMUL 2 ZN ZN 2+ HELIX 1 1 ARG A 24 ARG A 33 1 10 SHEET 1 A 2 TYR A 13 GLU A 14 0 SHEET 2 A 2 ALA A 21 PHE A 22 -1 O PHE A 22 N TYR A 13 LINK SG CYS A 15 ZN ZN A 181 1555 1555 2.39 LINK SG CYS A 18 ZN ZN A 181 1555 1555 2.39 LINK NE2 HIS A 31 ZN ZN A 181 1555 1555 2.10 LINK NE2 HIS A 35 ZN ZN A 181 1555 1555 2.05 SITE 1 AC1 4 CYS A 15 CYS A 18 HIS A 31 HIS A 35 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1