HEADER STRUCTURAL PROTEIN 05-APR-07 2YTW TITLE SOLUTION STRUCTURE OF THE PDZ-DOMAIN OF HUMAN PROTEASE HTRA 1 TITLE 2 PRECURSOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: SERINE PROTEASE HTRA1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: PDZ DOMAIN; COMPND 5 SYNONYM: L56, SERINE PROTEASE 11; COMPND 6 EC: 3.4.21.-; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: HTRA1; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P060123-16; SOURCE 8 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS KEYWDS PROTEIN REGULATION, IGF-BINDING PROTEIN CLEAVAGE, PEPTIDASE, KEYWDS 2 STRUCTURAL GENOMICS, NPPSFA, NATIONAL PROJECT ON PROTEIN STRUCTURAL KEYWDS 3 AND FUNCTIONAL ANALYSES, RIKEN STRUCTURAL GENOMICS/PROTEOMICS KEYWDS 4 INITIATIVE, RSGI, STRUCTURAL PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR A.K.GORONCY,K.SAITO,S.KOSHIBA,S.WATANABE,T.HARADA,T.KIGAWA, AUTHOR 2 S.YOKOYAMA,RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE (RSGI) REVDAT 3 16-MAR-22 2YTW 1 REMARK SEQADV REVDAT 2 24-FEB-09 2YTW 1 VERSN REVDAT 1 08-APR-08 2YTW 0 JRNL AUTH A.K.GORONCY,K.SAITO,S.KOSHIBA,S.WATANABE,T.HARADA,T.KIGAWA, JRNL AUTH 2 S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF THE PDZ-DOMAIN OF HUMAN PROTEASE HTRA JRNL TITL 2 1 PRECURSOR JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 2.2.2 REMARK 3 AUTHORS : P.GUNTERT ET AL. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2YTW COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 26-JUN-07. REMARK 100 THE DEPOSITION ID IS D_1000027128. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 296 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120 MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.23MM PDZ DOMAIN, 20MM D-TRIS REMARK 210 -HCL, 100MM NACL, 1MM D-DTT, REMARK 210 0.02% NAN3, 90% H2O, 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY; 3D_13C REMARK 210 -SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CYANA 2.2.2, XWINNMR 3.5, REMARK 210 NMRPIPE 20060702, NMRVIEW 5.0.4, REMARK 210 KUJIRA 0.9821 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 6 81.17 -160.11 REMARK 500 1 GLN A 9 97.88 62.05 REMARK 500 1 LYS A 11 98.84 -62.47 REMARK 500 1 ILE A 21 16.41 -148.22 REMARK 500 1 SER A 27 108.71 -52.15 REMARK 500 1 PRO A 44 -170.11 -69.74 REMARK 500 1 ASP A 45 42.93 -94.17 REMARK 500 1 ILE A 47 29.46 -152.80 REMARK 500 1 GLU A 54 135.67 -176.13 REMARK 500 1 LEU A 66 108.24 -57.97 REMARK 500 1 ASN A 104 34.69 -159.26 REMARK 500 2 SER A 2 -66.63 -137.42 REMARK 500 2 SER A 3 -66.72 -158.27 REMARK 500 2 ALA A 10 -170.46 55.85 REMARK 500 2 ILE A 21 15.44 -146.59 REMARK 500 2 SER A 27 108.68 -52.12 REMARK 500 2 PRO A 44 -170.07 -69.80 REMARK 500 2 ASP A 45 43.25 -93.88 REMARK 500 2 ILE A 47 29.57 -152.77 REMARK 500 2 GLU A 54 141.00 -176.64 REMARK 500 2 ASN A 104 36.89 -154.57 REMARK 500 3 SER A 5 -171.74 58.56 REMARK 500 3 SER A 6 -48.97 -130.58 REMARK 500 3 ARG A 8 42.33 -159.35 REMARK 500 3 GLN A 9 179.13 58.80 REMARK 500 3 ALA A 14 -179.48 -62.46 REMARK 500 3 ILE A 15 90.55 -68.35 REMARK 500 3 ILE A 21 15.73 -147.08 REMARK 500 3 SER A 27 108.71 -52.07 REMARK 500 3 PRO A 44 -170.13 -69.79 REMARK 500 3 ASP A 45 43.58 -93.98 REMARK 500 3 ILE A 47 29.56 -152.88 REMARK 500 3 GLU A 54 142.65 -176.37 REMARK 500 3 LEU A 66 105.50 -59.59 REMARK 500 3 ASN A 104 37.66 -156.53 REMARK 500 4 ARG A 8 96.48 61.18 REMARK 500 4 THR A 16 -177.98 62.27 REMARK 500 4 ILE A 21 16.21 -148.28 REMARK 500 4 SER A 27 108.67 -52.04 REMARK 500 4 PRO A 44 -170.15 -69.82 REMARK 500 4 ASP A 45 42.96 -94.27 REMARK 500 4 ILE A 47 29.18 -152.85 REMARK 500 4 GLU A 54 135.63 -175.85 REMARK 500 4 LEU A 66 107.30 -57.04 REMARK 500 4 ASN A 104 35.27 -158.45 REMARK 500 5 SER A 5 77.06 -169.45 REMARK 500 5 ILE A 21 15.65 -147.05 REMARK 500 5 SER A 27 109.28 -52.02 REMARK 500 5 PRO A 44 -170.17 -69.79 REMARK 500 5 ASP A 45 43.30 -94.33 REMARK 500 REMARK 500 THIS ENTRY HAS 228 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HSK003002246.1 RELATED DB: TARGETDB DBREF 2YTW A 8 118 UNP Q92743 HTRA1_HUMAN 370 480 SEQADV 2YTW GLY A 1 UNP Q92743 EXPRESSION TAG SEQADV 2YTW SER A 2 UNP Q92743 EXPRESSION TAG SEQADV 2YTW SER A 3 UNP Q92743 EXPRESSION TAG SEQADV 2YTW GLY A 4 UNP Q92743 EXPRESSION TAG SEQADV 2YTW SER A 5 UNP Q92743 EXPRESSION TAG SEQADV 2YTW SER A 6 UNP Q92743 EXPRESSION TAG SEQADV 2YTW GLY A 7 UNP Q92743 EXPRESSION TAG SEQRES 1 A 118 GLY SER SER GLY SER SER GLY ARG GLN ALA LYS GLY LYS SEQRES 2 A 118 ALA ILE THR LYS LYS LYS TYR ILE GLY ILE ARG MET MET SEQRES 3 A 118 SER LEU THR SER SER LYS ALA LYS GLU LEU LYS ASP ARG SEQRES 4 A 118 HIS ARG ASP PHE PRO ASP VAL ILE SER GLY ALA TYR ILE SEQRES 5 A 118 ILE GLU VAL ILE PRO ASP THR PRO ALA GLU ALA GLY GLY SEQRES 6 A 118 LEU LYS GLU ASN ASP VAL ILE ILE SER ILE ASN GLY GLN SEQRES 7 A 118 SER VAL VAL SER ALA ASN ASP VAL SER ASP VAL ILE LYS SEQRES 8 A 118 ARG GLU SER THR LEU ASN MET VAL VAL ARG ARG GLY ASN SEQRES 9 A 118 GLU ASP ILE MET ILE THR VAL ILE PRO GLU GLU ILE ASP SEQRES 10 A 118 PRO HELIX 1 1 THR A 29 HIS A 40 1 12 HELIX 2 2 SER A 82 GLU A 93 1 12 SHEET 1 A 2 LYS A 18 TYR A 20 0 SHEET 2 A 2 GLU A 114 ILE A 116 -1 O ILE A 116 N LYS A 18 SHEET 1 B 4 ARG A 24 SER A 27 0 SHEET 2 B 4 ALA A 50 GLU A 54 -1 O GLU A 54 N ARG A 24 SHEET 3 B 4 VAL A 71 ILE A 75 -1 O ILE A 72 N ALA A 50 SHEET 4 B 4 GLN A 78 SER A 79 -1 O GLN A 78 N ILE A 75 SHEET 1 C 5 ARG A 24 SER A 27 0 SHEET 2 C 5 ALA A 50 GLU A 54 -1 O GLU A 54 N ARG A 24 SHEET 3 C 5 VAL A 71 ILE A 75 -1 O ILE A 72 N ALA A 50 SHEET 4 C 5 LEU A 96 ARG A 102 -1 O VAL A 99 N SER A 74 SHEET 5 C 5 GLU A 105 VAL A 111 -1 O ILE A 107 N VAL A 100 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1