HEADER RNA BINDING PROTEIN 05-APR-07 2YTX TITLE SOLUTION STRUCTURE OF THE SECOND COLD-SHOCK DOMAIN OF THE HUMAN TITLE 2 KIAA0885 PROTEIN (UNR PROTEIN) COMPND MOL_ID: 1; COMPND 2 MOLECULE: COLD SHOCK DOMAIN-CONTAINING PROTEIN E1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: SECOND COLD-SHOCK DOMAIN; COMPND 5 SYNONYM: UNR PROTEIN, N-RAS UPSTREAM GENE PROTEIN; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: KIAA0885; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P040114-38; SOURCE 8 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS KEYWDS CELL-FREE PROTEIN SYNTHESIS, BETA-BARREL, TRANSLATIONAL REGULATION, KEYWDS 2 RNA CHAPERONE, RNA/DNA BINDING, QB FOLD, GREEK-KEY TOPOLOGY, UNR KEYWDS 3 PROTEIN, STRUCTURAL GENOMICS, NPPSFA, NATIONAL PROJECT ON PROTEIN KEYWDS 4 STRUCTURAL AND FUNCTIONAL ANALYSES, RIKEN STRUCTURAL KEYWDS 5 GENOMICS/PROTEOMICS INITIATIVE, RSGI, RNA BINDING PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR A.K.GORONCY,T.TOMIZAWA,S.KOSHIBA,M.INOUE,T.KIGAWA,S.YOKOYAMA,RIKEN AUTHOR 2 STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE (RSGI) REVDAT 3 01-SEP-10 2YTX 1 JRNL REVDAT 2 24-FEB-09 2YTX 1 VERSN REVDAT 1 08-APR-08 2YTX 0 JRNL AUTH A.K.GORONCY,S.KOSHIBA,N.TOCHIO,T.TOMIZAWA,M.INOUE, JRNL AUTH 2 S.WATANABE,T.HARADA,A.TANAKA,O.OHARA,T.KIGAWA,S.YOKOYAMA JRNL TITL THE NMR SOLUTION STRUCTURES OF THE FIVE CONSTITUENT JRNL TITL 2 COLD-SHOCK DOMAINS (CSD) OF THE HUMAN UNR (UPSTREAM OF JRNL TITL 3 N-RAS) PROTEIN. JRNL REF J.STRUCT.FUNCT.GENOM. V. 11 181 2010 JRNL REFN ISSN 1345-711X JRNL PMID 20213426 JRNL DOI 10.1007/S10969-010-9081-Z REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 2.2.2 REMARK 3 AUTHORS : P.GUNTERT ET AL. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2YTX COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 26-JUN-07. REMARK 100 THE RCSB ID CODE IS RCSB027129. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 296 REMARK 210 PH : 6.0 REMARK 210 IONIC STRENGTH : 120 MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.02MM COLD-SHOCK DOMAIN, 20MM REMARK 210 PHOSPHATE BUFFER NA, 100MM NACL, REMARK 210 1MM D-DTT, 0.02% NAN3, 90% H2O, REMARK 210 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY; 3D_13C- REMARK 210 SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CYANA 2.2.2, XWINNMR 3.5, REMARK 210 NMRPIPE 20060702, NMRVIEW 5.0.4, REMARK 210 KUJIRA 0.9821 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASN A 8 87.76 52.71 REMARK 500 1 MET A 10 150.00 -42.45 REMARK 500 1 GLN A 16 -74.24 -102.13 REMARK 500 1 ALA A 29 -45.78 -163.05 REMARK 500 1 LYS A 50 79.06 -106.37 REMARK 500 1 ASP A 68 50.34 -97.28 REMARK 500 1 ASP A 90 52.63 -106.51 REMARK 500 1 SER A 95 164.97 62.88 REMARK 500 2 MET A 10 158.46 63.24 REMARK 500 2 GLN A 16 -50.42 -173.89 REMARK 500 2 VAL A 23 104.24 -52.02 REMARK 500 2 GLU A 28 39.16 -98.27 REMARK 500 2 ALA A 29 -45.14 -166.77 REMARK 500 2 ASP A 37 26.40 -160.21 REMARK 500 2 ASP A 60 169.54 61.31 REMARK 500 2 PRO A 82 -177.18 -69.78 REMARK 500 2 GLN A 83 83.89 62.97 REMARK 500 2 PHE A 88 172.46 -58.33 REMARK 500 2 ASP A 90 88.65 -166.57 REMARK 500 2 SER A 92 -170.97 53.44 REMARK 500 2 SER A 96 -171.29 61.74 REMARK 500 3 SER A 2 64.42 -116.70 REMARK 500 3 ILE A 9 140.05 -170.29 REMARK 500 3 MET A 10 156.07 63.60 REMARK 500 3 LEU A 11 -70.29 -171.49 REMARK 500 3 LEU A 12 178.69 58.46 REMARK 500 3 LYS A 14 -42.39 -159.42 REMARK 500 3 GLN A 16 76.35 -105.70 REMARK 500 3 ALA A 17 121.44 -176.45 REMARK 500 3 VAL A 23 102.77 -52.39 REMARK 500 3 GLU A 28 47.26 -92.87 REMARK 500 3 ALA A 29 -44.31 -177.83 REMARK 500 3 ARG A 35 -74.23 -52.94 REMARK 500 3 VAL A 39 41.89 -103.96 REMARK 500 3 LYS A 50 78.50 -117.55 REMARK 500 3 ASP A 60 167.39 61.78 REMARK 500 3 ASN A 70 107.95 -54.63 REMARK 500 3 ASP A 77 74.33 53.64 REMARK 500 4 SER A 6 104.95 -165.25 REMARK 500 4 LYS A 13 -177.67 59.84 REMARK 500 4 LYS A 14 -41.72 -165.24 REMARK 500 4 GLN A 16 -74.09 -90.76 REMARK 500 4 GLU A 28 46.02 -107.96 REMARK 500 4 ALA A 29 -43.03 -173.83 REMARK 500 4 ASP A 68 50.80 -107.68 REMARK 500 4 THR A 85 107.46 64.21 REMARK 500 4 SER A 96 132.47 -174.17 REMARK 500 5 SER A 6 -73.93 -60.04 REMARK 500 5 LEU A 12 172.67 -57.73 REMARK 500 5 GLN A 16 -62.35 -160.41 REMARK 500 REMARK 500 THIS ENTRY HAS 233 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HSK002000864.4 RELATED DB: TARGETDB DBREF 2YTX A 8 91 UNP O75534 CSDE1_HUMAN 175 258 SEQADV 2YTX GLY A 1 UNP O75534 EXPRESSION TAG SEQADV 2YTX SER A 2 UNP O75534 EXPRESSION TAG SEQADV 2YTX SER A 3 UNP O75534 EXPRESSION TAG SEQADV 2YTX GLY A 4 UNP O75534 EXPRESSION TAG SEQADV 2YTX SER A 5 UNP O75534 EXPRESSION TAG SEQADV 2YTX SER A 6 UNP O75534 EXPRESSION TAG SEQADV 2YTX GLY A 7 UNP O75534 EXPRESSION TAG SEQADV 2YTX SER A 92 UNP O75534 EXPRESSION TAG SEQADV 2YTX GLY A 93 UNP O75534 EXPRESSION TAG SEQADV 2YTX PRO A 94 UNP O75534 EXPRESSION TAG SEQADV 2YTX SER A 95 UNP O75534 EXPRESSION TAG SEQADV 2YTX SER A 96 UNP O75534 EXPRESSION TAG SEQADV 2YTX GLY A 97 UNP O75534 EXPRESSION TAG SEQRES 1 A 97 GLY SER SER GLY SER SER GLY ASN ILE MET LEU LEU LYS SEQRES 2 A 97 LYS LYS GLN ALA ARG CYS GLN GLY VAL VAL CYS ALA MET SEQRES 3 A 97 LYS GLU ALA PHE GLY PHE ILE GLU ARG GLY ASP VAL VAL SEQRES 4 A 97 LYS GLU ILE PHE PHE HIS TYR SER GLU PHE LYS GLY ASP SEQRES 5 A 97 LEU GLU THR LEU GLN PRO GLY ASP ASP VAL GLU PHE THR SEQRES 6 A 97 ILE LYS ASP ARG ASN GLY LYS GLU VAL ALA THR ASP VAL SEQRES 7 A 97 ARG LEU LEU PRO GLN GLY THR VAL ILE PHE GLU ASP ILE SEQRES 8 A 97 SER GLY PRO SER SER GLY SHEET 1 A 5 ILE A 42 HIS A 45 0 SHEET 2 A 5 PHE A 30 GLU A 34 -1 N GLY A 31 O PHE A 44 SHEET 3 A 5 CYS A 19 VAL A 23 -1 N VAL A 22 O GLU A 34 SHEET 4 A 5 ASP A 61 ILE A 66 -1 O VAL A 62 N GLY A 21 SHEET 5 A 5 ALA A 75 LEU A 80 -1 O ARG A 79 N GLU A 63 CISPEP 1 GLN A 57 PRO A 58 1 0.00 CISPEP 2 GLN A 57 PRO A 58 2 -0.01 CISPEP 3 GLN A 57 PRO A 58 3 -0.01 CISPEP 4 GLN A 57 PRO A 58 4 -0.05 CISPEP 5 GLN A 57 PRO A 58 5 0.00 CISPEP 6 GLN A 57 PRO A 58 6 -0.03 CISPEP 7 GLN A 57 PRO A 58 7 -0.08 CISPEP 8 GLN A 57 PRO A 58 8 0.07 CISPEP 9 GLN A 57 PRO A 58 9 0.02 CISPEP 10 GLN A 57 PRO A 58 10 0.02 CISPEP 11 GLN A 57 PRO A 58 11 0.07 CISPEP 12 GLN A 57 PRO A 58 12 -0.04 CISPEP 13 GLN A 57 PRO A 58 13 -0.01 CISPEP 14 GLN A 57 PRO A 58 14 -0.01 CISPEP 15 GLN A 57 PRO A 58 15 0.04 CISPEP 16 GLN A 57 PRO A 58 16 -0.04 CISPEP 17 GLN A 57 PRO A 58 17 -0.03 CISPEP 18 GLN A 57 PRO A 58 18 0.00 CISPEP 19 GLN A 57 PRO A 58 19 0.04 CISPEP 20 GLN A 57 PRO A 58 20 -0.05 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1