HEADER TRANSFERASE 06-APR-07 2YUB TITLE SOLUTION STRUCTURE OF THE PDZ DOMAIN FROM MOUSE LIM DOMAIN KINASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: LIM DOMAIN KINASE 2; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: PDZ DOMAIN; COMPND 5 SYNONYM: LIMK-2; COMPND 6 EC: 2.7.11.1; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: LIMK2; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P041220-03; SOURCE 8 OTHER_DETAILS: CELL FREE PROTEIN SYNTHESIS KEYWDS PDZ DOMAIN, LIMK-2, STRUCTURAL GENOMICS, NPPSFA, NATIONAL PROJECT ON KEYWDS 2 PROTEIN STRUCTURAL AND FUNCTIONAL ANALYSES, RIKEN STRUCTURAL KEYWDS 3 GENOMICS/PROTEOMICS INITIATIVE, RSGI, TRANSFERASE EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR F.HAYASHI,T.SUETAKE,S.YOKOYAMA,RIKEN STRUCTURAL GENOMICS/PROTEOMICS AUTHOR 2 INITIATIVE (RSGI) REVDAT 3 16-MAR-22 2YUB 1 REMARK SEQADV REVDAT 2 24-FEB-09 2YUB 1 VERSN REVDAT 1 08-APR-08 2YUB 0 JRNL AUTH F.HAYASHI,T.SUETAKE,S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF THE PDZ DOMAIN FROM MOUSE LIM DOMAIN JRNL TITL 2 KINASE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : VNMR 6.1C, CYANA 2.1 REMARK 3 AUTHORS : VARIAN (VNMR), GUNTERT, P. (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE STRUCTURES ARE BASED ON A TOTAL OF REMARK 3 1438 RESTRAINTS, 1347 ARE NOE-DERIVED DISTANCE CONSTRAINTS, 91 REMARK 3 DIHEDRAL ANGLE RESTRAINTS. REMARK 4 REMARK 4 2YUB COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 27-JUN-07. REMARK 100 THE DEPOSITION ID IS D_1000027143. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 293 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.47MM U-15N, 13C-LABELED REMARK 210 PROTEIN; 20MM D-TRIS-HCL; 100MM REMARK 210 NACL; 1MM DTT; 0.02% NAN3; 90% REMARK 210 H2O, 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY; 3D_15N REMARK 210 -SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 20031121, NMRVIEW 5.0.4, REMARK 210 KUJIRA 0.9820, CYANA 2.1 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS, TARGET REMARK 210 FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: THE STRUCTURE WAS DETERMINED USING TRIPLE-RESONANCE NMR REMARK 210 SPECTROSCOPY. REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 2 -82.56 -43.52 REMARK 500 1 SER A 5 80.42 -156.92 REMARK 500 1 GLN A 9 171.87 -57.81 REMARK 500 1 LEU A 12 148.75 61.08 REMARK 500 1 TYR A 14 147.39 -178.84 REMARK 500 1 ALA A 23 -149.70 34.44 REMARK 500 1 THR A 25 40.61 73.91 REMARK 500 1 GLU A 26 -169.62 66.34 REMARK 500 1 CYS A 27 -164.23 43.88 REMARK 500 1 ARG A 29 -175.10 -52.64 REMARK 500 1 ALA A 38 -93.22 56.38 REMARK 500 1 SER A 40 -153.63 -122.89 REMARK 500 1 THR A 44 -35.41 -136.05 REMARK 500 1 ILE A 56 -88.34 -87.79 REMARK 500 1 SER A 57 158.68 162.20 REMARK 500 1 HIS A 65 154.54 176.52 REMARK 500 1 ASP A 68 -169.21 -77.77 REMARK 500 1 ARG A 82 151.00 -45.18 REMARK 500 1 GLN A 92 105.29 -52.77 REMARK 500 1 SER A 94 18.65 -150.58 REMARK 500 1 VAL A 106 143.32 -33.75 REMARK 500 1 ARG A 109 88.32 -66.50 REMARK 500 1 ASP A 111 -161.62 -64.29 REMARK 500 1 GLN A 112 44.55 -147.55 REMARK 500 1 PRO A 115 94.76 -69.77 REMARK 500 1 SER A 116 178.03 -53.12 REMARK 500 1 SER A 117 98.43 50.01 REMARK 500 2 SER A 2 83.01 49.76 REMARK 500 2 VAL A 8 92.62 41.29 REMARK 500 2 GLN A 9 50.60 -116.70 REMARK 500 2 TYR A 14 -92.34 -45.82 REMARK 500 2 THR A 25 56.98 -102.12 REMARK 500 2 CYS A 27 -67.98 -151.17 REMARK 500 2 ARG A 28 -168.23 -178.02 REMARK 500 2 SER A 40 -150.64 39.68 REMARK 500 2 ALA A 43 142.88 -35.18 REMARK 500 2 THR A 44 -32.62 -132.36 REMARK 500 2 LYS A 49 -72.70 -57.44 REMARK 500 2 SER A 57 152.78 78.54 REMARK 500 2 PRO A 58 81.27 -69.78 REMARK 500 2 ASN A 59 -36.09 -160.43 REMARK 500 2 ASN A 74 -3.97 74.83 REMARK 500 2 LEU A 81 157.94 -44.06 REMARK 500 2 ASP A 104 68.54 -116.98 REMARK 500 2 VAL A 106 143.37 -33.73 REMARK 500 2 LEU A 110 87.25 -157.89 REMARK 500 2 GLN A 112 -37.11 -160.01 REMARK 500 2 SER A 113 -51.84 -126.85 REMARK 500 3 SER A 2 65.20 -162.42 REMARK 500 3 SER A 6 -170.69 -175.87 REMARK 500 REMARK 500 THIS ENTRY HAS 392 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: MMI002018350.1 RELATED DB: TARGETDB DBREF 2YUB A 8 112 UNP O54785 LIMK2_MOUSE 142 246 SEQADV 2YUB GLY A 1 UNP O54785 EXPRESSION TAG SEQADV 2YUB SER A 2 UNP O54785 EXPRESSION TAG SEQADV 2YUB SER A 3 UNP O54785 EXPRESSION TAG SEQADV 2YUB GLY A 4 UNP O54785 EXPRESSION TAG SEQADV 2YUB SER A 5 UNP O54785 EXPRESSION TAG SEQADV 2YUB SER A 6 UNP O54785 EXPRESSION TAG SEQADV 2YUB GLY A 7 UNP O54785 EXPRESSION TAG SEQADV 2YUB SER A 113 UNP O54785 EXPRESSION TAG SEQADV 2YUB GLY A 114 UNP O54785 EXPRESSION TAG SEQADV 2YUB PRO A 115 UNP O54785 EXPRESSION TAG SEQADV 2YUB SER A 116 UNP O54785 EXPRESSION TAG SEQADV 2YUB SER A 117 UNP O54785 EXPRESSION TAG SEQADV 2YUB GLY A 118 UNP O54785 EXPRESSION TAG SEQRES 1 A 118 GLY SER SER GLY SER SER GLY VAL GLN ASP GLN LEU PRO SEQRES 2 A 118 TYR SER VAL THR LEU ILE SER MET PRO ALA THR THR GLU SEQRES 3 A 118 CYS ARG ARG GLY PHE SER VAL THR VAL GLU SER ALA SER SEQRES 4 A 118 SER ASN TYR ALA THR THR VAL GLN VAL LYS GLU VAL ASN SEQRES 5 A 118 ARG MET HIS ILE SER PRO ASN ASN ARG ASN ALA ILE HIS SEQRES 6 A 118 PRO GLY ASP ARG ILE LEU GLU ILE ASN GLY THR PRO VAL SEQRES 7 A 118 ARG THR LEU ARG VAL GLU GLU VAL GLU ASP ALA ILE LYS SEQRES 8 A 118 GLN THR SER GLN THR LEU GLN LEU LEU ILE GLU HIS ASP SEQRES 9 A 118 PRO VAL PRO GLN ARG LEU ASP GLN SER GLY PRO SER SER SEQRES 10 A 118 GLY HELIX 1 1 ASN A 59 ILE A 64 1 6 HELIX 2 2 ARG A 82 GLN A 92 1 11 SHEET 1 A 3 SER A 15 MET A 21 0 SHEET 2 A 3 LEU A 97 HIS A 103 -1 O ILE A 101 N THR A 17 SHEET 3 A 3 ILE A 70 ILE A 73 -1 N LEU A 71 O LEU A 100 SHEET 1 B 2 SER A 32 GLU A 36 0 SHEET 2 B 2 THR A 45 GLU A 50 -1 O GLN A 47 N THR A 34 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1