HEADER RNA BINDING PROTEIN 06-APR-07 2YUE TITLE SOLUTION STRUCTURE OF THE NEUZ (NHR) DOMAIN IN NEURALIZED FROM TITLE 2 DROSOPHILA MELANOGASTER COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN NEURALIZED; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: NEUZ(NHR) DOMAIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DROSOPHILA MELANOGASTER; SOURCE 3 ORGANISM_COMMON: FRUIT FLY; SOURCE 4 ORGANISM_TAXID: 7227; SOURCE 5 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 6 EXPRESSION_SYSTEM_PLASMID: P061002-04; SOURCE 7 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS KEYWDS STRUCTURE GENOMICS, NEUZ(NHR) DOMAIN, NEURALIZED, STRUCTURAL KEYWDS 2 GENOMICS, NPPSFA, NATIONAL PROJECT ON PROTEIN STRUCTURAL AND KEYWDS 3 FUNCTIONAL ANALYSES, RIKEN STRUCTURAL GENOMICS/PROTEOMICS KEYWDS 4 INITIATIVE, RSGI, RNA BINDING PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR F.HE,Y.MUTO,M.INOUE,T.KIGAWA,M.SHIROUZU,T.TARADA,S.YOKOYAMA,RIKEN AUTHOR 2 STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE (RSGI) REVDAT 4 23-MAR-22 2YUE 1 REMARK SEQADV REVDAT 3 02-FEB-10 2YUE 1 JRNL REVDAT 2 24-FEB-09 2YUE 1 VERSN REVDAT 1 09-OCT-07 2YUE 0 JRNL AUTH F.HE,K.SAITO,N.KOBAYASHI,T.HARADA,S.WATANABE,T.KIGAWA, JRNL AUTH 2 P.GUNTERT,O.OHARA,A.TANAKA,S.UNZAI,Y.MUTO,S.YOKOYAMA JRNL TITL STRUCTURAL AND FUNCTIONAL CHARACTERIZATION OF THE NHR1 JRNL TITL 2 DOMAIN OF THE DROSOPHILA NEURALIZED E3 LIGASE IN THE NOTCH JRNL TITL 3 SIGNALING PATHWAY. JRNL REF J.MOL.BIOL. V. 393 478 2009 JRNL REFN ISSN 0022-2836 JRNL PMID 19683535 JRNL DOI 10.1016/J.JMB.2009.08.020 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XWINNMR 3.5, CYANA 2.1 REMARK 3 AUTHORS : BRUKER (XWINNMR), GUNTERT, P. (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2YUE COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 27-JUN-07. REMARK 100 THE DEPOSITION ID IS D_1000027146. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.0MM 13C, 15N-LABELED PROTEIN; REMARK 210 20MM D-TRIS-HCL(PH 7.0); 100MM REMARK 210 NACL; 1MM D-DTT; 0.02% NAN3; 90% REMARK 210 H2O, 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY; 3D_15N REMARK 210 -SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 20030801, NMRVIEW 5.0.4, REMARK 210 KUJIRA 0.9820, CYANA 2.1 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS, TARGET REMARK 210 FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 2 175.68 62.01 REMARK 500 1 SER A 3 -176.50 58.35 REMARK 500 1 ASN A 18 63.46 -101.79 REMARK 500 1 THR A 26 113.48 179.28 REMARK 500 1 SER A 33 -171.47 62.97 REMARK 500 1 PHE A 34 -64.01 -120.79 REMARK 500 1 ARG A 36 90.38 55.40 REMARK 500 1 ALA A 37 56.48 -161.72 REMARK 500 1 GLU A 49 107.38 -51.86 REMARK 500 1 ASN A 60 74.90 -119.81 REMARK 500 1 ASN A 61 -40.48 -172.90 REMARK 500 1 TRP A 62 -177.34 -67.84 REMARK 500 1 THR A 81 59.20 -151.46 REMARK 500 1 PRO A 83 -170.87 -69.79 REMARK 500 1 CYS A 87 157.29 179.63 REMARK 500 1 ASP A 89 -73.78 -45.24 REMARK 500 1 THR A 91 -56.85 -178.52 REMARK 500 1 CYS A 106 60.11 -115.68 REMARK 500 1 TYR A 151 89.35 -153.12 REMARK 500 1 ASN A 153 50.13 -99.49 REMARK 500 1 CYS A 154 140.90 -173.98 REMARK 500 1 THR A 155 -57.88 -122.47 REMARK 500 1 TYR A 165 -75.17 -86.40 REMARK 500 1 MET A 166 171.52 -55.53 REMARK 500 1 TYR A 167 -41.56 -156.63 REMARK 500 2 SER A 2 78.64 56.65 REMARK 500 2 THR A 26 113.28 178.90 REMARK 500 2 SER A 33 -75.14 -51.74 REMARK 500 2 PHE A 34 -36.58 -179.84 REMARK 500 2 ARG A 36 89.01 63.21 REMARK 500 2 ASN A 60 66.39 -102.27 REMARK 500 2 ASN A 61 -53.02 -153.90 REMARK 500 2 TRP A 62 -176.96 -61.14 REMARK 500 2 ILE A 66 179.11 -57.24 REMARK 500 2 THR A 81 56.85 -156.11 REMARK 500 2 CYS A 87 155.28 179.48 REMARK 500 2 ASP A 89 -73.37 -43.14 REMARK 500 2 THR A 91 -61.12 -178.82 REMARK 500 2 ALA A 98 147.87 -178.33 REMARK 500 2 GLU A 129 71.86 -157.75 REMARK 500 2 TYR A 151 -53.41 -178.32 REMARK 500 2 ASN A 153 90.56 53.64 REMARK 500 2 CYS A 154 -171.15 -177.97 REMARK 500 2 THR A 155 -35.84 -174.84 REMARK 500 2 TYR A 167 -52.85 -145.09 REMARK 500 3 SER A 6 -171.93 -171.80 REMARK 500 3 PRO A 8 -179.09 -69.75 REMARK 500 3 ASN A 18 44.77 -92.17 REMARK 500 3 THR A 26 110.64 179.19 REMARK 500 3 PHE A 31 63.98 -117.20 REMARK 500 REMARK 500 THIS ENTRY HAS 378 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 650 REMARK 650 HELIX REMARK 650 DETERMINATION METHOD: AUTHOR DETERMINED REMARK 700 REMARK 700 SHEET REMARK 700 DETERMINATION METHOD: AUTHOR DETERMINED REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: MY_001000056.1 RELATED DB: TARGETDB DBREF 2YUE A 8 168 UNP P29503 NEUR_DROME 106 266 SEQADV 2YUE GLY A 1 UNP P29503 EXPRESSION TAG SEQADV 2YUE SER A 2 UNP P29503 EXPRESSION TAG SEQADV 2YUE SER A 3 UNP P29503 EXPRESSION TAG SEQADV 2YUE GLY A 4 UNP P29503 EXPRESSION TAG SEQADV 2YUE SER A 5 UNP P29503 EXPRESSION TAG SEQADV 2YUE SER A 6 UNP P29503 EXPRESSION TAG SEQADV 2YUE GLY A 7 UNP P29503 EXPRESSION TAG SEQRES 1 A 168 GLY SER SER GLY SER SER GLY PRO LEU GLN PHE HIS SER SEQRES 2 A 168 VAL HIS GLY ASP ASN ILE ARG ILE SER ARG ASP GLY THR SEQRES 3 A 168 LEU ALA ARG ARG PHE GLU SER PHE CYS ARG ALA ILE THR SEQRES 4 A 168 PHE SER ALA ARG PRO VAL ARG ILE ASN GLU ARG ILE CYS SEQRES 5 A 168 VAL LYS PHE ALA GLU ILE SER ASN ASN TRP ASN GLY GLY SEQRES 6 A 168 ILE ARG PHE GLY PHE THR SER ASN ASP PRO VAL THR LEU SEQRES 7 A 168 GLU GLY THR LEU PRO LYS TYR ALA CYS PRO ASP LEU THR SEQRES 8 A 168 ASN ARG PRO GLY PHE TRP ALA LYS ALA LEU HIS GLU GLN SEQRES 9 A 168 TYR CYS GLU LYS ASP ASN ILE LEU TYR TYR TYR VAL ASN SEQRES 10 A 168 GLY ALA GLY ASP VAL ILE TYR GLY ILE ASN ASN GLU GLU SEQRES 11 A 168 LYS GLY VAL ILE LEU THR GLY ILE ASP THR ARG SER LEU SEQRES 12 A 168 LEU TRP THR VAL ILE ASP ILE TYR GLY ASN CYS THR GLY SEQRES 13 A 168 ILE GLU PHE LEU ASP SER ARG ILE TYR MET TYR GLN HELIX 1 1 PRO A 75 THR A 77 5 3 HELIX 2 2 ASP A 89 ASN A 92 1 4 HELIX 3 3 GLU A 103 TYR A 105 5 3 HELIX 4 4 SER A 162 TYR A 165 1 4 SHEET 1 A 5 PHE A 11 HIS A 15 0 SHEET 2 A 5 ILE A 38 SER A 41 -1 SHEET 3 A 5 TRP A 145 ASP A 149 -1 SHEET 4 A 5 ARG A 67 THR A 71 -1 SHEET 5 A 5 PHE A 96 ALA A 100 -1 SHEET 1 B 2 ILE A 19 ILE A 21 0 SHEET 2 B 2 ALA A 28 ARG A 30 -1 SHEET 1 C 5 GLU A 130 THR A 136 0 SHEET 2 C 5 ASP A 121 ILE A 126 -1 SHEET 3 C 5 ILE A 111 VAL A 116 -1 SHEET 4 C 5 ILE A 51 GLU A 57 -1 SHEET 5 C 5 GLY A 156 LEU A 160 -1 CISPEP 1 CYS A 87 PRO A 88 1 0.03 CISPEP 2 CYS A 87 PRO A 88 2 -0.03 CISPEP 3 CYS A 87 PRO A 88 3 0.07 CISPEP 4 CYS A 87 PRO A 88 4 0.04 CISPEP 5 CYS A 87 PRO A 88 5 0.11 CISPEP 6 CYS A 87 PRO A 88 6 0.00 CISPEP 7 CYS A 87 PRO A 88 7 0.12 CISPEP 8 CYS A 87 PRO A 88 8 0.09 CISPEP 9 CYS A 87 PRO A 88 9 0.10 CISPEP 10 CYS A 87 PRO A 88 10 0.05 CISPEP 11 CYS A 87 PRO A 88 11 0.10 CISPEP 12 CYS A 87 PRO A 88 12 0.01 CISPEP 13 CYS A 87 PRO A 88 13 0.11 CISPEP 14 CYS A 87 PRO A 88 14 0.05 CISPEP 15 CYS A 87 PRO A 88 15 0.12 CISPEP 16 CYS A 87 PRO A 88 16 0.00 CISPEP 17 CYS A 87 PRO A 88 17 0.03 CISPEP 18 CYS A 87 PRO A 88 18 0.04 CISPEP 19 CYS A 87 PRO A 88 19 0.13 CISPEP 20 CYS A 87 PRO A 88 20 0.11 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1