HEADER TRANSCRIPTION 06-APR-07 2YUF TITLE SOLUTION STRUCTURE OF THE NCD2 DOMAIN IN HUMAN TRANSCRIPTIONAL TITLE 2 REPRESSOR NAB1 PROTEIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: NGFI-A-BINDING PROTEIN 1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: NCD2 DOMAIN; COMPND 5 SYNONYM: NAB1, EGR-1-BINDING PROTEIN 1, TRANSCRIPTIONAL REGULATORY COMPND 6 PROTEIN P54; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: AB1350_G01; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P051025-05; SOURCE 8 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS KEYWDS TRANSCRIPTIONAL REPRESSOR, STRUCTURAL GENOMICS, NPPSFA, NATIONAL KEYWDS 2 PROJECT ON PROTEIN STRUCTURAL AND FUNCTIONAL ANALYSES, RIKEN KEYWDS 3 STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE, RSGI, TRANSCRIPTION EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR K.SAITO,T.KIGAWA,S.YOKOYAMA,RIKEN STRUCTURAL GENOMICS/PROTEOMICS AUTHOR 2 INITIATIVE (RSGI) REVDAT 3 16-MAR-22 2YUF 1 REMARK SEQADV REVDAT 2 24-FEB-09 2YUF 1 VERSN REVDAT 1 08-APR-08 2YUF 0 JRNL AUTH K.SAITO,T.KIGAWA,S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF THE NCD2 DOMAIN IN HUMAN JRNL TITL 2 TRANSCRIPTIONAL REPRESSOR NAB1 PROTEIN JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2YUF COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 27-JUN-07. REMARK 100 THE DEPOSITION ID IS D_1000027147. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 5.8 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1MM PROTEIN, 20MM D-ACETATE, REMARK 210 PH5.8, 100MM NACL, 1MM D-DTT, 90% REMARK 210 H2O, 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY; 3D_13C REMARK 210 -SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XWINNMR 3.5, NMRPIPE 2002, REMARK 210 NMRVIEW 5, CNS 1.1 REMARK 210 METHOD USED : NULL REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 2 166.38 60.28 REMARK 500 1 SER A 3 -64.93 -156.98 REMARK 500 1 ALA A 9 -71.85 -103.93 REMARK 500 1 ARG A 82 -174.68 59.93 REMARK 500 1 LYS A 83 31.49 -99.74 REMARK 500 1 HIS A 87 -46.44 -154.97 REMARK 500 1 LEU A 90 -49.85 -176.11 REMARK 500 1 THR A 132 171.49 60.19 REMARK 500 1 THR A 136 107.87 -168.34 REMARK 500 1 PRO A 139 -173.27 -53.50 REMARK 500 2 SER A 5 31.74 -98.93 REMARK 500 2 PRO A 30 175.94 -53.85 REMARK 500 2 LYS A 45 -46.63 -132.98 REMARK 500 2 MET A 57 172.96 -57.78 REMARK 500 2 SER A 72 90.49 -56.96 REMARK 500 2 ALA A 73 126.83 -175.90 REMARK 500 2 ARG A 82 179.95 60.60 REMARK 500 2 ASP A 84 -78.81 64.28 REMARK 500 2 LEU A 88 -178.40 -63.89 REMARK 500 2 THR A 89 -53.50 -152.85 REMARK 500 2 LEU A 90 -40.60 -176.14 REMARK 500 2 TYR A 131 40.42 -152.00 REMARK 500 2 ARG A 134 49.58 -92.24 REMARK 500 2 PRO A 139 170.16 -53.60 REMARK 500 2 SER A 140 -56.62 -176.38 REMARK 500 2 SER A 141 106.48 60.65 REMARK 500 3 SER A 3 178.79 60.37 REMARK 500 3 SER A 5 -52.97 -172.43 REMARK 500 3 ASP A 11 -169.81 -77.45 REMARK 500 3 LYS A 45 -47.06 -138.97 REMARK 500 3 ASN A 58 -177.82 -59.98 REMARK 500 3 ASP A 60 43.16 -100.20 REMARK 500 3 ALA A 73 98.07 -171.50 REMARK 500 3 TYR A 75 37.70 -99.93 REMARK 500 3 ARG A 77 -67.23 -123.70 REMARK 500 3 PHE A 78 -43.32 -166.24 REMARK 500 3 ASP A 79 173.03 62.08 REMARK 500 3 LYS A 81 35.07 -98.49 REMARK 500 3 LYS A 86 142.90 63.19 REMARK 500 3 THR A 89 -51.14 -126.92 REMARK 500 3 LEU A 90 -54.83 -176.41 REMARK 500 4 SER A 2 164.92 60.36 REMARK 500 4 LYS A 45 -55.73 -136.34 REMARK 500 4 ASP A 60 33.23 -152.83 REMARK 500 4 ASP A 79 110.15 -163.57 REMARK 500 4 SER A 80 69.20 -108.62 REMARK 500 4 LYS A 83 95.09 60.08 REMARK 500 4 LYS A 86 164.93 58.26 REMARK 500 4 HIS A 87 -48.51 -165.33 REMARK 500 4 THR A 89 -48.91 -145.34 REMARK 500 REMARK 500 THIS ENTRY HAS 266 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HSO003008195.1 RELATED DB: TARGETDB DBREF 2YUF A 8 136 UNP Q13506 NAB1_HUMAN 189 317 SEQADV 2YUF GLY A 1 UNP Q13506 EXPRESSION TAG SEQADV 2YUF SER A 2 UNP Q13506 EXPRESSION TAG SEQADV 2YUF SER A 3 UNP Q13506 EXPRESSION TAG SEQADV 2YUF GLY A 4 UNP Q13506 EXPRESSION TAG SEQADV 2YUF SER A 5 UNP Q13506 EXPRESSION TAG SEQADV 2YUF SER A 6 UNP Q13506 EXPRESSION TAG SEQADV 2YUF GLY A 7 UNP Q13506 EXPRESSION TAG SEQADV 2YUF SER A 137 UNP Q13506 EXPRESSION TAG SEQADV 2YUF GLY A 138 UNP Q13506 EXPRESSION TAG SEQADV 2YUF PRO A 139 UNP Q13506 EXPRESSION TAG SEQADV 2YUF SER A 140 UNP Q13506 EXPRESSION TAG SEQADV 2YUF SER A 141 UNP Q13506 EXPRESSION TAG SEQADV 2YUF GLY A 142 UNP Q13506 EXPRESSION TAG SEQRES 1 A 142 GLY SER SER GLY SER SER GLY GLU ALA LEU ASP ALA ALA SEQRES 2 A 142 ALA ALA LEU SER VAL ALA GLU CYS VAL GLU ARG MET ALA SEQRES 3 A 142 PRO THR LEU PRO LYS SER ASP LEU ASN GLU VAL LYS GLU SEQRES 4 A 142 LEU LEU LYS THR ASN LYS LYS LEU ALA LYS MET ILE GLY SEQRES 5 A 142 HIS ILE PHE GLU MET ASN ASP ASP ASP PRO HIS LYS GLU SEQRES 6 A 142 GLU GLU ILE ARG LYS TYR SER ALA ILE TYR GLY ARG PHE SEQRES 7 A 142 ASP SER LYS ARG LYS ASP GLY LYS HIS LEU THR LEU HIS SEQRES 8 A 142 GLU LEU THR VAL ASN GLU ALA ALA ALA GLN LEU CYS VAL SEQRES 9 A 142 LYS ASP ASN ALA LEU LEU THR ARG ARG ASP GLU LEU PHE SEQRES 10 A 142 ALA LEU ALA ARG GLN ILE SER ARG GLU VAL THR TYR LYS SEQRES 11 A 142 TYR THR TYR ARG THR THR SER GLY PRO SER SER GLY HELIX 1 1 ASP A 11 LEU A 29 1 19 HELIX 2 2 ASP A 33 ASN A 44 1 12 HELIX 3 3 LYS A 45 GLY A 52 1 8 HELIX 4 4 GLY A 52 MET A 57 1 6 HELIX 5 5 ASP A 61 SER A 72 1 12 HELIX 6 6 LEU A 90 ASP A 106 1 17 HELIX 7 7 ASN A 107 THR A 111 5 5 HELIX 8 8 ARG A 112 LYS A 130 1 19 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1