data_2YV0 # _entry.id 2YV0 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.380 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2YV0 pdb_00002yv0 10.2210/pdb2yv0/pdb RCSB RCSB027168 ? ? WWPDB D_1000027168 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2YV0 _pdbx_database_status.recvd_initial_deposition_date 2007-04-06 _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Haruki, M.' 1 'Motegi, T.' 2 'Tadokoro, T.' 3 'Koga, Y.' 4 'Takano, K.' 5 'Kanaya, S.' 6 # _citation.id primary _citation.title 'Structural and thermodynamic analyses of Escherichia coli RNase HI variant with quintuple thermostabilizing mutations.' _citation.journal_abbrev 'Febs J.' _citation.journal_volume 274 _citation.page_first 5815 _citation.page_last 5825 _citation.year 2007 _citation.journal_id_ASTM ? _citation.country UK _citation.journal_id_ISSN 1742-464X _citation.journal_id_CSD ? _citation.book_publisher ? _citation.pdbx_database_id_PubMed 17944939 _citation.pdbx_database_id_DOI 10.1111/j.1742-4658.2007.06104.x # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Haruki, M.' 1 ? primary 'Tanaka, M.' 2 ? primary 'Motegi, T.' 3 ? primary 'Tadokoro, T.' 4 ? primary 'Koga, Y.' 5 ? primary 'Takano, K.' 6 ? primary 'Kanaya, S.' 7 ? # _cell.entry_id 2YV0 _cell.length_a 43.371 _cell.length_b 86.483 _cell.length_c 34.816 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 2YV0 _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Ribonuclease HI' 17560.949 1 3.1.26.4 'G23A, H62P, V74L, K95G, D134H' ? ? 2 water nat water 18.015 217 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'RNase HI, Ribonuclease H, RNase H' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MLKQVEIFTDGSCLGNPGPGGYAAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALKEPCEVILSTDSQYLRQGITQ WIHNWKKRGWKTADGKPVKNVDLWQRLDAALGQHQIKWEWVKGHAGHPENERCHELARAAAMNPTLEDTGYQVEV ; _entity_poly.pdbx_seq_one_letter_code_can ;MLKQVEIFTDGSCLGNPGPGGYAAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALKEPCEVILSTDSQYLRQGITQ WIHNWKKRGWKTADGKPVKNVDLWQRLDAALGQHQIKWEWVKGHAGHPENERCHELARAAAMNPTLEDTGYQVEV ; _entity_poly.pdbx_strand_id X _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 LEU n 1 3 LYS n 1 4 GLN n 1 5 VAL n 1 6 GLU n 1 7 ILE n 1 8 PHE n 1 9 THR n 1 10 ASP n 1 11 GLY n 1 12 SER n 1 13 CYS n 1 14 LEU n 1 15 GLY n 1 16 ASN n 1 17 PRO n 1 18 GLY n 1 19 PRO n 1 20 GLY n 1 21 GLY n 1 22 TYR n 1 23 ALA n 1 24 ALA n 1 25 ILE n 1 26 LEU n 1 27 ARG n 1 28 TYR n 1 29 ARG n 1 30 GLY n 1 31 ARG n 1 32 GLU n 1 33 LYS n 1 34 THR n 1 35 PHE n 1 36 SER n 1 37 ALA n 1 38 GLY n 1 39 TYR n 1 40 THR n 1 41 ARG n 1 42 THR n 1 43 THR n 1 44 ASN n 1 45 ASN n 1 46 ARG n 1 47 MET n 1 48 GLU n 1 49 LEU n 1 50 MET n 1 51 ALA n 1 52 ALA n 1 53 ILE n 1 54 VAL n 1 55 ALA n 1 56 LEU n 1 57 GLU n 1 58 ALA n 1 59 LEU n 1 60 LYS n 1 61 GLU n 1 62 PRO n 1 63 CYS n 1 64 GLU n 1 65 VAL n 1 66 ILE n 1 67 LEU n 1 68 SER n 1 69 THR n 1 70 ASP n 1 71 SER n 1 72 GLN n 1 73 TYR n 1 74 LEU n 1 75 ARG n 1 76 GLN n 1 77 GLY n 1 78 ILE n 1 79 THR n 1 80 GLN n 1 81 TRP n 1 82 ILE n 1 83 HIS n 1 84 ASN n 1 85 TRP n 1 86 LYS n 1 87 LYS n 1 88 ARG n 1 89 GLY n 1 90 TRP n 1 91 LYS n 1 92 THR n 1 93 ALA n 1 94 ASP n 1 95 GLY n 1 96 LYS n 1 97 PRO n 1 98 VAL n 1 99 LYS n 1 100 ASN n 1 101 VAL n 1 102 ASP n 1 103 LEU n 1 104 TRP n 1 105 GLN n 1 106 ARG n 1 107 LEU n 1 108 ASP n 1 109 ALA n 1 110 ALA n 1 111 LEU n 1 112 GLY n 1 113 GLN n 1 114 HIS n 1 115 GLN n 1 116 ILE n 1 117 LYS n 1 118 TRP n 1 119 GLU n 1 120 TRP n 1 121 VAL n 1 122 LYS n 1 123 GLY n 1 124 HIS n 1 125 ALA n 1 126 GLY n 1 127 HIS n 1 128 PRO n 1 129 GLU n 1 130 ASN n 1 131 GLU n 1 132 ARG n 1 133 CYS n 1 134 HIS n 1 135 GLU n 1 136 LEU n 1 137 ALA n 1 138 ARG n 1 139 ALA n 1 140 ALA n 1 141 ALA n 1 142 MET n 1 143 ASN n 1 144 PRO n 1 145 THR n 1 146 LEU n 1 147 GLU n 1 148 ASP n 1 149 THR n 1 150 GLY n 1 151 TYR n 1 152 GLN n 1 153 VAL n 1 154 GLU n 1 155 VAL n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Escherichia _entity_src_gen.pdbx_gene_src_gene rnhA _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 562 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain HB101 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pJLA503 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code RNH_ECOLI _struct_ref.pdbx_db_accession P0A7Y4 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MLKQVEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALKEHCEVILSTDSQYVRQGITQ WIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEWVKGHAGHPENERCDELARAAAMNPTLEDTGYQVEV ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2YV0 _struct_ref_seq.pdbx_strand_id X _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 155 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P0A7Y4 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 155 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 155 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2YV0 ALA X 23 ? UNP P0A7Y4 GLY 23 'engineered mutation' 23 1 1 2YV0 PRO X 62 ? UNP P0A7Y4 HIS 62 'engineered mutation' 62 2 1 2YV0 LEU X 74 ? UNP P0A7Y4 VAL 74 'engineered mutation' 74 3 1 2YV0 GLY X 95 ? UNP P0A7Y4 LYS 95 'engineered mutation' 95 4 1 2YV0 HIS X 134 ? UNP P0A7Y4 ASP 134 'engineered mutation' 134 5 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 2YV0 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number ? # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 1.86 _exptl_crystal.density_percent_sol 33.82 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pdbx_details 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp ? _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector ? _diffrn_detector.type ? _diffrn_detector.pdbx_collection_date 2006-03-09 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.80 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'SPRING-8 BEAMLINE BL38B1' _diffrn_source.pdbx_synchrotron_site SPring-8 _diffrn_source.pdbx_synchrotron_beamline BL38B1 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.80 # _reflns.entry_id 2YV0 _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.d_resolution_high 1.32 _reflns.d_resolution_low 50.0 _reflns.number_all ? _reflns.number_obs 31520 _reflns.percent_possible_obs 99.8 _reflns.pdbx_Rmerge_I_obs 0.032 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 62.0 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 1.32 _reflns_shell.d_res_low 1.37 _reflns_shell.percent_possible_all 99.9 _reflns_shell.Rmerge_I_obs 0.134 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 12.1 _reflns_shell.pdbx_redundancy ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 2YV0 _refine.ls_number_reflns_obs 26471 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 25.91 _refine.ls_d_res_high 1.40 _refine.ls_percent_reflns_obs 100.00 _refine.ls_R_factor_obs 0.18243 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.18243 _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.956 _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 11.709 _refine.aniso_B[1][1] 0.00 _refine.aniso_B[2][2] 0.00 _refine.aniso_B[3][3] -0.01 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'BABINET MODEL WITH MASK' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.40 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method ? _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model 2RN2 _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R 0.068 _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.049 _refine.overall_SU_B 1.183 _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1234 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 217 _refine_hist.number_atoms_total 1451 _refine_hist.d_res_high 1.40 _refine_hist.d_res_low 25.91 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.025 0.021 ? 1263 'X-RAY DIFFRACTION' ? r_bond_other_d 0.001 0.020 ? 1124 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.876 1.927 ? 1709 'X-RAY DIFFRACTION' ? r_angle_other_deg 1.079 3.000 ? 2615 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 6.138 3.000 ? 154 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 16.114 15.000 ? 226 'X-RAY DIFFRACTION' ? r_chiral_restr 0.492 0.200 ? 179 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.008 0.020 ? 1414 'X-RAY DIFFRACTION' ? r_gen_planes_other 0.003 0.020 ? 258 'X-RAY DIFFRACTION' ? r_nbd_refined 0.254 0.300 ? 288 'X-RAY DIFFRACTION' ? r_nbd_other 0.208 0.300 ? 1108 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 0.282 0.500 ? 163 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other 0.063 0.500 ? 3 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 0.440 0.300 ? 24 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other 0.260 0.300 ? 52 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 0.435 0.500 ? 41 'X-RAY DIFFRACTION' ? r_mcbond_it 0.947 1.500 ? 767 'X-RAY DIFFRACTION' ? r_mcangle_it 1.669 2.000 ? 1224 'X-RAY DIFFRACTION' ? r_scbond_it 2.615 3.000 ? 496 'X-RAY DIFFRACTION' ? r_scangle_it 4.260 4.500 ? 485 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.400 _refine_ls_shell.d_res_low 1.436 _refine_ls_shell.number_reflns_R_work 1914 _refine_ls_shell.R_factor_R_work 0.191 _refine_ls_shell.percent_reflns_obs ? _refine_ls_shell.R_factor_R_free ? _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free ? _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 2YV0 _struct.title 'Structural and Thermodynamic Analyses of E. coli ribonuclease HI Variant with Quintuple Thermostabilizing Mutations' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2YV0 _struct_keywords.pdbx_keywords HYDROLASE _struct_keywords.text 'RNase HI, Quintuple Thermostabilizing Mutations, E. coli, HYDROLASE' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 THR A 43 ? ALA A 58 ? THR X 43 ALA X 58 1 ? 16 HELX_P HELX_P2 2 SER A 71 ? TRP A 81 ? SER X 71 TRP X 81 1 ? 11 HELX_P HELX_P3 3 TRP A 81 ? ARG A 88 ? TRP X 81 ARG X 88 1 ? 8 HELX_P HELX_P4 4 ASN A 100 ? GLY A 112 ? ASN X 100 GLY X 112 1 ? 13 HELX_P HELX_P5 5 HIS A 127 ? ASN A 143 ? HIS X 127 ASN X 143 1 ? 17 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id ASN _struct_mon_prot_cis.label_seq_id 16 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id ASN _struct_mon_prot_cis.auth_seq_id 16 _struct_mon_prot_cis.auth_asym_id X _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 17 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 17 _struct_mon_prot_cis.pdbx_auth_asym_id_2 X _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle 2.04 # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 5 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? parallel A 4 5 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ARG A 31 ? THR A 42 ? ARG X 31 THR X 42 A 2 GLY A 18 ? TYR A 28 ? GLY X 18 TYR X 28 A 3 VAL A 5 ? CYS A 13 ? VAL X 5 CYS X 13 A 4 GLU A 64 ? THR A 69 ? GLU X 64 THR X 69 A 5 GLN A 115 ? TRP A 120 ? GLN X 115 TRP X 120 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O TYR A 39 ? O TYR X 39 N GLY A 20 ? N GLY X 20 A 2 3 O GLY A 21 ? O GLY X 21 N SER A 12 ? N SER X 12 A 3 4 N VAL A 5 ? N VAL X 5 O GLU A 64 ? O GLU X 64 A 4 5 N LEU A 67 ? N LEU X 67 O GLU A 119 ? O GLU X 119 # _database_PDB_matrix.entry_id 2YV0 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2YV0 _atom_sites.fract_transf_matrix[1][1] 0.023057 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.011563 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.028722 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _database_PDB_caveat.text 'THERE ARE SEVERAL CHIRALITY ERRORS IN CHAIN X.' # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 1 1 MET MET X . n A 1 2 LEU 2 2 2 LEU LEU X . n A 1 3 LYS 3 3 3 LYS LYS X . n A 1 4 GLN 4 4 4 GLN GLN X . n A 1 5 VAL 5 5 5 VAL VAL X . n A 1 6 GLU 6 6 6 GLU GLU X . n A 1 7 ILE 7 7 7 ILE ILE X . n A 1 8 PHE 8 8 8 PHE PHE X . n A 1 9 THR 9 9 9 THR THR X . n A 1 10 ASP 10 10 10 ASP ASP X . n A 1 11 GLY 11 11 11 GLY GLY X . n A 1 12 SER 12 12 12 SER SER X . n A 1 13 CYS 13 13 13 CYS CYS X . n A 1 14 LEU 14 14 14 LEU LEU X . n A 1 15 GLY 15 15 15 GLY GLY X . n A 1 16 ASN 16 16 16 ASN ASN X . n A 1 17 PRO 17 17 17 PRO PRO X . n A 1 18 GLY 18 18 18 GLY GLY X . n A 1 19 PRO 19 19 19 PRO PRO X . n A 1 20 GLY 20 20 20 GLY GLY X . n A 1 21 GLY 21 21 21 GLY GLY X . n A 1 22 TYR 22 22 22 TYR TYR X . n A 1 23 ALA 23 23 23 ALA ALA X . n A 1 24 ALA 24 24 24 ALA ALA X . n A 1 25 ILE 25 25 25 ILE ILE X . n A 1 26 LEU 26 26 26 LEU LEU X . n A 1 27 ARG 27 27 27 ARG ARG X . n A 1 28 TYR 28 28 28 TYR TYR X . n A 1 29 ARG 29 29 29 ARG ARG X . n A 1 30 GLY 30 30 30 GLY GLY X . n A 1 31 ARG 31 31 31 ARG ARG X . n A 1 32 GLU 32 32 32 GLU GLU X . n A 1 33 LYS 33 33 33 LYS LYS X . n A 1 34 THR 34 34 34 THR THR X . n A 1 35 PHE 35 35 35 PHE PHE X . n A 1 36 SER 36 36 36 SER SER X . n A 1 37 ALA 37 37 37 ALA ALA X . n A 1 38 GLY 38 38 38 GLY GLY X . n A 1 39 TYR 39 39 39 TYR TYR X . n A 1 40 THR 40 40 40 THR THR X . n A 1 41 ARG 41 41 41 ARG ARG X . n A 1 42 THR 42 42 42 THR THR X . n A 1 43 THR 43 43 43 THR THR X . n A 1 44 ASN 44 44 44 ASN ASN X . n A 1 45 ASN 45 45 45 ASN ASN X . n A 1 46 ARG 46 46 46 ARG ARG X . n A 1 47 MET 47 47 47 MET MET X . n A 1 48 GLU 48 48 48 GLU GLU X . n A 1 49 LEU 49 49 49 LEU LEU X . n A 1 50 MET 50 50 50 MET MET X . n A 1 51 ALA 51 51 51 ALA ALA X . n A 1 52 ALA 52 52 52 ALA ALA X . n A 1 53 ILE 53 53 53 ILE ILE X . n A 1 54 VAL 54 54 54 VAL VAL X . n A 1 55 ALA 55 55 55 ALA ALA X . n A 1 56 LEU 56 56 56 LEU LEU X . n A 1 57 GLU 57 57 57 GLU GLU X . n A 1 58 ALA 58 58 58 ALA ALA X . n A 1 59 LEU 59 59 59 LEU LEU X . n A 1 60 LYS 60 60 60 LYS LYS X . n A 1 61 GLU 61 61 61 GLU GLU X . n A 1 62 PRO 62 62 62 PRO PRO X . n A 1 63 CYS 63 63 63 CYS CYS X . n A 1 64 GLU 64 64 64 GLU GLU X . n A 1 65 VAL 65 65 65 VAL VAL X . n A 1 66 ILE 66 66 66 ILE ILE X . n A 1 67 LEU 67 67 67 LEU LEU X . n A 1 68 SER 68 68 68 SER SER X . n A 1 69 THR 69 69 69 THR THR X . n A 1 70 ASP 70 70 70 ASP ASP X . n A 1 71 SER 71 71 71 SER SER X . n A 1 72 GLN 72 72 72 GLN GLN X . n A 1 73 TYR 73 73 73 TYR TYR X . n A 1 74 LEU 74 74 74 LEU LEU X . n A 1 75 ARG 75 75 75 ARG ARG X . n A 1 76 GLN 76 76 76 GLN GLN X . n A 1 77 GLY 77 77 77 GLY GLY X . n A 1 78 ILE 78 78 78 ILE ILE X . n A 1 79 THR 79 79 79 THR THR X . n A 1 80 GLN 80 80 80 GLN GLN X . n A 1 81 TRP 81 81 81 TRP TRP X . n A 1 82 ILE 82 82 82 ILE ILE X . n A 1 83 HIS 83 83 83 HIS HIS X . n A 1 84 ASN 84 84 84 ASN ASN X . n A 1 85 TRP 85 85 85 TRP TRP X . n A 1 86 LYS 86 86 86 LYS LYS X . n A 1 87 LYS 87 87 87 LYS LYS X . n A 1 88 ARG 88 88 88 ARG ARG X . n A 1 89 GLY 89 89 89 GLY GLY X . n A 1 90 TRP 90 90 90 TRP TRP X . n A 1 91 LYS 91 91 91 LYS LYS X . n A 1 92 THR 92 92 92 THR THR X . n A 1 93 ALA 93 93 93 ALA ALA X . n A 1 94 ASP 94 94 94 ASP ASP X . n A 1 95 GLY 95 95 95 GLY GLY X . n A 1 96 LYS 96 96 96 LYS LYS X . n A 1 97 PRO 97 97 97 PRO PRO X . n A 1 98 VAL 98 98 98 VAL VAL X . n A 1 99 LYS 99 99 99 LYS LYS X . n A 1 100 ASN 100 100 100 ASN ASN X . n A 1 101 VAL 101 101 101 VAL VAL X . n A 1 102 ASP 102 102 102 ASP ASP X . n A 1 103 LEU 103 103 103 LEU LEU X . n A 1 104 TRP 104 104 104 TRP TRP X . n A 1 105 GLN 105 105 105 GLN GLN X . n A 1 106 ARG 106 106 106 ARG ARG X . n A 1 107 LEU 107 107 107 LEU LEU X . n A 1 108 ASP 108 108 108 ASP ASP X . n A 1 109 ALA 109 109 109 ALA ALA X . n A 1 110 ALA 110 110 110 ALA ALA X . n A 1 111 LEU 111 111 111 LEU LEU X . n A 1 112 GLY 112 112 112 GLY GLY X . n A 1 113 GLN 113 113 113 GLN GLN X . n A 1 114 HIS 114 114 114 HIS HIS X . n A 1 115 GLN 115 115 115 GLN GLN X . n A 1 116 ILE 116 116 116 ILE ILE X . n A 1 117 LYS 117 117 117 LYS LYS X . n A 1 118 TRP 118 118 118 TRP TRP X . n A 1 119 GLU 119 119 119 GLU GLU X . n A 1 120 TRP 120 120 120 TRP TRP X . n A 1 121 VAL 121 121 121 VAL VAL X . n A 1 122 LYS 122 122 122 LYS LYS X . n A 1 123 GLY 123 123 123 GLY GLY X . n A 1 124 HIS 124 124 124 HIS HIS X . n A 1 125 ALA 125 125 125 ALA ALA X . n A 1 126 GLY 126 126 126 GLY GLY X . n A 1 127 HIS 127 127 127 HIS HIS X . n A 1 128 PRO 128 128 128 PRO PRO X . n A 1 129 GLU 129 129 129 GLU GLU X . n A 1 130 ASN 130 130 130 ASN ASN X . n A 1 131 GLU 131 131 131 GLU GLU X . n A 1 132 ARG 132 132 132 ARG ARG X . n A 1 133 CYS 133 133 133 CYS CYS X . n A 1 134 HIS 134 134 134 HIS HIS X . n A 1 135 GLU 135 135 135 GLU GLU X . n A 1 136 LEU 136 136 136 LEU LEU X . n A 1 137 ALA 137 137 137 ALA ALA X . n A 1 138 ARG 138 138 138 ARG ARG X . n A 1 139 ALA 139 139 139 ALA ALA X . n A 1 140 ALA 140 140 140 ALA ALA X . n A 1 141 ALA 141 141 141 ALA ALA X . n A 1 142 MET 142 142 142 MET MET X . n A 1 143 ASN 143 143 143 ASN ASN X . n A 1 144 PRO 144 144 144 PRO PRO X . n A 1 145 THR 145 145 145 THR THR X . n A 1 146 LEU 146 146 146 LEU LEU X . n A 1 147 GLU 147 147 147 GLU GLU X . n A 1 148 ASP 148 148 148 ASP ASP X . n A 1 149 THR 149 149 149 THR THR X . n A 1 150 GLY 150 150 150 GLY GLY X . n A 1 151 TYR 151 151 151 TYR TYR X . n A 1 152 GLN 152 152 152 GLN GLN X . n A 1 153 VAL 153 153 153 VAL VAL X . n A 1 154 GLU 154 154 154 GLU GLU X . n A 1 155 VAL 155 155 155 VAL VAL X . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HOH 1 156 154 HOH HOH X . B 2 HOH 2 157 155 HOH HOH X . B 2 HOH 3 158 156 HOH HOH X . B 2 HOH 4 159 157 HOH HOH X . B 2 HOH 5 160 158 HOH HOH X . B 2 HOH 6 161 159 HOH HOH X . B 2 HOH 7 162 160 HOH HOH X . B 2 HOH 8 163 161 HOH HOH X . B 2 HOH 9 164 162 HOH HOH X . B 2 HOH 10 165 163 HOH HOH X . B 2 HOH 11 166 164 HOH HOH X . B 2 HOH 12 167 165 HOH HOH X . B 2 HOH 13 168 167 HOH HOH X . B 2 HOH 14 169 168 HOH HOH X . B 2 HOH 15 170 169 HOH HOH X . B 2 HOH 16 171 170 HOH HOH X . B 2 HOH 17 172 171 HOH HOH X . B 2 HOH 18 173 172 HOH HOH X . B 2 HOH 19 174 173 HOH HOH X . B 2 HOH 20 175 174 HOH HOH X . B 2 HOH 21 176 175 HOH HOH X . B 2 HOH 22 177 177 HOH HOH X . B 2 HOH 23 178 178 HOH HOH X . B 2 HOH 24 179 179 HOH HOH X . B 2 HOH 25 180 180 HOH HOH X . B 2 HOH 26 181 181 HOH HOH X . B 2 HOH 27 182 182 HOH HOH X . B 2 HOH 28 183 183 HOH HOH X . B 2 HOH 29 184 184 HOH HOH X . B 2 HOH 30 185 185 HOH HOH X . B 2 HOH 31 186 186 HOH HOH X . B 2 HOH 32 187 187 HOH HOH X . B 2 HOH 33 188 188 HOH HOH X . B 2 HOH 34 189 189 HOH HOH X . B 2 HOH 35 190 190 HOH HOH X . B 2 HOH 36 191 191 HOH HOH X . B 2 HOH 37 192 192 HOH HOH X . B 2 HOH 38 193 193 HOH HOH X . B 2 HOH 39 194 194 HOH HOH X . B 2 HOH 40 195 195 HOH HOH X . B 2 HOH 41 196 196 HOH HOH X . B 2 HOH 42 197 197 HOH HOH X . B 2 HOH 43 198 198 HOH HOH X . B 2 HOH 44 199 199 HOH HOH X . B 2 HOH 45 200 200 HOH HOH X . B 2 HOH 46 201 201 HOH HOH X . B 2 HOH 47 202 202 HOH HOH X . B 2 HOH 48 203 203 HOH HOH X . B 2 HOH 49 204 204 HOH HOH X . B 2 HOH 50 205 205 HOH HOH X . B 2 HOH 51 206 206 HOH HOH X . B 2 HOH 52 207 207 HOH HOH X . B 2 HOH 53 208 208 HOH HOH X . B 2 HOH 54 209 209 HOH HOH X . B 2 HOH 55 210 210 HOH HOH X . B 2 HOH 56 211 211 HOH HOH X . B 2 HOH 57 212 212 HOH HOH X . B 2 HOH 58 213 213 HOH HOH X . B 2 HOH 59 214 214 HOH HOH X . B 2 HOH 60 215 216 HOH HOH X . B 2 HOH 61 216 217 HOH HOH X . B 2 HOH 62 217 218 HOH HOH X . B 2 HOH 63 218 219 HOH HOH X . B 2 HOH 64 219 220 HOH HOH X . B 2 HOH 65 220 221 HOH HOH X . B 2 HOH 66 221 222 HOH HOH X . B 2 HOH 67 222 223 HOH HOH X . B 2 HOH 68 223 224 HOH HOH X . B 2 HOH 69 224 225 HOH HOH X . B 2 HOH 70 225 226 HOH HOH X . B 2 HOH 71 226 227 HOH HOH X . B 2 HOH 72 227 228 HOH HOH X . B 2 HOH 73 228 229 HOH HOH X . B 2 HOH 74 229 230 HOH HOH X . B 2 HOH 75 230 231 HOH HOH X . B 2 HOH 76 231 232 HOH HOH X . B 2 HOH 77 232 233 HOH HOH X . B 2 HOH 78 233 234 HOH HOH X . B 2 HOH 79 234 235 HOH HOH X . B 2 HOH 80 235 236 HOH HOH X . B 2 HOH 81 236 237 HOH HOH X . B 2 HOH 82 237 238 HOH HOH X . B 2 HOH 83 238 239 HOH HOH X . B 2 HOH 84 239 240 HOH HOH X . B 2 HOH 85 240 241 HOH HOH X . B 2 HOH 86 241 242 HOH HOH X . B 2 HOH 87 242 243 HOH HOH X . B 2 HOH 88 243 244 HOH HOH X . B 2 HOH 89 244 245 HOH HOH X . B 2 HOH 90 245 246 HOH HOH X . B 2 HOH 91 246 247 HOH HOH X . B 2 HOH 92 247 248 HOH HOH X . B 2 HOH 93 248 249 HOH HOH X . B 2 HOH 94 249 250 HOH HOH X . B 2 HOH 95 250 251 HOH HOH X . B 2 HOH 96 251 252 HOH HOH X . B 2 HOH 97 252 253 HOH HOH X . B 2 HOH 98 253 254 HOH HOH X . B 2 HOH 99 254 255 HOH HOH X . B 2 HOH 100 255 256 HOH HOH X . B 2 HOH 101 256 258 HOH HOH X . B 2 HOH 102 257 259 HOH HOH X . B 2 HOH 103 258 260 HOH HOH X . B 2 HOH 104 259 261 HOH HOH X . B 2 HOH 105 260 262 HOH HOH X . B 2 HOH 106 261 263 HOH HOH X . B 2 HOH 107 262 264 HOH HOH X . B 2 HOH 108 263 265 HOH HOH X . B 2 HOH 109 264 266 HOH HOH X . B 2 HOH 110 265 267 HOH HOH X . B 2 HOH 111 266 268 HOH HOH X . B 2 HOH 112 267 269 HOH HOH X . B 2 HOH 113 268 270 HOH HOH X . B 2 HOH 114 269 271 HOH HOH X . B 2 HOH 115 270 273 HOH HOH X . B 2 HOH 116 271 274 HOH HOH X . B 2 HOH 117 272 276 HOH HOH X . B 2 HOH 118 273 277 HOH HOH X . B 2 HOH 119 274 278 HOH HOH X . B 2 HOH 120 275 279 HOH HOH X . B 2 HOH 121 276 280 HOH HOH X . B 2 HOH 122 277 281 HOH HOH X . B 2 HOH 123 278 282 HOH HOH X . B 2 HOH 124 279 283 HOH HOH X . B 2 HOH 125 280 284 HOH HOH X . B 2 HOH 126 281 285 HOH HOH X . B 2 HOH 127 282 286 HOH HOH X . B 2 HOH 128 283 287 HOH HOH X . B 2 HOH 129 284 293 HOH HOH X . B 2 HOH 130 285 294 HOH HOH X . B 2 HOH 131 286 297 HOH HOH X . B 2 HOH 132 287 299 HOH HOH X . B 2 HOH 133 288 307 HOH HOH X . B 2 HOH 134 289 308 HOH HOH X . B 2 HOH 135 290 311 HOH HOH X . B 2 HOH 136 291 312 HOH HOH X . B 2 HOH 137 292 316 HOH HOH X . B 2 HOH 138 293 317 HOH HOH X . B 2 HOH 139 294 319 HOH HOH X . B 2 HOH 140 295 321 HOH HOH X . B 2 HOH 141 296 322 HOH HOH X . B 2 HOH 142 297 323 HOH HOH X . B 2 HOH 143 298 325 HOH HOH X . B 2 HOH 144 299 328 HOH HOH X . B 2 HOH 145 300 329 HOH HOH X . B 2 HOH 146 301 330 HOH HOH X . B 2 HOH 147 302 331 HOH HOH X . B 2 HOH 148 303 332 HOH HOH X . B 2 HOH 149 304 333 HOH HOH X . B 2 HOH 150 305 334 HOH HOH X . B 2 HOH 151 306 335 HOH HOH X . B 2 HOH 152 307 336 HOH HOH X . B 2 HOH 153 308 337 HOH HOH X . B 2 HOH 154 309 338 HOH HOH X . B 2 HOH 155 310 339 HOH HOH X . B 2 HOH 156 311 340 HOH HOH X . B 2 HOH 157 312 341 HOH HOH X . B 2 HOH 158 313 344 HOH HOH X . B 2 HOH 159 314 345 HOH HOH X . B 2 HOH 160 315 346 HOH HOH X . B 2 HOH 161 316 347 HOH HOH X . B 2 HOH 162 317 348 HOH HOH X . B 2 HOH 163 318 349 HOH HOH X . B 2 HOH 164 319 350 HOH HOH X . B 2 HOH 165 320 351 HOH HOH X . B 2 HOH 166 321 352 HOH HOH X . B 2 HOH 167 322 353 HOH HOH X . B 2 HOH 168 323 354 HOH HOH X . B 2 HOH 169 324 356 HOH HOH X . B 2 HOH 170 325 357 HOH HOH X . B 2 HOH 171 326 358 HOH HOH X . B 2 HOH 172 327 359 HOH HOH X . B 2 HOH 173 328 362 HOH HOH X . B 2 HOH 174 329 363 HOH HOH X . B 2 HOH 175 330 364 HOH HOH X . B 2 HOH 176 331 366 HOH HOH X . B 2 HOH 177 332 370 HOH HOH X . B 2 HOH 178 333 372 HOH HOH X . B 2 HOH 179 334 375 HOH HOH X . B 2 HOH 180 335 376 HOH HOH X . B 2 HOH 181 336 378 HOH HOH X . B 2 HOH 182 337 379 HOH HOH X . B 2 HOH 183 338 381 HOH HOH X . B 2 HOH 184 339 384 HOH HOH X . B 2 HOH 185 340 385 HOH HOH X . B 2 HOH 186 341 386 HOH HOH X . B 2 HOH 187 342 387 HOH HOH X . B 2 HOH 188 343 388 HOH HOH X . B 2 HOH 189 344 389 HOH HOH X . B 2 HOH 190 345 390 HOH HOH X . B 2 HOH 191 346 391 HOH HOH X . B 2 HOH 192 347 393 HOH HOH X . B 2 HOH 193 348 394 HOH HOH X . B 2 HOH 194 349 395 HOH HOH X . B 2 HOH 195 350 397 HOH HOH X . B 2 HOH 196 351 398 HOH HOH X . B 2 HOH 197 352 399 HOH HOH X . B 2 HOH 198 353 400 HOH HOH X . B 2 HOH 199 354 401 HOH HOH X . B 2 HOH 200 355 402 HOH HOH X . B 2 HOH 201 356 403 HOH HOH X . B 2 HOH 202 357 404 HOH HOH X . B 2 HOH 203 358 405 HOH HOH X . B 2 HOH 204 359 406 HOH HOH X . B 2 HOH 205 360 407 HOH HOH X . B 2 HOH 206 361 408 HOH HOH X . B 2 HOH 207 362 410 HOH HOH X . B 2 HOH 208 363 411 HOH HOH X . B 2 HOH 209 364 413 HOH HOH X . B 2 HOH 210 365 414 HOH HOH X . B 2 HOH 211 366 415 HOH HOH X . B 2 HOH 212 367 417 HOH HOH X . B 2 HOH 213 368 418 HOH HOH X . B 2 HOH 214 369 419 HOH HOH X . B 2 HOH 215 370 420 HOH HOH X . B 2 HOH 216 371 421 HOH HOH X . B 2 HOH 217 372 422 HOH HOH X . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2008-03-18 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2021-11-10 4 'Structure model' 1 3 2023-10-25 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Database references' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' database_2 2 3 'Structure model' struct_ref_seq_dif 3 4 'Structure model' chem_comp_atom 4 4 'Structure model' chem_comp_bond 5 4 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_struct_ref_seq_dif.details' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal REFMAC refinement 5.0 ? 1 HKL-2000 'data collection' . ? 2 HKL-2000 'data reduction' . ? 3 HKL-2000 'data scaling' . ? 4 MOLREP phasing . ? 5 # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 O X ASP 70 ? ? O X HOH 309 ? ? 1.65 2 1 O X HOH 231 ? ? O X HOH 312 ? ? 1.77 3 1 ND2 X ASN 84 ? ? O X HOH 314 ? ? 1.82 4 1 O X HOH 228 ? ? O X HOH 297 ? ? 1.88 5 1 O X HOH 236 ? ? O X HOH 298 ? ? 1.94 6 1 O X HOH 158 ? ? O X HOH 296 ? ? 2.02 7 1 OE1 X GLN 72 ? ? O X HOH 228 ? ? 2.03 8 1 O X HOH 365 ? ? O X HOH 366 ? ? 2.09 9 1 OE1 X GLN 152 ? ? O X HOH 336 ? ? 2.12 10 1 O X HOH 261 ? ? O X HOH 281 ? ? 2.13 11 1 O X HOH 295 ? ? O X HOH 297 ? ? 2.14 12 1 O X HOH 290 ? ? O X HOH 330 ? ? 2.15 13 1 O X GLY 126 ? ? O X HOH 200 ? ? 2.17 14 1 O X LEU 14 ? ? O X HOH 321 ? ? 2.18 15 1 O X HOH 322 ? ? O X HOH 368 ? ? 2.19 16 1 NE2 X GLN 4 ? ? O X HOH 270 ? ? 2.19 # loop_ _pdbx_validate_symm_contact.id _pdbx_validate_symm_contact.PDB_model_num _pdbx_validate_symm_contact.auth_atom_id_1 _pdbx_validate_symm_contact.auth_asym_id_1 _pdbx_validate_symm_contact.auth_comp_id_1 _pdbx_validate_symm_contact.auth_seq_id_1 _pdbx_validate_symm_contact.PDB_ins_code_1 _pdbx_validate_symm_contact.label_alt_id_1 _pdbx_validate_symm_contact.site_symmetry_1 _pdbx_validate_symm_contact.auth_atom_id_2 _pdbx_validate_symm_contact.auth_asym_id_2 _pdbx_validate_symm_contact.auth_comp_id_2 _pdbx_validate_symm_contact.auth_seq_id_2 _pdbx_validate_symm_contact.PDB_ins_code_2 _pdbx_validate_symm_contact.label_alt_id_2 _pdbx_validate_symm_contact.site_symmetry_2 _pdbx_validate_symm_contact.dist 1 1 O X VAL 155 ? ? 1_555 O X HOH 203 ? ? 4_456 0.84 2 1 NZ X LYS 122 ? ? 1_555 O X HOH 337 ? ? 1_556 1.81 3 1 O X HOH 176 ? ? 1_555 O X HOH 347 ? ? 3_545 1.94 4 1 C X VAL 155 ? ? 1_555 O X HOH 203 ? ? 4_456 1.99 5 1 OE1 X GLU 135 ? ? 1_555 O X HOH 176 ? ? 3_555 2.08 6 1 O X HOH 284 ? ? 1_555 O X HOH 315 ? ? 4_456 2.10 7 1 O X HOH 311 ? ? 1_555 O X HOH 330 ? ? 4_555 2.15 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 SD X MET 1 ? ? CE X MET 1 ? ? 1.390 1.774 -0.384 0.056 N 2 1 SD X MET 50 ? ? CE X MET 50 ? ? 1.243 1.774 -0.531 0.056 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 CB X ASP 70 ? ? CG X ASP 70 ? ? OD2 X ASP 70 ? ? 124.16 118.30 5.86 0.90 N 2 1 CB X ASP 94 ? ? CG X ASP 94 ? ? OD2 X ASP 94 ? ? 124.21 118.30 5.91 0.90 N 3 1 N X VAL 153 ? ? CA X VAL 153 ? ? C X VAL 153 ? ? 127.50 111.00 16.50 2.70 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 LEU X 2 ? ? -38.34 135.59 2 1 CYS X 13 ? ? -167.78 119.76 # loop_ _pdbx_validate_chiral.id _pdbx_validate_chiral.PDB_model_num _pdbx_validate_chiral.auth_atom_id _pdbx_validate_chiral.label_alt_id _pdbx_validate_chiral.auth_asym_id _pdbx_validate_chiral.auth_comp_id _pdbx_validate_chiral.auth_seq_id _pdbx_validate_chiral.PDB_ins_code _pdbx_validate_chiral.details _pdbx_validate_chiral.omega 1 1 CB ? X THR 40 ? 'WRONG HAND' . 2 1 CA ? X GLU 154 ? 'WRONG HAND' . 3 1 CA ? X VAL 155 ? PLANAR . # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 GLN N N N N 88 GLN CA C N S 89 GLN C C N N 90 GLN O O N N 91 GLN CB C N N 92 GLN CG C N N 93 GLN CD C N N 94 GLN OE1 O N N 95 GLN NE2 N N N 96 GLN OXT O N N 97 GLN H H N N 98 GLN H2 H N N 99 GLN HA H N N 100 GLN HB2 H N N 101 GLN HB3 H N N 102 GLN HG2 H N N 103 GLN HG3 H N N 104 GLN HE21 H N N 105 GLN HE22 H N N 106 GLN HXT H N N 107 GLU N N N N 108 GLU CA C N S 109 GLU C C N N 110 GLU O O N N 111 GLU CB C N N 112 GLU CG C N N 113 GLU CD C N N 114 GLU OE1 O N N 115 GLU OE2 O N N 116 GLU OXT O N N 117 GLU H H N N 118 GLU H2 H N N 119 GLU HA H N N 120 GLU HB2 H N N 121 GLU HB3 H N N 122 GLU HG2 H N N 123 GLU HG3 H N N 124 GLU HE2 H N N 125 GLU HXT H N N 126 GLY N N N N 127 GLY CA C N N 128 GLY C C N N 129 GLY O O N N 130 GLY OXT O N N 131 GLY H H N N 132 GLY H2 H N N 133 GLY HA2 H N N 134 GLY HA3 H N N 135 GLY HXT H N N 136 HIS N N N N 137 HIS CA C N S 138 HIS C C N N 139 HIS O O N N 140 HIS CB C N N 141 HIS CG C Y N 142 HIS ND1 N Y N 143 HIS CD2 C Y N 144 HIS CE1 C Y N 145 HIS NE2 N Y N 146 HIS OXT O N N 147 HIS H H N N 148 HIS H2 H N N 149 HIS HA H N N 150 HIS HB2 H N N 151 HIS HB3 H N N 152 HIS HD1 H N N 153 HIS HD2 H N N 154 HIS HE1 H N N 155 HIS HE2 H N N 156 HIS HXT H N N 157 HOH O O N N 158 HOH H1 H N N 159 HOH H2 H N N 160 ILE N N N N 161 ILE CA C N S 162 ILE C C N N 163 ILE O O N N 164 ILE CB C N S 165 ILE CG1 C N N 166 ILE CG2 C N N 167 ILE CD1 C N N 168 ILE OXT O N N 169 ILE H H N N 170 ILE H2 H N N 171 ILE HA H N N 172 ILE HB H N N 173 ILE HG12 H N N 174 ILE HG13 H N N 175 ILE HG21 H N N 176 ILE HG22 H N N 177 ILE HG23 H N N 178 ILE HD11 H N N 179 ILE HD12 H N N 180 ILE HD13 H N N 181 ILE HXT H N N 182 LEU N N N N 183 LEU CA C N S 184 LEU C C N N 185 LEU O O N N 186 LEU CB C N N 187 LEU CG C N N 188 LEU CD1 C N N 189 LEU CD2 C N N 190 LEU OXT O N N 191 LEU H H N N 192 LEU H2 H N N 193 LEU HA H N N 194 LEU HB2 H N N 195 LEU HB3 H N N 196 LEU HG H N N 197 LEU HD11 H N N 198 LEU HD12 H N N 199 LEU HD13 H N N 200 LEU HD21 H N N 201 LEU HD22 H N N 202 LEU HD23 H N N 203 LEU HXT H N N 204 LYS N N N N 205 LYS CA C N S 206 LYS C C N N 207 LYS O O N N 208 LYS CB C N N 209 LYS CG C N N 210 LYS CD C N N 211 LYS CE C N N 212 LYS NZ N N N 213 LYS OXT O N N 214 LYS H H N N 215 LYS H2 H N N 216 LYS HA H N N 217 LYS HB2 H N N 218 LYS HB3 H N N 219 LYS HG2 H N N 220 LYS HG3 H N N 221 LYS HD2 H N N 222 LYS HD3 H N N 223 LYS HE2 H N N 224 LYS HE3 H N N 225 LYS HZ1 H N N 226 LYS HZ2 H N N 227 LYS HZ3 H N N 228 LYS HXT H N N 229 MET N N N N 230 MET CA C N S 231 MET C C N N 232 MET O O N N 233 MET CB C N N 234 MET CG C N N 235 MET SD S N N 236 MET CE C N N 237 MET OXT O N N 238 MET H H N N 239 MET H2 H N N 240 MET HA H N N 241 MET HB2 H N N 242 MET HB3 H N N 243 MET HG2 H N N 244 MET HG3 H N N 245 MET HE1 H N N 246 MET HE2 H N N 247 MET HE3 H N N 248 MET HXT H N N 249 PHE N N N N 250 PHE CA C N S 251 PHE C C N N 252 PHE O O N N 253 PHE CB C N N 254 PHE CG C Y N 255 PHE CD1 C Y N 256 PHE CD2 C Y N 257 PHE CE1 C Y N 258 PHE CE2 C Y N 259 PHE CZ C Y N 260 PHE OXT O N N 261 PHE H H N N 262 PHE H2 H N N 263 PHE HA H N N 264 PHE HB2 H N N 265 PHE HB3 H N N 266 PHE HD1 H N N 267 PHE HD2 H N N 268 PHE HE1 H N N 269 PHE HE2 H N N 270 PHE HZ H N N 271 PHE HXT H N N 272 PRO N N N N 273 PRO CA C N S 274 PRO C C N N 275 PRO O O N N 276 PRO CB C N N 277 PRO CG C N N 278 PRO CD C N N 279 PRO OXT O N N 280 PRO H H N N 281 PRO HA H N N 282 PRO HB2 H N N 283 PRO HB3 H N N 284 PRO HG2 H N N 285 PRO HG3 H N N 286 PRO HD2 H N N 287 PRO HD3 H N N 288 PRO HXT H N N 289 SER N N N N 290 SER CA C N S 291 SER C C N N 292 SER O O N N 293 SER CB C N N 294 SER OG O N N 295 SER OXT O N N 296 SER H H N N 297 SER H2 H N N 298 SER HA H N N 299 SER HB2 H N N 300 SER HB3 H N N 301 SER HG H N N 302 SER HXT H N N 303 THR N N N N 304 THR CA C N S 305 THR C C N N 306 THR O O N N 307 THR CB C N R 308 THR OG1 O N N 309 THR CG2 C N N 310 THR OXT O N N 311 THR H H N N 312 THR H2 H N N 313 THR HA H N N 314 THR HB H N N 315 THR HG1 H N N 316 THR HG21 H N N 317 THR HG22 H N N 318 THR HG23 H N N 319 THR HXT H N N 320 TRP N N N N 321 TRP CA C N S 322 TRP C C N N 323 TRP O O N N 324 TRP CB C N N 325 TRP CG C Y N 326 TRP CD1 C Y N 327 TRP CD2 C Y N 328 TRP NE1 N Y N 329 TRP CE2 C Y N 330 TRP CE3 C Y N 331 TRP CZ2 C Y N 332 TRP CZ3 C Y N 333 TRP CH2 C Y N 334 TRP OXT O N N 335 TRP H H N N 336 TRP H2 H N N 337 TRP HA H N N 338 TRP HB2 H N N 339 TRP HB3 H N N 340 TRP HD1 H N N 341 TRP HE1 H N N 342 TRP HE3 H N N 343 TRP HZ2 H N N 344 TRP HZ3 H N N 345 TRP HH2 H N N 346 TRP HXT H N N 347 TYR N N N N 348 TYR CA C N S 349 TYR C C N N 350 TYR O O N N 351 TYR CB C N N 352 TYR CG C Y N 353 TYR CD1 C Y N 354 TYR CD2 C Y N 355 TYR CE1 C Y N 356 TYR CE2 C Y N 357 TYR CZ C Y N 358 TYR OH O N N 359 TYR OXT O N N 360 TYR H H N N 361 TYR H2 H N N 362 TYR HA H N N 363 TYR HB2 H N N 364 TYR HB3 H N N 365 TYR HD1 H N N 366 TYR HD2 H N N 367 TYR HE1 H N N 368 TYR HE2 H N N 369 TYR HH H N N 370 TYR HXT H N N 371 VAL N N N N 372 VAL CA C N S 373 VAL C C N N 374 VAL O O N N 375 VAL CB C N N 376 VAL CG1 C N N 377 VAL CG2 C N N 378 VAL OXT O N N 379 VAL H H N N 380 VAL H2 H N N 381 VAL HA H N N 382 VAL HB H N N 383 VAL HG11 H N N 384 VAL HG12 H N N 385 VAL HG13 H N N 386 VAL HG21 H N N 387 VAL HG22 H N N 388 VAL HG23 H N N 389 VAL HXT H N N 390 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 GLN N CA sing N N 83 GLN N H sing N N 84 GLN N H2 sing N N 85 GLN CA C sing N N 86 GLN CA CB sing N N 87 GLN CA HA sing N N 88 GLN C O doub N N 89 GLN C OXT sing N N 90 GLN CB CG sing N N 91 GLN CB HB2 sing N N 92 GLN CB HB3 sing N N 93 GLN CG CD sing N N 94 GLN CG HG2 sing N N 95 GLN CG HG3 sing N N 96 GLN CD OE1 doub N N 97 GLN CD NE2 sing N N 98 GLN NE2 HE21 sing N N 99 GLN NE2 HE22 sing N N 100 GLN OXT HXT sing N N 101 GLU N CA sing N N 102 GLU N H sing N N 103 GLU N H2 sing N N 104 GLU CA C sing N N 105 GLU CA CB sing N N 106 GLU CA HA sing N N 107 GLU C O doub N N 108 GLU C OXT sing N N 109 GLU CB CG sing N N 110 GLU CB HB2 sing N N 111 GLU CB HB3 sing N N 112 GLU CG CD sing N N 113 GLU CG HG2 sing N N 114 GLU CG HG3 sing N N 115 GLU CD OE1 doub N N 116 GLU CD OE2 sing N N 117 GLU OE2 HE2 sing N N 118 GLU OXT HXT sing N N 119 GLY N CA sing N N 120 GLY N H sing N N 121 GLY N H2 sing N N 122 GLY CA C sing N N 123 GLY CA HA2 sing N N 124 GLY CA HA3 sing N N 125 GLY C O doub N N 126 GLY C OXT sing N N 127 GLY OXT HXT sing N N 128 HIS N CA sing N N 129 HIS N H sing N N 130 HIS N H2 sing N N 131 HIS CA C sing N N 132 HIS CA CB sing N N 133 HIS CA HA sing N N 134 HIS C O doub N N 135 HIS C OXT sing N N 136 HIS CB CG sing N N 137 HIS CB HB2 sing N N 138 HIS CB HB3 sing N N 139 HIS CG ND1 sing Y N 140 HIS CG CD2 doub Y N 141 HIS ND1 CE1 doub Y N 142 HIS ND1 HD1 sing N N 143 HIS CD2 NE2 sing Y N 144 HIS CD2 HD2 sing N N 145 HIS CE1 NE2 sing Y N 146 HIS CE1 HE1 sing N N 147 HIS NE2 HE2 sing N N 148 HIS OXT HXT sing N N 149 HOH O H1 sing N N 150 HOH O H2 sing N N 151 ILE N CA sing N N 152 ILE N H sing N N 153 ILE N H2 sing N N 154 ILE CA C sing N N 155 ILE CA CB sing N N 156 ILE CA HA sing N N 157 ILE C O doub N N 158 ILE C OXT sing N N 159 ILE CB CG1 sing N N 160 ILE CB CG2 sing N N 161 ILE CB HB sing N N 162 ILE CG1 CD1 sing N N 163 ILE CG1 HG12 sing N N 164 ILE CG1 HG13 sing N N 165 ILE CG2 HG21 sing N N 166 ILE CG2 HG22 sing N N 167 ILE CG2 HG23 sing N N 168 ILE CD1 HD11 sing N N 169 ILE CD1 HD12 sing N N 170 ILE CD1 HD13 sing N N 171 ILE OXT HXT sing N N 172 LEU N CA sing N N 173 LEU N H sing N N 174 LEU N H2 sing N N 175 LEU CA C sing N N 176 LEU CA CB sing N N 177 LEU CA HA sing N N 178 LEU C O doub N N 179 LEU C OXT sing N N 180 LEU CB CG sing N N 181 LEU CB HB2 sing N N 182 LEU CB HB3 sing N N 183 LEU CG CD1 sing N N 184 LEU CG CD2 sing N N 185 LEU CG HG sing N N 186 LEU CD1 HD11 sing N N 187 LEU CD1 HD12 sing N N 188 LEU CD1 HD13 sing N N 189 LEU CD2 HD21 sing N N 190 LEU CD2 HD22 sing N N 191 LEU CD2 HD23 sing N N 192 LEU OXT HXT sing N N 193 LYS N CA sing N N 194 LYS N H sing N N 195 LYS N H2 sing N N 196 LYS CA C sing N N 197 LYS CA CB sing N N 198 LYS CA HA sing N N 199 LYS C O doub N N 200 LYS C OXT sing N N 201 LYS CB CG sing N N 202 LYS CB HB2 sing N N 203 LYS CB HB3 sing N N 204 LYS CG CD sing N N 205 LYS CG HG2 sing N N 206 LYS CG HG3 sing N N 207 LYS CD CE sing N N 208 LYS CD HD2 sing N N 209 LYS CD HD3 sing N N 210 LYS CE NZ sing N N 211 LYS CE HE2 sing N N 212 LYS CE HE3 sing N N 213 LYS NZ HZ1 sing N N 214 LYS NZ HZ2 sing N N 215 LYS NZ HZ3 sing N N 216 LYS OXT HXT sing N N 217 MET N CA sing N N 218 MET N H sing N N 219 MET N H2 sing N N 220 MET CA C sing N N 221 MET CA CB sing N N 222 MET CA HA sing N N 223 MET C O doub N N 224 MET C OXT sing N N 225 MET CB CG sing N N 226 MET CB HB2 sing N N 227 MET CB HB3 sing N N 228 MET CG SD sing N N 229 MET CG HG2 sing N N 230 MET CG HG3 sing N N 231 MET SD CE sing N N 232 MET CE HE1 sing N N 233 MET CE HE2 sing N N 234 MET CE HE3 sing N N 235 MET OXT HXT sing N N 236 PHE N CA sing N N 237 PHE N H sing N N 238 PHE N H2 sing N N 239 PHE CA C sing N N 240 PHE CA CB sing N N 241 PHE CA HA sing N N 242 PHE C O doub N N 243 PHE C OXT sing N N 244 PHE CB CG sing N N 245 PHE CB HB2 sing N N 246 PHE CB HB3 sing N N 247 PHE CG CD1 doub Y N 248 PHE CG CD2 sing Y N 249 PHE CD1 CE1 sing Y N 250 PHE CD1 HD1 sing N N 251 PHE CD2 CE2 doub Y N 252 PHE CD2 HD2 sing N N 253 PHE CE1 CZ doub Y N 254 PHE CE1 HE1 sing N N 255 PHE CE2 CZ sing Y N 256 PHE CE2 HE2 sing N N 257 PHE CZ HZ sing N N 258 PHE OXT HXT sing N N 259 PRO N CA sing N N 260 PRO N CD sing N N 261 PRO N H sing N N 262 PRO CA C sing N N 263 PRO CA CB sing N N 264 PRO CA HA sing N N 265 PRO C O doub N N 266 PRO C OXT sing N N 267 PRO CB CG sing N N 268 PRO CB HB2 sing N N 269 PRO CB HB3 sing N N 270 PRO CG CD sing N N 271 PRO CG HG2 sing N N 272 PRO CG HG3 sing N N 273 PRO CD HD2 sing N N 274 PRO CD HD3 sing N N 275 PRO OXT HXT sing N N 276 SER N CA sing N N 277 SER N H sing N N 278 SER N H2 sing N N 279 SER CA C sing N N 280 SER CA CB sing N N 281 SER CA HA sing N N 282 SER C O doub N N 283 SER C OXT sing N N 284 SER CB OG sing N N 285 SER CB HB2 sing N N 286 SER CB HB3 sing N N 287 SER OG HG sing N N 288 SER OXT HXT sing N N 289 THR N CA sing N N 290 THR N H sing N N 291 THR N H2 sing N N 292 THR CA C sing N N 293 THR CA CB sing N N 294 THR CA HA sing N N 295 THR C O doub N N 296 THR C OXT sing N N 297 THR CB OG1 sing N N 298 THR CB CG2 sing N N 299 THR CB HB sing N N 300 THR OG1 HG1 sing N N 301 THR CG2 HG21 sing N N 302 THR CG2 HG22 sing N N 303 THR CG2 HG23 sing N N 304 THR OXT HXT sing N N 305 TRP N CA sing N N 306 TRP N H sing N N 307 TRP N H2 sing N N 308 TRP CA C sing N N 309 TRP CA CB sing N N 310 TRP CA HA sing N N 311 TRP C O doub N N 312 TRP C OXT sing N N 313 TRP CB CG sing N N 314 TRP CB HB2 sing N N 315 TRP CB HB3 sing N N 316 TRP CG CD1 doub Y N 317 TRP CG CD2 sing Y N 318 TRP CD1 NE1 sing Y N 319 TRP CD1 HD1 sing N N 320 TRP CD2 CE2 doub Y N 321 TRP CD2 CE3 sing Y N 322 TRP NE1 CE2 sing Y N 323 TRP NE1 HE1 sing N N 324 TRP CE2 CZ2 sing Y N 325 TRP CE3 CZ3 doub Y N 326 TRP CE3 HE3 sing N N 327 TRP CZ2 CH2 doub Y N 328 TRP CZ2 HZ2 sing N N 329 TRP CZ3 CH2 sing Y N 330 TRP CZ3 HZ3 sing N N 331 TRP CH2 HH2 sing N N 332 TRP OXT HXT sing N N 333 TYR N CA sing N N 334 TYR N H sing N N 335 TYR N H2 sing N N 336 TYR CA C sing N N 337 TYR CA CB sing N N 338 TYR CA HA sing N N 339 TYR C O doub N N 340 TYR C OXT sing N N 341 TYR CB CG sing N N 342 TYR CB HB2 sing N N 343 TYR CB HB3 sing N N 344 TYR CG CD1 doub Y N 345 TYR CG CD2 sing Y N 346 TYR CD1 CE1 sing Y N 347 TYR CD1 HD1 sing N N 348 TYR CD2 CE2 doub Y N 349 TYR CD2 HD2 sing N N 350 TYR CE1 CZ doub Y N 351 TYR CE1 HE1 sing N N 352 TYR CE2 CZ sing Y N 353 TYR CE2 HE2 sing N N 354 TYR CZ OH sing N N 355 TYR OH HH sing N N 356 TYR OXT HXT sing N N 357 VAL N CA sing N N 358 VAL N H sing N N 359 VAL N H2 sing N N 360 VAL CA C sing N N 361 VAL CA CB sing N N 362 VAL CA HA sing N N 363 VAL C O doub N N 364 VAL C OXT sing N N 365 VAL CB CG1 sing N N 366 VAL CB CG2 sing N N 367 VAL CB HB sing N N 368 VAL CG1 HG11 sing N N 369 VAL CG1 HG12 sing N N 370 VAL CG1 HG13 sing N N 371 VAL CG2 HG21 sing N N 372 VAL CG2 HG22 sing N N 373 VAL CG2 HG23 sing N N 374 VAL OXT HXT sing N N 375 # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 2RN2 _pdbx_initial_refinement_model.details ? #