HEADER TRANSCRIPTION 12-APR-07 2YVE TITLE CRYSTAL STRUCTURE OF THE METHYLENE BLUE-BOUND FORM OF THE MULTI-DRUG TITLE 2 BINDING TRANSCRIPTIONAL REPRESSOR CGMR COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRANSCRIPTIONAL REGULATOR; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: BACTERIAL REGULATORY PROTEIN, TETR FAMILY, CGL2612; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CORYNEBACTERIUM GLUTAMICUM; SOURCE 3 ORGANISM_TAXID: 196627; SOURCE 4 STRAIN: ATCC13032; SOURCE 5 GENE: CGL2612; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET26B KEYWDS TRANSCRIPTIONAL REGULATOR, HELIX-TURN-HELIX, TETR-FAMILY, KEYWDS 2 TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR H.ITOU,Y.SHIRAKIHARA,I.TANAKA REVDAT 7 25-OCT-23 2YVE 1 REMARK SEQADV REVDAT 6 13-JUL-11 2YVE 1 VERSN REVDAT 5 13-OCT-10 2YVE 1 JRNL REMARK REVDAT 4 18-AUG-10 2YVE 1 JRNL REVDAT 3 24-FEB-09 2YVE 1 VERSN REVDAT 2 01-JUL-08 2YVE 1 TITLE REMARK REVDAT 1 15-APR-08 2YVE 0 JRNL AUTH H.ITOU,N.WATANABE,M.YAO,Y.SHIRAKIHARA,I.TANAKA JRNL TITL CRYSTAL STRUCTURES OF THE MULTIDRUG BINDING REPRESSOR JRNL TITL 2 CORYNEBACTERIUMGLUTAMICUM CGMR IN COMPLEX WITH INDUCERS AND JRNL TITL 3 WITH AN OPERATOR JRNL REF J.MOL.BIOL. V. 403 174 2010 JRNL REFN ISSN 0022-2836 JRNL PMID 20691702 JRNL DOI 10.1016/J.JMB.2010.07.042 REMARK 2 REMARK 2 RESOLUTION. 1.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 9.97 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 1296929.630 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 95.4 REMARK 3 NUMBER OF REFLECTIONS : 77945 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.203 REMARK 3 FREE R VALUE : 0.223 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.900 REMARK 3 FREE R VALUE TEST SET COUNT : 7713 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.003 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.49 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 92.80 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 11258 REMARK 3 BIN R VALUE (WORKING SET) : 0.2090 REMARK 3 BIN FREE R VALUE : 0.2440 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 9.80 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 1224 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.007 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2797 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 77 REMARK 3 SOLVENT ATOMS : 322 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 15.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 17.60 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.01000 REMARK 3 B22 (A**2) : 0.64000 REMARK 3 B33 (A**2) : -0.64000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.15 REMARK 3 ESD FROM SIGMAA (A) : 0.04 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.17 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.08 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.400 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 18.90 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.040 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 0.910 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 1.450 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 1.810 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 2.640 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.59 REMARK 3 BSOL : 76.53 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : ION.PARAM REMARK 3 PARAMETER FILE 4 : PARAM:MTB_GOL_CAC.PARAM REMARK 3 PARAMETER FILE 5 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : WATER.TOP REMARK 3 TOPOLOGY FILE 3 : ION.TOP REMARK 3 TOPOLOGY FILE 4 : PARAM:MTB_GOL_CAC.TOP REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2YVE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 13-APR-07. REMARK 100 THE DEPOSITION ID IS D_1000027182. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-FEB-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : BL-17A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 78066 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.400 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.3 REMARK 200 DATA REDUNDANCY : 7.500 REMARK 200 R MERGE (I) : 0.05200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 19.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.45 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.5 REMARK 200 DATA REDUNDANCY IN SHELL : 7.60 REMARK 200 R MERGE FOR SHELL (I) : 0.22800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 1V7B REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.04 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.41 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M CACODYLATE, 0.1M MGCL2, 8% PEG REMARK 280 3350, PH 6.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 30.05500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 50.92500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 33.68000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 50.92500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 30.05500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 33.68000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6670 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16300 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -42.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLN A 176 REMARK 465 THR A 177 REMARK 465 GLU A 178 REMARK 465 LEU A 179 REMARK 465 HIS A 180 REMARK 465 HIS A 181 REMARK 465 HIS A 182 REMARK 465 HIS A 183 REMARK 465 HIS A 184 REMARK 465 HIS A 185 REMARK 465 MET B 1 REMARK 465 ARG B 2 REMARK 465 SER B 175 REMARK 465 GLN B 176 REMARK 465 THR B 177 REMARK 465 GLU B 178 REMARK 465 LEU B 179 REMARK 465 HIS B 180 REMARK 465 HIS B 181 REMARK 465 HIS B 182 REMARK 465 HIS B 183 REMARK 465 HIS B 184 REMARK 465 HIS B 185 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 ND1 HIS A 153 O HOH A 3002 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 3055 O HOH A 3066 3545 2.00 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 MET A 55 CG - SD - CE ANGL. DEV. = -15.9 DEGREES REMARK 500 LEU B 100 CA - CB - CG ANGL. DEV. = 14.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 20 -102.26 -126.74 REMARK 500 TYR B 20 -94.79 -112.91 REMARK 500 ASP B 154 31.53 -94.03 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 3001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MBT A 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MBT B 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 2003 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 2004 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 2005 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 2001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 2002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 2006 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2ZOY RELATED DB: PDB REMARK 900 THE SAME PROTEIN IN LIGAND-FREE STATE REMARK 900 RELATED ID: 2ZOZ RELATED DB: PDB REMARK 900 THE SAME PROTEIN COMPLEXED WITH ETHIDIUM REMARK 900 RELATED ID: 2YVH RELATED DB: PDB REMARK 900 THE SAME PROTEIN BOUND TO DNA DBREF 2YVE A 1 177 UNP Q8NMG3 Q8NMG3_CORGL 1 177 DBREF 2YVE B 1 177 UNP Q8NMG3 Q8NMG3_CORGL 1 177 SEQADV 2YVE GLU A 178 UNP Q8NMG3 EXPRESSION TAG SEQADV 2YVE LEU A 179 UNP Q8NMG3 EXPRESSION TAG SEQADV 2YVE HIS A 180 UNP Q8NMG3 EXPRESSION TAG SEQADV 2YVE HIS A 181 UNP Q8NMG3 EXPRESSION TAG SEQADV 2YVE HIS A 182 UNP Q8NMG3 EXPRESSION TAG SEQADV 2YVE HIS A 183 UNP Q8NMG3 EXPRESSION TAG SEQADV 2YVE HIS A 184 UNP Q8NMG3 EXPRESSION TAG SEQADV 2YVE HIS A 185 UNP Q8NMG3 EXPRESSION TAG SEQADV 2YVE GLU B 178 UNP Q8NMG3 EXPRESSION TAG SEQADV 2YVE LEU B 179 UNP Q8NMG3 EXPRESSION TAG SEQADV 2YVE HIS B 180 UNP Q8NMG3 EXPRESSION TAG SEQADV 2YVE HIS B 181 UNP Q8NMG3 EXPRESSION TAG SEQADV 2YVE HIS B 182 UNP Q8NMG3 EXPRESSION TAG SEQADV 2YVE HIS B 183 UNP Q8NMG3 EXPRESSION TAG SEQADV 2YVE HIS B 184 UNP Q8NMG3 EXPRESSION TAG SEQADV 2YVE HIS B 185 UNP Q8NMG3 EXPRESSION TAG SEQRES 1 A 185 MET ARG THR SER LYS LYS GLU MET ILE LEU ARG THR ALA SEQRES 2 A 185 ILE ASP TYR ILE GLY GLU TYR SER LEU GLU THR LEU SER SEQRES 3 A 185 TYR ASP SER LEU ALA GLU ALA THR GLY LEU SER LYS SER SEQRES 4 A 185 GLY LEU ILE TYR HIS PHE PRO SER ARG HIS ALA LEU LEU SEQRES 5 A 185 LEU GLY MET HIS GLU LEU LEU ALA ASP ASP TRP ASP LYS SEQRES 6 A 185 GLU LEU ARG ASP ILE THR ARG ASP PRO GLU ASP PRO LEU SEQRES 7 A 185 GLU ARG LEU ARG ALA VAL VAL VAL THR LEU ALA GLU ASN SEQRES 8 A 185 VAL SER ARG PRO GLU LEU LEU LEU LEU ILE ASP ALA PRO SEQRES 9 A 185 SER HIS PRO ASP PHE LEU ASN ALA TRP ARG THR VAL ASN SEQRES 10 A 185 HIS GLN TRP ILE PRO ASP THR ASP ASP LEU GLU ASN ASP SEQRES 11 A 185 ALA HIS LYS ARG ALA VAL TYR LEU VAL GLN LEU ALA ALA SEQRES 12 A 185 ASP GLY LEU PHE VAL HIS ASP TYR ILE HIS ASP ASP VAL SEQRES 13 A 185 LEU SER LYS SER LYS ARG GLN ALA MET LEU GLU THR ILE SEQRES 14 A 185 LEU GLU LEU ILE PRO SER GLN THR GLU LEU HIS HIS HIS SEQRES 15 A 185 HIS HIS HIS SEQRES 1 B 185 MET ARG THR SER LYS LYS GLU MET ILE LEU ARG THR ALA SEQRES 2 B 185 ILE ASP TYR ILE GLY GLU TYR SER LEU GLU THR LEU SER SEQRES 3 B 185 TYR ASP SER LEU ALA GLU ALA THR GLY LEU SER LYS SER SEQRES 4 B 185 GLY LEU ILE TYR HIS PHE PRO SER ARG HIS ALA LEU LEU SEQRES 5 B 185 LEU GLY MET HIS GLU LEU LEU ALA ASP ASP TRP ASP LYS SEQRES 6 B 185 GLU LEU ARG ASP ILE THR ARG ASP PRO GLU ASP PRO LEU SEQRES 7 B 185 GLU ARG LEU ARG ALA VAL VAL VAL THR LEU ALA GLU ASN SEQRES 8 B 185 VAL SER ARG PRO GLU LEU LEU LEU LEU ILE ASP ALA PRO SEQRES 9 B 185 SER HIS PRO ASP PHE LEU ASN ALA TRP ARG THR VAL ASN SEQRES 10 B 185 HIS GLN TRP ILE PRO ASP THR ASP ASP LEU GLU ASN ASP SEQRES 11 B 185 ALA HIS LYS ARG ALA VAL TYR LEU VAL GLN LEU ALA ALA SEQRES 12 B 185 ASP GLY LEU PHE VAL HIS ASP TYR ILE HIS ASP ASP VAL SEQRES 13 B 185 LEU SER LYS SER LYS ARG GLN ALA MET LEU GLU THR ILE SEQRES 14 B 185 LEU GLU LEU ILE PRO SER GLN THR GLU LEU HIS HIS HIS SEQRES 15 B 185 HIS HIS HIS HET CL A3001 1 HET MBT A1001 20 HET GOL A2003 6 HET GOL A2004 6 HET GOL A2005 6 HET MBT B1002 20 HET GOL B2001 6 HET GOL B2002 6 HET GOL B2006 6 HETNAM CL CHLORIDE ION HETNAM MBT 3,7-BIS(DIMETHYLAMINO)PHENOTHIAZIN-5-IUM HETNAM GOL GLYCEROL HETSYN MBT METHYLENE BLUE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 CL CL 1- FORMUL 4 MBT 2(C16 H18 N3 S 1+) FORMUL 5 GOL 6(C3 H8 O3) FORMUL 12 HOH *322(H2 O) HELIX 1 1 SER A 4 TYR A 20 1 17 HELIX 2 2 SER A 26 GLY A 35 1 10 HELIX 3 3 SER A 37 PHE A 45 1 9 HELIX 4 4 SER A 47 THR A 71 1 25 HELIX 5 5 ASP A 76 ALA A 89 1 14 HELIX 6 6 SER A 93 ALA A 103 1 11 HELIX 7 7 HIS A 106 ILE A 121 1 16 HELIX 8 8 ASP A 126 ASN A 129 5 4 HELIX 9 9 ASP A 130 HIS A 149 1 20 HELIX 10 10 ASP A 150 ILE A 152 5 3 HELIX 11 11 SER A 158 LEU A 172 1 15 HELIX 12 12 SER B 4 TYR B 20 1 17 HELIX 13 13 SER B 26 GLY B 35 1 10 HELIX 14 14 SER B 37 PHE B 45 1 9 HELIX 15 15 SER B 47 THR B 71 1 25 HELIX 16 16 ASP B 76 ALA B 89 1 14 HELIX 17 17 SER B 93 ALA B 103 1 11 HELIX 18 18 HIS B 106 ILE B 121 1 16 HELIX 19 19 ASP B 126 ASN B 129 5 4 HELIX 20 20 ASP B 130 HIS B 153 1 24 HELIX 21 21 SER B 158 ILE B 173 1 16 SITE 1 AC1 5 LYS A 5 LYS A 6 ASN A 129 ALA A 131 SITE 2 AC1 5 HOH A3092 SITE 1 AC2 8 TRP A 63 GLU A 66 THR A 87 LEU A 88 SITE 2 AC2 8 GLU A 96 TRP A 113 PHE A 147 HOH A3010 SITE 1 AC3 10 ILE A 152 TRP B 63 GLU B 66 THR B 87 SITE 2 AC3 10 LEU B 88 GLU B 90 GLU B 96 TRP B 113 SITE 3 AC3 10 PHE B 147 HOH B2017 SITE 1 AC4 4 ALA A 131 ARG A 134 HOH A3060 THR B 168 SITE 1 AC5 5 ALA A 50 LEU A 53 GLU A 57 HOH A3102 SITE 2 AC5 5 HOH A3118 SITE 1 AC6 8 ARG A 82 LEU A 170 HOH A3041 HOH A3051 SITE 2 AC6 8 HOH A3126 HIS B 49 HIS B 106 HOH B2092 SITE 1 AC7 8 LEU A 100 ALA A 103 PRO A 104 ASN A 117 SITE 2 AC7 8 TYR B 151 ILE B 152 HIS B 153 HOH B2095 SITE 1 AC8 4 THR B 12 ASP B 15 ALA B 33 HOH B2105 SITE 1 AC9 11 ASP A 69 HOH A3020 HOH A3066 ASN B 117 SITE 2 AC9 11 HIS B 118 ILE B 121 THR B 124 HOH B2016 SITE 3 AC9 11 HOH B2070 HOH B2076 HOH B2132 CRYST1 60.110 67.360 101.850 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016636 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014846 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009818 0.00000