HEADER OXIDOREDUCTASE 12-APR-07 2YVF TITLE CRYSTAL STRUCTURE OF FERREDOXIN REDUCTASE BPHA4 (HYDROQUINONE) COMPND MOL_ID: 1; COMPND 2 MOLECULE: FERREDOXIN REDUCTASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: FERREDOXIN REDUCTASE BPHA4; COMPND 5 EC: 1.18.1.2; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS SP.; SOURCE 3 ORGANISM_TAXID: 306; SOURCE 4 STRAIN: STRAIN KKS102; SOURCE 5 GENE: BPHA4; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS FLAVOPROTEIN, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR T.SENDA,M.SENDA REVDAT 4 13-MAR-24 2YVF 1 REMARK REVDAT 3 13-JUL-11 2YVF 1 VERSN REVDAT 2 24-FEB-09 2YVF 1 VERSN REVDAT 1 16-OCT-07 2YVF 0 JRNL AUTH M.SENDA,S.KISHIGAMI,S.KIMURA,M.FUKUDA,T.ISHIDA,T.SENDA JRNL TITL MOLECULAR MECHANISM OF THE REDOX-DEPENDENT INTERACTION JRNL TITL 2 BETWEEN NADH-DEPENDENT FERREDOXIN REDUCTASE AND RIESKE-TYPE JRNL TITL 3 [2FE-2S] FERREDOXIN JRNL REF J.MOL.BIOL. V. 373 382 2007 JRNL REFN ISSN 0022-2836 JRNL PMID 17850818 JRNL DOI 10.1016/J.JMB.2007.08.002 REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 15.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 57683 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.189 REMARK 3 R VALUE (WORKING SET) : 0.188 REMARK 3 FREE R VALUE : 0.214 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3036 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.64 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4065 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2360 REMARK 3 BIN FREE R VALUE SET COUNT : 214 REMARK 3 BIN FREE R VALUE : 0.2780 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2963 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 112 REMARK 3 SOLVENT ATOMS : 207 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.59 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.36000 REMARK 3 B22 (A**2) : -0.36000 REMARK 3 B33 (A**2) : 0.54000 REMARK 3 B12 (A**2) : -0.18000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.083 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.083 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.057 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.191 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.967 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.957 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3150 ; 0.011 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4303 ; 1.420 ; 2.013 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 406 ; 5.308 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 123 ;30.699 ;22.927 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 459 ;12.823 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 30 ;16.397 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 506 ; 0.084 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2383 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1509 ; 0.200 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2154 ; 0.309 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 246 ; 0.139 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 52 ; 0.239 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 17 ; 0.212 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2051 ; 0.754 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3200 ; 1.168 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1225 ; 1.978 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1100 ; 3.128 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 6 A 111 REMARK 3 RESIDUE RANGE : A 238 A 317 REMARK 3 ORIGIN FOR THE GROUP (A): 53.7232 12.2057 11.8856 REMARK 3 T TENSOR REMARK 3 T11: -0.0099 T22: -0.0714 REMARK 3 T33: -0.0508 T12: 0.0227 REMARK 3 T13: 0.0124 T23: -0.0288 REMARK 3 L TENSOR REMARK 3 L11: 0.9150 L22: 1.1533 REMARK 3 L33: 0.8661 L12: -0.3452 REMARK 3 L13: 0.2959 L23: 0.3312 REMARK 3 S TENSOR REMARK 3 S11: -0.0638 S12: -0.1165 S13: 0.0485 REMARK 3 S21: 0.0985 S22: 0.0614 S23: 0.0157 REMARK 3 S31: 0.0104 S32: -0.0711 S33: 0.0023 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 112 A 237 REMARK 3 ORIGIN FOR THE GROUP (A): 80.7813 20.5414 5.2311 REMARK 3 T TENSOR REMARK 3 T11: -0.0614 T22: 0.0613 REMARK 3 T33: -0.0099 T12: -0.1055 REMARK 3 T13: 0.0029 T23: -0.0214 REMARK 3 L TENSOR REMARK 3 L11: 1.8389 L22: 1.1924 REMARK 3 L33: 1.5223 L12: 0.3429 REMARK 3 L13: 0.4977 L23: -0.1769 REMARK 3 S TENSOR REMARK 3 S11: -0.2168 S12: 0.4036 S13: 0.0919 REMARK 3 S21: -0.0086 S22: 0.1102 S23: -0.1884 REMARK 3 S31: -0.1985 S32: 0.4242 S33: 0.1066 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 318 A 406 REMARK 3 ORIGIN FOR THE GROUP (A): 74.7315 20.0001 32.9383 REMARK 3 T TENSOR REMARK 3 T11: 0.0301 T22: -0.0764 REMARK 3 T33: -0.0795 T12: 0.0566 REMARK 3 T13: -0.0956 T23: -0.0452 REMARK 3 L TENSOR REMARK 3 L11: 2.3892 L22: 2.9840 REMARK 3 L33: 5.7730 L12: 0.0332 REMARK 3 L13: -0.5896 L23: 2.0536 REMARK 3 S TENSOR REMARK 3 S11: -0.0680 S12: -0.3527 S13: 0.0610 REMARK 3 S21: 0.5146 S22: 0.0327 S23: -0.1661 REMARK 3 S31: 0.1690 S32: 0.1420 S33: 0.0353 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1449 A 1449 REMARK 3 ORIGIN FOR THE GROUP (A): 63.4276 12.9234 9.4269 REMARK 3 T TENSOR REMARK 3 T11: 0.0247 T22: -0.0223 REMARK 3 T33: -0.0058 T12: 0.0233 REMARK 3 T13: -0.0086 T23: -0.0455 REMARK 3 L TENSOR REMARK 3 L11: 2.8291 L22: 1.2238 REMARK 3 L33: 1.7260 L12: -0.2564 REMARK 3 L13: 1.9814 L23: 0.0635 REMARK 3 S TENSOR REMARK 3 S11: -0.1136 S12: 0.1628 S13: 0.0872 REMARK 3 S21: 0.0166 S22: 0.1790 S23: -0.0264 REMARK 3 S31: -0.1547 S32: 0.1745 S33: -0.0653 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1500 A 1500 REMARK 3 ORIGIN FOR THE GROUP (A): 71.7538 22.8228 10.5559 REMARK 3 T TENSOR REMARK 3 T11: 0.1757 T22: 0.1214 REMARK 3 T33: 0.1550 T12: -0.0285 REMARK 3 T13: -0.0099 T23: -0.0090 REMARK 3 L TENSOR REMARK 3 L11: 28.0541 L22: 17.7879 REMARK 3 L33: 2.4525 L12: 12.2187 REMARK 3 L13: 0.8656 L23: -5.1221 REMARK 3 S TENSOR REMARK 3 S11: -0.1247 S12: -0.6856 S13: -0.4048 REMARK 3 S21: 0.6533 S22: 0.0687 S23: -0.8159 REMARK 3 S31: -0.7437 S32: 0.1934 S33: 0.0560 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2YVF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 13-APR-07. REMARK 100 THE DEPOSITION ID IS D_1000027183. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-JUN-05 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 5.40 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : AR-NW12A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9792 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : ADSC REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 60816 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 15.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.9 REMARK 200 DATA REDUNDANCY : 11.60 REMARK 200 R MERGE (I) : 0.06700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 21.5400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.68 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.4 REMARK 200 DATA REDUNDANCY IN SHELL : 7.40 REMARK 200 R MERGE FOR SHELL (I) : 0.68500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: DIFFERENCE FOURIER REMARK 200 SOFTWARE USED: XTALVIEW REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.34 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.69 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2M SODIUM FORMATE, 0.1M SODIUM REMARK 280 ACETATE, PH 5.40, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 56.48767 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 112.97533 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 84.73150 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 141.21917 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 28.24383 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 56.48767 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 112.97533 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 141.21917 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 84.73150 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 28.24383 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 28.24383 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 GLN A 3 REMARK 465 GLU A 4 REMARK 465 ALA A 5 REMARK 465 ALA A 407 REMARK 465 ALA A 408 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 69 CG CD CE NZ REMARK 470 ARG A 143 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 147 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 361 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 379 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 2187 O HOH A 2190 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 2171 O HOH A 2171 8555 2.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ARG A 225 NE ARG A 225 CZ 0.106 REMARK 500 ARG A 225 CZ ARG A 225 NH1 0.214 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 225 NE - CZ - NH1 ANGL. DEV. = 6.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 53 -106.28 -136.73 REMARK 500 ALA A 71 65.31 -118.18 REMARK 500 ARG A 130 -35.41 -134.21 REMARK 500 GLN A 145 -5.12 79.30 REMARK 500 ASP A 215 57.81 33.96 REMARK 500 ASP A 252 84.91 -159.06 REMARK 500 ALA A 349 71.62 51.02 REMARK 500 LYS A 351 112.56 -160.62 REMARK 500 ASN A 370 50.55 -148.48 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FAD A 1449 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAD A 1500 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT A 2001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT A 2002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT A 2003 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT A 2004 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT A 2005 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2YVG RELATED DB: PDB DBREF 2YVF A 1 408 UNP Q52437 Q52437_PSES1 1 408 SEQRES 1 A 408 MET SER GLN GLU ALA LEU LYS ALA PRO VAL VAL VAL LEU SEQRES 2 A 408 GLY ALA GLY LEU ALA SER VAL SER PHE VAL ALA GLU LEU SEQRES 3 A 408 ARG GLN ALA GLY TYR GLN GLY LEU ILE THR VAL VAL GLY SEQRES 4 A 408 ASP GLU ALA GLU ARG PRO TYR ASP ARG PRO PRO LEU SER SEQRES 5 A 408 LYS ASP PHE MET ALA HIS GLY ASP ALA GLU LYS ILE ARG SEQRES 6 A 408 LEU ASP CYS LYS ARG ALA PRO GLU VAL GLU TRP LEU LEU SEQRES 7 A 408 GLY VAL THR ALA GLN SER PHE ASP PRO GLN ALA HIS THR SEQRES 8 A 408 VAL ALA LEU SER ASP GLY ARG THR LEU PRO TYR GLY THR SEQRES 9 A 408 LEU VAL LEU ALA THR GLY ALA ALA PRO ARG ALA LEU PRO SEQRES 10 A 408 THR LEU GLN GLY ALA THR MET PRO VAL HIS THR LEU ARG SEQRES 11 A 408 THR LEU GLU ASP ALA ARG ARG ILE GLN ALA GLY LEU ARG SEQRES 12 A 408 PRO GLN SER ARG LEU LEU ILE VAL GLY GLY GLY VAL ILE SEQRES 13 A 408 GLY LEU GLU LEU ALA ALA THR ALA ARG THR ALA GLY VAL SEQRES 14 A 408 HIS VAL SER LEU VAL GLU THR GLN PRO ARG LEU MET SER SEQRES 15 A 408 ARG ALA ALA PRO ALA THR LEU ALA ASP PHE VAL ALA ARG SEQRES 16 A 408 TYR HIS ALA ALA GLN GLY VAL ASP LEU ARG PHE GLU ARG SEQRES 17 A 408 SER VAL THR GLY SER VAL ASP GLY VAL VAL LEU LEU ASP SEQRES 18 A 408 ASP GLY THR ARG ILE ALA ALA ASP MET VAL VAL VAL GLY SEQRES 19 A 408 ILE GLY VAL LEU ALA ASN ASP ALA LEU ALA ARG ALA ALA SEQRES 20 A 408 GLY LEU ALA CYS ASP ASP GLY ILE PHE VAL ASP ALA TYR SEQRES 21 A 408 GLY ARG THR THR CYS PRO ASP VAL TYR ALA LEU GLY ASP SEQRES 22 A 408 VAL THR ARG GLN ARG ASN PRO LEU SER GLY ARG PHE GLU SEQRES 23 A 408 ARG ILE GLU THR TRP SER ASN ALA GLN ASN GLN GLY ILE SEQRES 24 A 408 ALA VAL ALA ARG HIS LEU VAL ASP PRO THR ALA PRO GLY SEQRES 25 A 408 TYR ALA GLU LEU PRO TRP TYR TRP SER ASP GLN GLY ALA SEQRES 26 A 408 LEU ARG ILE GLN VAL ALA GLY LEU ALA SER GLY ASP GLU SEQRES 27 A 408 GLU ILE VAL ARG GLY GLU VAL SER LEU ASP ALA PRO LYS SEQRES 28 A 408 PHE THR LEU ILE GLU LEU GLN LYS GLY ARG ILE VAL GLY SEQRES 29 A 408 ALA THR CYS VAL ASN ASN ALA ARG ASP PHE ALA PRO LEU SEQRES 30 A 408 ARG ARG LEU LEU ALA VAL GLY ALA LYS PRO ASP ARG ALA SEQRES 31 A 408 ALA LEU ALA ASP PRO ALA THR ASP LEU ARG LYS LEU ALA SEQRES 32 A 408 ALA ALA VAL ALA ALA HET FAD A1449 53 HET NAD A1500 44 HET FMT A2001 3 HET FMT A2002 3 HET FMT A2003 3 HET FMT A2004 3 HET FMT A2005 3 HETNAM FAD FLAVIN-ADENINE DINUCLEOTIDE HETNAM NAD NICOTINAMIDE-ADENINE-DINUCLEOTIDE HETNAM FMT FORMIC ACID FORMUL 2 FAD C27 H33 N9 O15 P2 FORMUL 3 NAD C21 H27 N7 O14 P2 FORMUL 4 FMT 5(C H2 O2) FORMUL 9 HOH *207(H2 O) HELIX 1 1 GLY A 16 GLY A 30 1 15 HELIX 2 2 ARG A 48 SER A 52 5 5 HELIX 3 3 LYS A 53 GLY A 59 1 7 HELIX 4 4 ASP A 60 ILE A 64 5 5 HELIX 5 5 LEU A 116 GLN A 120 5 5 HELIX 6 6 THR A 131 ALA A 140 1 10 HELIX 7 7 GLY A 154 ALA A 167 1 14 HELIX 8 8 PRO A 186 GLN A 200 1 15 HELIX 9 9 ASP A 241 GLY A 248 1 8 HELIX 10 10 THR A 290 ASP A 307 1 18 HELIX 11 11 ASN A 370 VAL A 383 1 14 HELIX 12 12 ASP A 388 ASP A 394 1 7 HELIX 13 13 ASP A 398 VAL A 406 1 9 SHEET 1 A 5 GLU A 75 LEU A 78 0 SHEET 2 A 5 ILE A 35 GLY A 39 1 N VAL A 37 O LEU A 77 SHEET 3 A 5 VAL A 10 LEU A 13 1 N VAL A 12 O VAL A 38 SHEET 4 A 5 THR A 104 LEU A 107 1 O VAL A 106 N LEU A 13 SHEET 5 A 5 VAL A 268 ALA A 270 1 O TYR A 269 N LEU A 107 SHEET 1 B 3 ALA A 82 ASP A 86 0 SHEET 2 B 3 THR A 91 LEU A 94 -1 O ALA A 93 N GLN A 83 SHEET 3 B 3 THR A 99 PRO A 101 -1 O LEU A 100 N VAL A 92 SHEET 1 C 2 ALA A 111 PRO A 113 0 SHEET 2 C 2 VAL A 237 ALA A 239 -1 O LEU A 238 N ALA A 112 SHEET 1 D 5 VAL A 126 THR A 128 0 SHEET 2 D 5 MET A 230 VAL A 233 1 O VAL A 233 N HIS A 127 SHEET 3 D 5 ARG A 147 VAL A 151 1 N LEU A 149 O MET A 230 SHEET 4 D 5 HIS A 170 VAL A 174 1 O HIS A 170 N LEU A 148 SHEET 5 D 5 ASP A 203 ARG A 205 1 O ARG A 205 N LEU A 173 SHEET 1 E 3 VAL A 210 VAL A 214 0 SHEET 2 E 3 VAL A 217 LEU A 220 -1 O LEU A 219 N GLY A 212 SHEET 3 E 3 ARG A 225 ALA A 227 -1 O ILE A 226 N VAL A 218 SHEET 1 F 3 ILE A 255 PHE A 256 0 SHEET 2 F 3 THR A 275 ASN A 279 1 O ARG A 276 N ILE A 255 SHEET 3 F 3 ARG A 284 ARG A 287 -1 O ARG A 284 N ASN A 279 SHEET 1 G 5 TRP A 318 GLN A 323 0 SHEET 2 G 5 LEU A 326 GLY A 332 -1 O LEU A 326 N GLN A 323 SHEET 3 G 5 ARG A 361 VAL A 368 -1 O ALA A 365 N ALA A 331 SHEET 4 G 5 PHE A 352 GLN A 358 -1 N PHE A 352 O VAL A 368 SHEET 5 G 5 GLU A 338 ARG A 342 -1 N ILE A 340 O ILE A 355 CISPEP 1 ALA A 8 PRO A 9 0 -6.02 SITE 1 AC1 37 GLY A 14 GLY A 16 LEU A 17 ALA A 18 SITE 2 AC1 37 VAL A 38 ASP A 40 GLU A 41 ARG A 48 SITE 3 AC1 37 PRO A 49 VAL A 80 ALA A 82 ALA A 108 SITE 4 AC1 37 THR A 109 GLY A 110 LEU A 129 ARG A 130 SITE 5 AC1 37 ILE A 156 GLU A 159 GLY A 272 ASP A 273 SITE 6 AC1 37 GLU A 289 THR A 290 TRP A 291 ALA A 294 SITE 7 AC1 37 TYR A 319 TRP A 320 NAD A1500 HOH A2006 SITE 8 AC1 37 HOH A2007 HOH A2008 HOH A2009 HOH A2012 SITE 9 AC1 37 HOH A2015 HOH A2034 HOH A2041 HOH A2043 SITE 10 AC1 37 HOH A2164 SITE 1 AC2 28 ARG A 114 LEU A 116 ARG A 130 VAL A 151 SITE 2 AC2 28 GLY A 152 GLY A 154 VAL A 155 ILE A 156 SITE 3 AC2 28 GLU A 175 THR A 176 GLN A 177 ARG A 183 SITE 4 AC2 28 GLY A 234 ILE A 235 GLY A 236 VAL A 237 SITE 5 AC2 28 ASP A 273 GLU A 289 TYR A 319 FAD A1449 SITE 6 AC2 28 HOH A2087 HOH A2091 HOH A2117 HOH A2152 SITE 7 AC2 28 HOH A2159 HOH A2168 HOH A2189 HOH A2197 SITE 1 AC3 5 ASP A 54 HIS A 58 GLY A 59 ASP A 60 SITE 2 AC3 5 ASP A 215 SITE 1 AC4 6 ALA A 122 THR A 123 MET A 124 SER A 213 SITE 2 AC4 6 ASP A 215 GLY A 216 SITE 1 AC5 4 ARG A 327 ASN A 369 ASN A 370 ALA A 371 SITE 1 AC6 4 VAL A 217 ARG A 225 TRP A 320 ASP A 322 SITE 1 AC7 3 ALA A 115 LEU A 116 VAL A 126 CRYST1 97.597 97.597 169.463 90.00 90.00 120.00 P 61 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010246 0.005916 0.000000 0.00000 SCALE2 0.000000 0.011831 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005901 0.00000