HEADER LIGASE 20-APR-07 2YWC TITLE CRYSTAL STRUCTURE OF GMP SYNTHETASE FROM THERMUS THERMOPHILUS IN TITLE 2 COMPLEX WITH XMP COMPND MOL_ID: 1; COMPND 2 MOLECULE: GMP SYNTHASE [GLUTAMINE-HYDROLYZING]; COMPND 3 CHAIN: A, B, C, D; COMPND 4 SYNONYM: GLUTAMINE AMIDOTRANSFERASE, GMP SYNTHETASE; COMPND 5 EC: 6.3.5.2; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMUS THERMOPHILUS; SOURCE 3 ORGANISM_TAXID: 300852; SOURCE 4 STRAIN: HB8; SOURCE 5 GENE: GUAA; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET-11A KEYWDS GMP SYNTHETASE, XMP BINDING, ATP BINDING, PURINE NUCLEOTIDE KEYWDS 2 BIOSYNTHETIC PATHWAY, STRUCTURAL GENOMICS, NPPSFA, NATIONAL PROJECT KEYWDS 3 ON PROTEIN STRUCTURAL AND FUNCTIONAL ANALYSES, RIKEN STRUCTURAL KEYWDS 4 GENOMICS/PROTEOMICS INITIATIVE, RSGI, LIGASE EXPDTA X-RAY DIFFRACTION AUTHOR S.BABA,M.KANAGAWA,S.KURAMITSU,S.YOKOYAMA,G.SAMPEI,G.KAWAI,RIKEN AUTHOR 2 STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE (RSGI) REVDAT 6 23-OCT-24 2YWC 1 REMARK REVDAT 5 15-NOV-23 2YWC 1 REMARK REVDAT 4 25-OCT-23 2YWC 1 REMARK LINK REVDAT 3 13-JUL-11 2YWC 1 VERSN REVDAT 2 24-FEB-09 2YWC 1 VERSN REVDAT 1 23-OCT-07 2YWC 0 JRNL AUTH S.BABA,M.KANAGAWA,H.YANAI,T.ISHII,S.KURAMITSU,S.YOKOYAMA, JRNL AUTH 2 G.SAMPEI,G.KAWAI JRNL TITL CRYSTAL STRUCTURE OF GMP SYNTHETASE FROM THERMUS JRNL TITL 2 THERMOPHILUS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 31.82 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 102105.820 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 87.9 REMARK 3 NUMBER OF REFLECTIONS : 125608 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.236 REMARK 3 FREE R VALUE : 0.278 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.600 REMARK 3 FREE R VALUE TEST SET COUNT : 21549 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.002 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.34 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 67.30 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 26125 REMARK 3 BIN R VALUE (WORKING SET) : 0.4070 REMARK 3 BIN FREE R VALUE : 0.4250 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 9.60 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 2763 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.008 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 14799 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 96 REMARK 3 SOLVENT ATOMS : 306 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 25.40 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 50.50 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 5.32000 REMARK 3 B22 (A**2) : -2.33000 REMARK 3 B33 (A**2) : -2.99000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 3.11000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.34 REMARK 3 ESD FROM SIGMAA (A) : 0.48 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.40 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.48 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.007 REMARK 3 BOND ANGLES (DEGREES) : 1.400 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 23.00 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.140 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 4.510 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 7.250 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 6.970 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 10.580; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.35 REMARK 3 BSOL : 52.41 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : ION.PARAM REMARK 3 PARAMETER FILE 3 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 4 : XMP_XPLOR.PARM REMARK 3 PARAMETER FILE 5 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : ION.TOP REMARK 3 TOPOLOGY FILE 3 : WATER.TOP REMARK 3 TOPOLOGY FILE 4 : XMP_XPLOR.TOP REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2YWC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 08-MAY-07. REMARK 100 THE DEPOSITION ID IS D_1000027216. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-DEC-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL26B1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97891 REMARK 200 MONOCHROMATOR : FIXED EXIT SI 111 DOUBLE CRYSTAL REMARK 200 MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RIGAKU JUPITER 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 126620 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 200 DATA REDUNDANCY : 5.500 REMARK 200 R MERGE (I) : 0.10200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.28 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.4 REMARK 200 DATA REDUNDANCY IN SHELL : 5.10 REMARK 200 R MERGE FOR SHELL (I) : 0.79900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 2YWB REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.71 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.91 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.2M NACL, 0.1M SODIUM ACETATE, 10MM REMARK 280 XMP, PH4.4, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 71.29000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 57.60650 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 71.29000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 57.60650 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3260 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 40140 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -22.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3410 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 40070 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -23.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 15960 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 70910 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -74.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 324 REMARK 465 ALA A 325 REMARK 465 GLY A 326 REMARK 465 GLY A 327 REMARK 465 HIS A 328 REMARK 465 GLY A 329 REMARK 465 ALA A 330 REMARK 465 ALA A 331 REMARK 465 LYS A 332 REMARK 465 ILE A 333 REMARK 465 LYS A 334 REMARK 465 SER A 335 REMARK 465 HIS A 336 REMARK 465 HIS A 337 REMARK 465 ASN A 338 REMARK 465 VAL A 339 REMARK 465 ARG A 433 REMARK 465 SER A 434 REMARK 465 VAL A 435 REMARK 465 GLY A 436 REMARK 465 VAL A 437 REMARK 465 ALA A 438 REMARK 465 GLY A 439 REMARK 465 ASP A 440 REMARK 465 GLU A 441 REMARK 465 ARG A 442 REMARK 465 LYS A 443 REMARK 465 TYR A 444 REMARK 465 GLU B 323 REMARK 465 SER B 324 REMARK 465 ALA B 325 REMARK 465 GLY B 326 REMARK 465 GLY B 327 REMARK 465 HIS B 328 REMARK 465 GLY B 329 REMARK 465 ALA B 330 REMARK 465 ALA B 331 REMARK 465 LYS B 332 REMARK 465 ILE B 333 REMARK 465 LYS B 334 REMARK 465 SER B 335 REMARK 465 HIS B 336 REMARK 465 HIS B 337 REMARK 465 ASN B 338 REMARK 465 VAL B 339 REMARK 465 GLY B 340 REMARK 465 GLY B 341 REMARK 465 LEU B 342 REMARK 465 PRO B 343 REMARK 465 GLU B 344 REMARK 465 ASP B 345 REMARK 465 LEU B 346 REMARK 465 ARG B 433 REMARK 465 SER B 434 REMARK 465 VAL B 435 REMARK 465 GLY B 436 REMARK 465 VAL B 437 REMARK 465 ALA B 438 REMARK 465 GLY B 439 REMARK 465 ASP B 440 REMARK 465 GLU B 441 REMARK 465 ARG B 442 REMARK 465 LYS B 443 REMARK 465 TYR B 444 REMARK 465 GLU C 323 REMARK 465 SER C 324 REMARK 465 ALA C 325 REMARK 465 GLY C 326 REMARK 465 GLY C 327 REMARK 465 HIS C 328 REMARK 465 GLY C 329 REMARK 465 ALA C 330 REMARK 465 ALA C 331 REMARK 465 LYS C 332 REMARK 465 ILE C 333 REMARK 465 LYS C 334 REMARK 465 SER C 335 REMARK 465 HIS C 336 REMARK 465 HIS C 337 REMARK 465 ASN C 338 REMARK 465 VAL C 339 REMARK 465 GLY C 340 REMARK 465 GLY C 341 REMARK 465 LEU C 342 REMARK 465 PRO C 343 REMARK 465 GLU C 344 REMARK 465 ASP C 345 REMARK 465 LEU C 346 REMARK 465 ARG C 433 REMARK 465 SER C 434 REMARK 465 VAL C 435 REMARK 465 GLY C 436 REMARK 465 VAL C 437 REMARK 465 ALA C 438 REMARK 465 GLY C 439 REMARK 465 ASP C 440 REMARK 465 GLU C 441 REMARK 465 ARG C 442 REMARK 465 LYS C 443 REMARK 465 TYR C 444 REMARK 465 GLU D 323 REMARK 465 SER D 324 REMARK 465 ALA D 325 REMARK 465 GLY D 326 REMARK 465 GLY D 327 REMARK 465 HIS D 328 REMARK 465 GLY D 329 REMARK 465 ALA D 330 REMARK 465 ALA D 331 REMARK 465 LYS D 332 REMARK 465 ILE D 333 REMARK 465 LYS D 334 REMARK 465 SER D 335 REMARK 465 HIS D 336 REMARK 465 HIS D 337 REMARK 465 ASN D 338 REMARK 465 VAL D 339 REMARK 465 GLY D 340 REMARK 465 GLY D 341 REMARK 465 LEU D 342 REMARK 465 PRO D 343 REMARK 465 GLU D 344 REMARK 465 ASP D 345 REMARK 465 LEU D 346 REMARK 465 GLU D 347 REMARK 465 SER D 434 REMARK 465 VAL D 435 REMARK 465 GLY D 436 REMARK 465 VAL D 437 REMARK 465 ALA D 438 REMARK 465 GLY D 439 REMARK 465 ASP D 440 REMARK 465 GLU D 441 REMARK 465 ARG D 442 REMARK 465 LYS D 443 REMARK 465 TYR D 444 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 457 O - C - N ANGL. DEV. = -16.1 DEGREES REMARK 500 PHE A 458 C - N - CA ANGL. DEV. = 18.9 DEGREES REMARK 500 PHE A 458 O - C - N ANGL. DEV. = 10.8 DEGREES REMARK 500 PHE B 458 C - N - CA ANGL. DEV. = 16.1 DEGREES REMARK 500 GLU C 456 O - C - N ANGL. DEV. = -13.7 DEGREES REMARK 500 ASP C 457 C - N - CA ANGL. DEV. = 15.4 DEGREES REMARK 500 GLY D 315 O - C - N ANGL. DEV. = -15.0 DEGREES REMARK 500 GLU D 456 CA - C - N ANGL. DEV. = 14.8 DEGREES REMARK 500 GLU D 456 O - C - N ANGL. DEV. = -16.2 DEGREES REMARK 500 ASP D 457 C - N - CA ANGL. DEV. = 16.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 34 140.08 -36.45 REMARK 500 CYS A 78 -100.08 54.92 REMARK 500 ALA A 98 88.64 -64.57 REMARK 500 ASP A 128 -166.39 56.42 REMARK 500 THR A 170 76.87 -119.30 REMARK 500 TRP A 190 75.59 -69.36 REMARK 500 ASP B 32 40.77 -93.08 REMARK 500 SER B 49 -178.49 -69.15 REMARK 500 CYS B 78 -113.00 53.47 REMARK 500 ALA B 98 97.87 -55.47 REMARK 500 ASP B 128 -164.35 69.26 REMARK 500 ALA B 129 138.08 -179.87 REMARK 500 THR B 170 73.83 -118.75 REMARK 500 ARG B 188 77.64 -100.26 REMARK 500 PHE B 458 20.98 42.73 REMARK 500 ALA B 461 142.40 -170.11 REMARK 500 PHE C 68 11.02 -65.01 REMARK 500 CYS C 78 -106.34 50.50 REMARK 500 HIS C 108 95.98 -160.12 REMARK 500 ASP C 128 -158.14 57.03 REMARK 500 PHE C 348 -175.70 -67.86 REMARK 500 ASP C 457 -5.80 -157.10 REMARK 500 PRO D 30 156.07 -43.29 REMARK 500 ARG D 42 53.65 35.25 REMARK 500 ARG D 66 34.64 -81.96 REMARK 500 CYS D 78 -101.63 50.05 REMARK 500 ALA D 98 92.85 -62.47 REMARK 500 HIS D 108 116.78 -160.70 REMARK 500 ASP D 128 -157.04 57.34 REMARK 500 ARG D 304 -69.16 -93.93 REMARK 500 GLU D 305 -9.10 -53.51 REMARK 500 LEU D 391 93.38 -64.19 REMARK 500 ASP D 457 -0.60 -141.48 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ILE A 322 GLU A 323 143.71 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 ASP A 457 -18.61 REMARK 500 ARG B 23 -10.32 REMARK 500 ALA B 85 -10.11 REMARK 500 ASP B 128 -12.27 REMARK 500 ALA B 129 12.14 REMARK 500 MSE B 459 -12.19 REMARK 500 ASP C 128 -13.20 REMARK 500 PHE C 458 -13.21 REMARK 500 ARG D 23 -11.59 REMARK 500 ARG D 94 10.76 REMARK 500 ALA D 129 12.89 REMARK 500 GLY D 315 -26.97 REMARK 500 PHE D 458 -15.90 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE XMP A 701 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE XMP B 702 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE XMP C 703 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE XMP D 704 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2YWB RELATED DB: PDB REMARK 900 GMP SYNTHETASE FROM THERMUS THERMOPHILUS REMARK 900 RELATED ID: TTK003000113.2 RELATED DB: TARGETDB DBREF 2YWC A 1 503 UNP Q5SI28 GUAA_THET8 1 503 DBREF 2YWC B 1 503 UNP Q5SI28 GUAA_THET8 1 503 DBREF 2YWC C 1 503 UNP Q5SI28 GUAA_THET8 1 503 DBREF 2YWC D 1 503 UNP Q5SI28 GUAA_THET8 1 503 SEQRES 1 A 503 MSE VAL LEU VAL LEU ASP PHE GLY SER GLN TYR THR ARG SEQRES 2 A 503 LEU ILE ALA ARG ARG LEU ARG GLU LEU ARG ALA PHE SER SEQRES 3 A 503 LEU ILE LEU PRO GLY ASP ALA PRO LEU GLU GLU VAL LEU SEQRES 4 A 503 LYS HIS ARG PRO GLN ALA LEU ILE LEU SER GLY GLY PRO SEQRES 5 A 503 ARG SER VAL PHE ASP PRO ASP ALA PRO ARG PRO ASP PRO SEQRES 6 A 503 ARG LEU PHE SER SER GLY LEU PRO LEU LEU GLY ILE CYS SEQRES 7 A 503 TYR GLY MSE GLN LEU LEU ALA GLN GLU LEU GLY GLY ARG SEQRES 8 A 503 VAL GLU ARG ALA GLY ARG ALA GLU TYR GLY LYS ALA LEU SEQRES 9 A 503 LEU THR ARG HIS GLU GLY PRO LEU PHE ARG GLY LEU GLU SEQRES 10 A 503 GLY GLU VAL GLN VAL TRP MSE SER HIS GLN ASP ALA VAL SEQRES 11 A 503 THR ALA PRO PRO PRO GLY TRP ARG VAL VAL ALA GLU THR SEQRES 12 A 503 GLU GLU ASN PRO VAL ALA ALA ILE ALA SER PRO ASP GLY SEQRES 13 A 503 ARG ALA TYR GLY VAL GLN PHE HIS PRO GLU VAL ALA HIS SEQRES 14 A 503 THR PRO LYS GLY MSE GLN ILE LEU GLU ASN PHE LEU GLU SEQRES 15 A 503 LEU ALA GLY VAL LYS ARG ASP TRP THR PRO GLU HIS VAL SEQRES 16 A 503 LEU GLU GLU LEU LEU ARG GLU VAL ARG GLU ARG ALA GLY SEQRES 17 A 503 LYS ASP ARG VAL LEU LEU ALA VAL SER GLY GLY VAL ASP SEQRES 18 A 503 SER SER THR LEU ALA LEU LEU LEU ALA LYS ALA GLY VAL SEQRES 19 A 503 ASP HIS LEU ALA VAL PHE VAL ASP HIS GLY LEU LEU ARG SEQRES 20 A 503 LEU GLY GLU ARG GLU GLU VAL GLU GLY ALA LEU ARG ALA SEQRES 21 A 503 LEU GLY VAL ASN LEU LEU VAL VAL ASP ALA LYS GLU ARG SEQRES 22 A 503 PHE LEU LYS ALA LEU LYS GLY VAL GLU ASP PRO GLU GLU SEQRES 23 A 503 LYS ARG LYS ILE ILE GLY ARG GLU PHE VAL ALA ALA PHE SEQRES 24 A 503 SER GLN VAL ALA ARG GLU ARG GLY PRO PHE ARG PHE LEU SEQRES 25 A 503 ALA GLN GLY THR LEU TYR PRO ASP VAL ILE GLU SER ALA SEQRES 26 A 503 GLY GLY HIS GLY ALA ALA LYS ILE LYS SER HIS HIS ASN SEQRES 27 A 503 VAL GLY GLY LEU PRO GLU ASP LEU GLU PHE GLU LEU LEU SEQRES 28 A 503 GLU PRO PHE ARG LEU LEU PHE LYS ASP GLU VAL ARG GLU SEQRES 29 A 503 LEU ALA LEU LEU LEU GLY LEU PRO ASP THR LEU ARG LEU SEQRES 30 A 503 ARG HIS PRO PHE PRO GLY PRO GLY LEU ALA VAL ARG VAL SEQRES 31 A 503 LEU GLY GLU VAL THR GLU GLU ARG LEU GLU ILE LEU ARG SEQRES 32 A 503 ARG ALA ASP ASP ILE PHE THR SER LEU LEU ARG GLU TRP SEQRES 33 A 503 GLY LEU TYR GLU LYS VAL ALA GLN ALA LEU ALA VAL LEU SEQRES 34 A 503 THR PRO VAL ARG SER VAL GLY VAL ALA GLY ASP GLU ARG SEQRES 35 A 503 LYS TYR GLY TYR VAL LEU ALA LEU ARG ALA VAL THR THR SEQRES 36 A 503 GLU ASP PHE MSE THR ALA ASP TRP ALA ARG LEU PRO LEU SEQRES 37 A 503 GLU PHE LEU ASP GLU ALA ALA ARG ARG ILE THR ARG ARG SEQRES 38 A 503 VAL PRO GLU ILE GLY ARG VAL VAL TYR ASP LEU THR SER SEQRES 39 A 503 LYS PRO PRO ALA THR ILE GLU TRP GLU SEQRES 1 B 503 MSE VAL LEU VAL LEU ASP PHE GLY SER GLN TYR THR ARG SEQRES 2 B 503 LEU ILE ALA ARG ARG LEU ARG GLU LEU ARG ALA PHE SER SEQRES 3 B 503 LEU ILE LEU PRO GLY ASP ALA PRO LEU GLU GLU VAL LEU SEQRES 4 B 503 LYS HIS ARG PRO GLN ALA LEU ILE LEU SER GLY GLY PRO SEQRES 5 B 503 ARG SER VAL PHE ASP PRO ASP ALA PRO ARG PRO ASP PRO SEQRES 6 B 503 ARG LEU PHE SER SER GLY LEU PRO LEU LEU GLY ILE CYS SEQRES 7 B 503 TYR GLY MSE GLN LEU LEU ALA GLN GLU LEU GLY GLY ARG SEQRES 8 B 503 VAL GLU ARG ALA GLY ARG ALA GLU TYR GLY LYS ALA LEU SEQRES 9 B 503 LEU THR ARG HIS GLU GLY PRO LEU PHE ARG GLY LEU GLU SEQRES 10 B 503 GLY GLU VAL GLN VAL TRP MSE SER HIS GLN ASP ALA VAL SEQRES 11 B 503 THR ALA PRO PRO PRO GLY TRP ARG VAL VAL ALA GLU THR SEQRES 12 B 503 GLU GLU ASN PRO VAL ALA ALA ILE ALA SER PRO ASP GLY SEQRES 13 B 503 ARG ALA TYR GLY VAL GLN PHE HIS PRO GLU VAL ALA HIS SEQRES 14 B 503 THR PRO LYS GLY MSE GLN ILE LEU GLU ASN PHE LEU GLU SEQRES 15 B 503 LEU ALA GLY VAL LYS ARG ASP TRP THR PRO GLU HIS VAL SEQRES 16 B 503 LEU GLU GLU LEU LEU ARG GLU VAL ARG GLU ARG ALA GLY SEQRES 17 B 503 LYS ASP ARG VAL LEU LEU ALA VAL SER GLY GLY VAL ASP SEQRES 18 B 503 SER SER THR LEU ALA LEU LEU LEU ALA LYS ALA GLY VAL SEQRES 19 B 503 ASP HIS LEU ALA VAL PHE VAL ASP HIS GLY LEU LEU ARG SEQRES 20 B 503 LEU GLY GLU ARG GLU GLU VAL GLU GLY ALA LEU ARG ALA SEQRES 21 B 503 LEU GLY VAL ASN LEU LEU VAL VAL ASP ALA LYS GLU ARG SEQRES 22 B 503 PHE LEU LYS ALA LEU LYS GLY VAL GLU ASP PRO GLU GLU SEQRES 23 B 503 LYS ARG LYS ILE ILE GLY ARG GLU PHE VAL ALA ALA PHE SEQRES 24 B 503 SER GLN VAL ALA ARG GLU ARG GLY PRO PHE ARG PHE LEU SEQRES 25 B 503 ALA GLN GLY THR LEU TYR PRO ASP VAL ILE GLU SER ALA SEQRES 26 B 503 GLY GLY HIS GLY ALA ALA LYS ILE LYS SER HIS HIS ASN SEQRES 27 B 503 VAL GLY GLY LEU PRO GLU ASP LEU GLU PHE GLU LEU LEU SEQRES 28 B 503 GLU PRO PHE ARG LEU LEU PHE LYS ASP GLU VAL ARG GLU SEQRES 29 B 503 LEU ALA LEU LEU LEU GLY LEU PRO ASP THR LEU ARG LEU SEQRES 30 B 503 ARG HIS PRO PHE PRO GLY PRO GLY LEU ALA VAL ARG VAL SEQRES 31 B 503 LEU GLY GLU VAL THR GLU GLU ARG LEU GLU ILE LEU ARG SEQRES 32 B 503 ARG ALA ASP ASP ILE PHE THR SER LEU LEU ARG GLU TRP SEQRES 33 B 503 GLY LEU TYR GLU LYS VAL ALA GLN ALA LEU ALA VAL LEU SEQRES 34 B 503 THR PRO VAL ARG SER VAL GLY VAL ALA GLY ASP GLU ARG SEQRES 35 B 503 LYS TYR GLY TYR VAL LEU ALA LEU ARG ALA VAL THR THR SEQRES 36 B 503 GLU ASP PHE MSE THR ALA ASP TRP ALA ARG LEU PRO LEU SEQRES 37 B 503 GLU PHE LEU ASP GLU ALA ALA ARG ARG ILE THR ARG ARG SEQRES 38 B 503 VAL PRO GLU ILE GLY ARG VAL VAL TYR ASP LEU THR SER SEQRES 39 B 503 LYS PRO PRO ALA THR ILE GLU TRP GLU SEQRES 1 C 503 MSE VAL LEU VAL LEU ASP PHE GLY SER GLN TYR THR ARG SEQRES 2 C 503 LEU ILE ALA ARG ARG LEU ARG GLU LEU ARG ALA PHE SER SEQRES 3 C 503 LEU ILE LEU PRO GLY ASP ALA PRO LEU GLU GLU VAL LEU SEQRES 4 C 503 LYS HIS ARG PRO GLN ALA LEU ILE LEU SER GLY GLY PRO SEQRES 5 C 503 ARG SER VAL PHE ASP PRO ASP ALA PRO ARG PRO ASP PRO SEQRES 6 C 503 ARG LEU PHE SER SER GLY LEU PRO LEU LEU GLY ILE CYS SEQRES 7 C 503 TYR GLY MSE GLN LEU LEU ALA GLN GLU LEU GLY GLY ARG SEQRES 8 C 503 VAL GLU ARG ALA GLY ARG ALA GLU TYR GLY LYS ALA LEU SEQRES 9 C 503 LEU THR ARG HIS GLU GLY PRO LEU PHE ARG GLY LEU GLU SEQRES 10 C 503 GLY GLU VAL GLN VAL TRP MSE SER HIS GLN ASP ALA VAL SEQRES 11 C 503 THR ALA PRO PRO PRO GLY TRP ARG VAL VAL ALA GLU THR SEQRES 12 C 503 GLU GLU ASN PRO VAL ALA ALA ILE ALA SER PRO ASP GLY SEQRES 13 C 503 ARG ALA TYR GLY VAL GLN PHE HIS PRO GLU VAL ALA HIS SEQRES 14 C 503 THR PRO LYS GLY MSE GLN ILE LEU GLU ASN PHE LEU GLU SEQRES 15 C 503 LEU ALA GLY VAL LYS ARG ASP TRP THR PRO GLU HIS VAL SEQRES 16 C 503 LEU GLU GLU LEU LEU ARG GLU VAL ARG GLU ARG ALA GLY SEQRES 17 C 503 LYS ASP ARG VAL LEU LEU ALA VAL SER GLY GLY VAL ASP SEQRES 18 C 503 SER SER THR LEU ALA LEU LEU LEU ALA LYS ALA GLY VAL SEQRES 19 C 503 ASP HIS LEU ALA VAL PHE VAL ASP HIS GLY LEU LEU ARG SEQRES 20 C 503 LEU GLY GLU ARG GLU GLU VAL GLU GLY ALA LEU ARG ALA SEQRES 21 C 503 LEU GLY VAL ASN LEU LEU VAL VAL ASP ALA LYS GLU ARG SEQRES 22 C 503 PHE LEU LYS ALA LEU LYS GLY VAL GLU ASP PRO GLU GLU SEQRES 23 C 503 LYS ARG LYS ILE ILE GLY ARG GLU PHE VAL ALA ALA PHE SEQRES 24 C 503 SER GLN VAL ALA ARG GLU ARG GLY PRO PHE ARG PHE LEU SEQRES 25 C 503 ALA GLN GLY THR LEU TYR PRO ASP VAL ILE GLU SER ALA SEQRES 26 C 503 GLY GLY HIS GLY ALA ALA LYS ILE LYS SER HIS HIS ASN SEQRES 27 C 503 VAL GLY GLY LEU PRO GLU ASP LEU GLU PHE GLU LEU LEU SEQRES 28 C 503 GLU PRO PHE ARG LEU LEU PHE LYS ASP GLU VAL ARG GLU SEQRES 29 C 503 LEU ALA LEU LEU LEU GLY LEU PRO ASP THR LEU ARG LEU SEQRES 30 C 503 ARG HIS PRO PHE PRO GLY PRO GLY LEU ALA VAL ARG VAL SEQRES 31 C 503 LEU GLY GLU VAL THR GLU GLU ARG LEU GLU ILE LEU ARG SEQRES 32 C 503 ARG ALA ASP ASP ILE PHE THR SER LEU LEU ARG GLU TRP SEQRES 33 C 503 GLY LEU TYR GLU LYS VAL ALA GLN ALA LEU ALA VAL LEU SEQRES 34 C 503 THR PRO VAL ARG SER VAL GLY VAL ALA GLY ASP GLU ARG SEQRES 35 C 503 LYS TYR GLY TYR VAL LEU ALA LEU ARG ALA VAL THR THR SEQRES 36 C 503 GLU ASP PHE MSE THR ALA ASP TRP ALA ARG LEU PRO LEU SEQRES 37 C 503 GLU PHE LEU ASP GLU ALA ALA ARG ARG ILE THR ARG ARG SEQRES 38 C 503 VAL PRO GLU ILE GLY ARG VAL VAL TYR ASP LEU THR SER SEQRES 39 C 503 LYS PRO PRO ALA THR ILE GLU TRP GLU SEQRES 1 D 503 MSE VAL LEU VAL LEU ASP PHE GLY SER GLN TYR THR ARG SEQRES 2 D 503 LEU ILE ALA ARG ARG LEU ARG GLU LEU ARG ALA PHE SER SEQRES 3 D 503 LEU ILE LEU PRO GLY ASP ALA PRO LEU GLU GLU VAL LEU SEQRES 4 D 503 LYS HIS ARG PRO GLN ALA LEU ILE LEU SER GLY GLY PRO SEQRES 5 D 503 ARG SER VAL PHE ASP PRO ASP ALA PRO ARG PRO ASP PRO SEQRES 6 D 503 ARG LEU PHE SER SER GLY LEU PRO LEU LEU GLY ILE CYS SEQRES 7 D 503 TYR GLY MSE GLN LEU LEU ALA GLN GLU LEU GLY GLY ARG SEQRES 8 D 503 VAL GLU ARG ALA GLY ARG ALA GLU TYR GLY LYS ALA LEU SEQRES 9 D 503 LEU THR ARG HIS GLU GLY PRO LEU PHE ARG GLY LEU GLU SEQRES 10 D 503 GLY GLU VAL GLN VAL TRP MSE SER HIS GLN ASP ALA VAL SEQRES 11 D 503 THR ALA PRO PRO PRO GLY TRP ARG VAL VAL ALA GLU THR SEQRES 12 D 503 GLU GLU ASN PRO VAL ALA ALA ILE ALA SER PRO ASP GLY SEQRES 13 D 503 ARG ALA TYR GLY VAL GLN PHE HIS PRO GLU VAL ALA HIS SEQRES 14 D 503 THR PRO LYS GLY MSE GLN ILE LEU GLU ASN PHE LEU GLU SEQRES 15 D 503 LEU ALA GLY VAL LYS ARG ASP TRP THR PRO GLU HIS VAL SEQRES 16 D 503 LEU GLU GLU LEU LEU ARG GLU VAL ARG GLU ARG ALA GLY SEQRES 17 D 503 LYS ASP ARG VAL LEU LEU ALA VAL SER GLY GLY VAL ASP SEQRES 18 D 503 SER SER THR LEU ALA LEU LEU LEU ALA LYS ALA GLY VAL SEQRES 19 D 503 ASP HIS LEU ALA VAL PHE VAL ASP HIS GLY LEU LEU ARG SEQRES 20 D 503 LEU GLY GLU ARG GLU GLU VAL GLU GLY ALA LEU ARG ALA SEQRES 21 D 503 LEU GLY VAL ASN LEU LEU VAL VAL ASP ALA LYS GLU ARG SEQRES 22 D 503 PHE LEU LYS ALA LEU LYS GLY VAL GLU ASP PRO GLU GLU SEQRES 23 D 503 LYS ARG LYS ILE ILE GLY ARG GLU PHE VAL ALA ALA PHE SEQRES 24 D 503 SER GLN VAL ALA ARG GLU ARG GLY PRO PHE ARG PHE LEU SEQRES 25 D 503 ALA GLN GLY THR LEU TYR PRO ASP VAL ILE GLU SER ALA SEQRES 26 D 503 GLY GLY HIS GLY ALA ALA LYS ILE LYS SER HIS HIS ASN SEQRES 27 D 503 VAL GLY GLY LEU PRO GLU ASP LEU GLU PHE GLU LEU LEU SEQRES 28 D 503 GLU PRO PHE ARG LEU LEU PHE LYS ASP GLU VAL ARG GLU SEQRES 29 D 503 LEU ALA LEU LEU LEU GLY LEU PRO ASP THR LEU ARG LEU SEQRES 30 D 503 ARG HIS PRO PHE PRO GLY PRO GLY LEU ALA VAL ARG VAL SEQRES 31 D 503 LEU GLY GLU VAL THR GLU GLU ARG LEU GLU ILE LEU ARG SEQRES 32 D 503 ARG ALA ASP ASP ILE PHE THR SER LEU LEU ARG GLU TRP SEQRES 33 D 503 GLY LEU TYR GLU LYS VAL ALA GLN ALA LEU ALA VAL LEU SEQRES 34 D 503 THR PRO VAL ARG SER VAL GLY VAL ALA GLY ASP GLU ARG SEQRES 35 D 503 LYS TYR GLY TYR VAL LEU ALA LEU ARG ALA VAL THR THR SEQRES 36 D 503 GLU ASP PHE MSE THR ALA ASP TRP ALA ARG LEU PRO LEU SEQRES 37 D 503 GLU PHE LEU ASP GLU ALA ALA ARG ARG ILE THR ARG ARG SEQRES 38 D 503 VAL PRO GLU ILE GLY ARG VAL VAL TYR ASP LEU THR SER SEQRES 39 D 503 LYS PRO PRO ALA THR ILE GLU TRP GLU MODRES 2YWC MSE A 1 MET SELENOMETHIONINE MODRES 2YWC MSE A 81 MET SELENOMETHIONINE MODRES 2YWC MSE A 124 MET SELENOMETHIONINE MODRES 2YWC MSE A 174 MET SELENOMETHIONINE MODRES 2YWC MSE A 459 MET SELENOMETHIONINE MODRES 2YWC MSE B 1 MET SELENOMETHIONINE MODRES 2YWC MSE B 81 MET SELENOMETHIONINE MODRES 2YWC MSE B 124 MET SELENOMETHIONINE MODRES 2YWC MSE B 174 MET SELENOMETHIONINE MODRES 2YWC MSE B 459 MET SELENOMETHIONINE MODRES 2YWC MSE C 1 MET SELENOMETHIONINE MODRES 2YWC MSE C 81 MET SELENOMETHIONINE MODRES 2YWC MSE C 124 MET SELENOMETHIONINE MODRES 2YWC MSE C 174 MET SELENOMETHIONINE MODRES 2YWC MSE C 459 MET SELENOMETHIONINE MODRES 2YWC MSE D 1 MET SELENOMETHIONINE MODRES 2YWC MSE D 81 MET SELENOMETHIONINE MODRES 2YWC MSE D 124 MET SELENOMETHIONINE MODRES 2YWC MSE D 174 MET SELENOMETHIONINE MODRES 2YWC MSE D 459 MET SELENOMETHIONINE HET MSE A 1 8 HET MSE A 81 8 HET MSE A 124 8 HET MSE A 174 8 HET MSE A 459 8 HET MSE B 1 8 HET MSE B 81 8 HET MSE B 124 8 HET MSE B 174 8 HET MSE B 459 8 HET MSE C 1 8 HET MSE C 81 8 HET MSE C 124 8 HET MSE C 174 8 HET MSE C 459 8 HET MSE D 1 8 HET MSE D 81 8 HET MSE D 124 8 HET MSE D 174 8 HET MSE D 459 8 HET XMP A 701 24 HET XMP B 702 24 HET XMP C 703 24 HET XMP D 704 24 HETNAM MSE SELENOMETHIONINE HETNAM XMP XANTHOSINE-5'-MONOPHOSPHATE HETSYN XMP 5-MONOPHOSPHATE-9-BETA-D-RIBOFURANOSYL XANTHINE FORMUL 1 MSE 20(C5 H11 N O2 SE) FORMUL 5 XMP 4(C10 H14 N4 O9 P 1+) FORMUL 9 HOH *306(H2 O) HELIX 1 1 TYR A 11 GLU A 21 1 11 HELIX 2 2 PRO A 34 LYS A 40 1 7 HELIX 3 3 ASP A 64 SER A 70 5 7 HELIX 4 4 CYS A 78 GLU A 87 1 10 HELIX 5 5 GLY A 110 ARG A 114 5 5 HELIX 6 6 LYS A 172 ALA A 184 1 13 HELIX 7 7 THR A 191 GLY A 208 1 18 HELIX 8 8 GLY A 219 GLY A 233 1 15 HELIX 9 9 GLY A 249 GLY A 262 1 14 HELIX 10 10 ALA A 270 LYS A 279 1 10 HELIX 11 11 ASP A 283 GLY A 307 1 25 HELIX 12 12 LEU A 317 ILE A 322 1 6 HELIX 13 13 PHE A 358 LEU A 369 1 12 HELIX 14 14 PRO A 372 LEU A 377 1 6 HELIX 15 15 PRO A 384 VAL A 390 5 7 HELIX 16 16 THR A 395 TRP A 416 1 22 HELIX 17 17 LEU A 418 VAL A 422 5 5 HELIX 18 18 PRO A 467 VAL A 482 1 16 HELIX 19 19 TYR B 11 LEU B 22 1 12 HELIX 20 20 PRO B 34 LYS B 40 1 7 HELIX 21 21 ASP B 64 SER B 70 5 7 HELIX 22 22 CYS B 78 GLU B 87 1 10 HELIX 23 23 GLY B 110 ARG B 114 5 5 HELIX 24 24 LYS B 172 GLY B 185 1 14 HELIX 25 25 THR B 191 GLY B 208 1 18 HELIX 26 26 GLY B 219 ALA B 232 1 14 HELIX 27 27 GLY B 249 GLY B 262 1 14 HELIX 28 28 ALA B 270 LEU B 278 1 9 HELIX 29 29 ASP B 283 ARG B 306 1 24 HELIX 30 30 LEU B 317 ILE B 322 1 6 HELIX 31 31 PHE B 358 LEU B 369 1 12 HELIX 32 32 PRO B 372 LEU B 377 1 6 HELIX 33 33 PRO B 384 VAL B 390 5 7 HELIX 34 34 THR B 395 TRP B 416 1 22 HELIX 35 35 LEU B 418 VAL B 422 5 5 HELIX 36 36 PRO B 467 VAL B 482 1 16 HELIX 37 37 TYR C 11 LEU C 22 1 12 HELIX 38 38 PRO C 34 LYS C 40 1 7 HELIX 39 39 ARG C 66 SER C 70 5 5 HELIX 40 40 CYS C 78 GLY C 89 1 12 HELIX 41 41 GLY C 110 ARG C 114 5 5 HELIX 42 42 LYS C 172 ALA C 184 1 13 HELIX 43 43 THR C 191 GLY C 208 1 18 HELIX 44 44 GLY C 219 ALA C 232 1 14 HELIX 45 45 GLY C 249 LEU C 261 1 13 HELIX 46 46 ALA C 270 LYS C 279 1 10 HELIX 47 47 ASP C 283 ARG C 306 1 24 HELIX 48 48 LEU C 317 ILE C 322 1 6 HELIX 49 49 PHE C 358 LEU C 369 1 12 HELIX 50 50 PRO C 372 LEU C 377 1 6 HELIX 51 51 PRO C 384 VAL C 390 5 7 HELIX 52 52 THR C 395 TRP C 416 1 22 HELIX 53 53 LEU C 418 VAL C 422 5 5 HELIX 54 54 PRO C 467 VAL C 482 1 16 HELIX 55 55 TYR D 11 GLU D 21 1 11 HELIX 56 56 PRO D 34 LYS D 40 1 7 HELIX 57 57 ASP D 64 PHE D 68 5 5 HELIX 58 58 GLY D 80 GLU D 87 1 8 HELIX 59 59 GLY D 110 ARG D 114 5 5 HELIX 60 60 LYS D 172 ALA D 184 1 13 HELIX 61 61 THR D 191 GLY D 208 1 18 HELIX 62 62 GLY D 219 GLY D 233 1 15 HELIX 63 63 GLY D 249 LEU D 261 1 13 HELIX 64 64 ALA D 270 LYS D 279 1 10 HELIX 65 65 ASP D 283 ARG D 306 1 24 HELIX 66 66 PHE D 358 LEU D 369 1 12 HELIX 67 67 PRO D 372 LEU D 377 1 6 HELIX 68 68 PRO D 384 VAL D 390 5 7 HELIX 69 69 THR D 395 TRP D 416 1 22 HELIX 70 70 LEU D 418 VAL D 422 5 5 HELIX 71 71 PRO D 467 VAL D 482 1 16 SHEET 1 A 8 SER A 26 PRO A 30 0 SHEET 2 A 8 VAL A 2 ASP A 6 1 N VAL A 4 O LEU A 27 SHEET 3 A 8 ALA A 45 LEU A 48 1 O ILE A 47 N LEU A 5 SHEET 4 A 8 LEU A 74 ILE A 77 1 O LEU A 75 N LEU A 48 SHEET 5 A 8 ALA A 158 VAL A 161 1 O VAL A 161 N GLY A 76 SHEET 6 A 8 ALA A 150 ALA A 152 -1 N ILE A 151 O GLY A 160 SHEET 7 A 8 ARG A 138 GLU A 142 -1 N ARG A 138 O ALA A 152 SHEET 8 A 8 ARG A 107 HIS A 108 -1 N ARG A 107 O GLU A 142 SHEET 1 B 2 ARG A 91 GLU A 93 0 SHEET 2 B 2 ALA A 129 ALA A 132 -1 O THR A 131 N ARG A 91 SHEET 1 C 2 TYR A 100 LEU A 104 0 SHEET 2 C 2 GLN A 121 SER A 125 -1 O VAL A 122 N ALA A 103 SHEET 1 D 5 LEU A 265 ASP A 269 0 SHEET 2 D 5 ASP A 235 ASP A 242 1 N PHE A 240 O LEU A 266 SHEET 3 D 5 ARG A 211 VAL A 216 1 N VAL A 216 O VAL A 239 SHEET 4 D 5 PHE A 311 ALA A 313 1 O PHE A 311 N LEU A 213 SHEET 5 D 5 GLU A 349 LEU A 351 1 O GLU A 349 N LEU A 312 SHEET 1 E 6 GLN A 424 THR A 430 0 SHEET 2 E 6 TYR A 446 THR A 454 -1 O ARG A 451 N LEU A 426 SHEET 3 E 6 ILE A 485 ASP A 491 1 O VAL A 489 N LEU A 450 SHEET 4 E 6 ILE B 485 ASP B 491 -1 O TYR B 490 N TYR A 490 SHEET 5 E 6 TYR B 446 THR B 454 1 N LEU B 450 O VAL B 489 SHEET 6 E 6 GLN B 424 THR B 430 -1 N LEU B 426 O ARG B 451 SHEET 1 F 6 ASP A 462 TRP A 463 0 SHEET 2 F 6 TYR A 446 THR A 454 -1 N THR A 454 O ASP A 462 SHEET 3 F 6 ILE A 485 ASP A 491 1 O VAL A 489 N LEU A 450 SHEET 4 F 6 ILE B 485 ASP B 491 -1 O TYR B 490 N TYR A 490 SHEET 5 F 6 TYR B 446 THR B 454 1 N LEU B 450 O VAL B 489 SHEET 6 F 6 ASP B 462 TRP B 463 -1 O ASP B 462 N THR B 454 SHEET 1 G 9 SER B 26 PRO B 30 0 SHEET 2 G 9 VAL B 2 ASP B 6 1 N ASP B 6 O LEU B 29 SHEET 3 G 9 ALA B 45 LEU B 48 1 O ILE B 47 N LEU B 5 SHEET 4 G 9 LEU B 74 ILE B 77 1 O LEU B 75 N LEU B 48 SHEET 5 G 9 ALA B 158 VAL B 161 1 O TYR B 159 N GLY B 76 SHEET 6 G 9 ALA B 150 ALA B 152 -1 N ILE B 151 O GLY B 160 SHEET 7 G 9 ARG B 138 THR B 143 -1 N ARG B 138 O ALA B 152 SHEET 8 G 9 TYR B 100 HIS B 108 -1 N ARG B 107 O GLU B 142 SHEET 9 G 9 GLN B 121 SER B 125 -1 O MSE B 124 N GLY B 101 SHEET 1 H 2 ARG B 91 GLU B 93 0 SHEET 2 H 2 ALA B 129 ALA B 132 -1 O ALA B 132 N ARG B 91 SHEET 1 I 5 LEU B 265 ASP B 269 0 SHEET 2 I 5 HIS B 236 ASP B 242 1 N ALA B 238 O LEU B 266 SHEET 3 I 5 VAL B 212 VAL B 216 1 N LEU B 214 O VAL B 239 SHEET 4 I 5 PHE B 311 ALA B 313 1 O PHE B 311 N LEU B 213 SHEET 5 I 5 GLU B 349 LEU B 351 1 O GLU B 349 N LEU B 312 SHEET 1 J 9 SER C 26 PRO C 30 0 SHEET 2 J 9 VAL C 2 ASP C 6 1 N ASP C 6 O LEU C 29 SHEET 3 J 9 ALA C 45 LEU C 48 1 O ILE C 47 N LEU C 5 SHEET 4 J 9 LEU C 74 ILE C 77 1 O LEU C 75 N LEU C 48 SHEET 5 J 9 ALA C 158 VAL C 161 1 O TYR C 159 N GLY C 76 SHEET 6 J 9 ASN C 146 ALA C 152 -1 N ILE C 151 O GLY C 160 SHEET 7 J 9 ARG C 138 THR C 143 -1 N ALA C 141 O ALA C 149 SHEET 8 J 9 TYR C 100 HIS C 108 -1 N THR C 106 O GLU C 142 SHEET 9 J 9 GLN C 121 SER C 125 -1 O VAL C 122 N ALA C 103 SHEET 1 K 2 ARG C 91 GLU C 93 0 SHEET 2 K 2 ALA C 129 ALA C 132 -1 O ALA C 129 N GLU C 93 SHEET 1 L 5 LEU C 265 ASP C 269 0 SHEET 2 L 5 HIS C 236 ASP C 242 1 N ASP C 242 O VAL C 268 SHEET 3 L 5 VAL C 212 ALA C 215 1 N LEU C 214 O VAL C 239 SHEET 4 L 5 PHE C 311 ALA C 313 1 O PHE C 311 N LEU C 213 SHEET 5 L 5 GLU C 349 LEU C 351 1 O GLU C 349 N LEU C 312 SHEET 1 M 6 GLN C 424 THR C 430 0 SHEET 2 M 6 TYR C 446 THR C 454 -1 O VAL C 447 N THR C 430 SHEET 3 M 6 ILE C 485 ASP C 491 1 O VAL C 489 N LEU C 450 SHEET 4 M 6 ARG D 487 ASP D 491 -1 O TYR D 490 N TYR C 490 SHEET 5 M 6 TYR D 446 THR D 455 1 N LEU D 450 O VAL D 489 SHEET 6 M 6 GLN D 424 PRO D 431 -1 N LEU D 426 O ARG D 451 SHEET 1 N 6 ASP C 462 TRP C 463 0 SHEET 2 N 6 TYR C 446 THR C 454 -1 N THR C 454 O ASP C 462 SHEET 3 N 6 ILE C 485 ASP C 491 1 O VAL C 489 N LEU C 450 SHEET 4 N 6 ARG D 487 ASP D 491 -1 O TYR D 490 N TYR C 490 SHEET 5 N 6 TYR D 446 THR D 455 1 N LEU D 450 O VAL D 489 SHEET 6 N 6 ALA D 461 TRP D 463 -1 O ASP D 462 N THR D 454 SHEET 1 O 8 SER D 26 PRO D 30 0 SHEET 2 O 8 VAL D 2 ASP D 6 1 N VAL D 4 O LEU D 27 SHEET 3 O 8 LEU D 46 LEU D 48 1 O ILE D 47 N LEU D 5 SHEET 4 O 8 LEU D 74 ILE D 77 1 O ILE D 77 N LEU D 48 SHEET 5 O 8 ALA D 158 VAL D 161 1 O TYR D 159 N GLY D 76 SHEET 6 O 8 ALA D 150 ALA D 152 -1 N ILE D 151 O GLY D 160 SHEET 7 O 8 ARG D 138 GLU D 142 -1 N ARG D 138 O ALA D 152 SHEET 8 O 8 ARG D 107 HIS D 108 -1 N ARG D 107 O GLU D 142 SHEET 1 P 2 ARG D 91 GLU D 93 0 SHEET 2 P 2 ALA D 129 ALA D 132 -1 O THR D 131 N ARG D 91 SHEET 1 Q 2 TYR D 100 LEU D 104 0 SHEET 2 Q 2 GLN D 121 SER D 125 -1 O VAL D 122 N ALA D 103 SHEET 1 R 5 LEU D 265 ASP D 269 0 SHEET 2 R 5 HIS D 236 ASP D 242 1 N ALA D 238 O LEU D 266 SHEET 3 R 5 VAL D 212 ALA D 215 1 N LEU D 214 O VAL D 239 SHEET 4 R 5 PHE D 311 ALA D 313 1 O PHE D 311 N LEU D 213 SHEET 5 R 5 GLU D 349 LEU D 351 1 O GLU D 349 N LEU D 312 LINK C MSE A 1 N VAL A 2 1555 1555 1.33 LINK C GLY A 80 N MSE A 81 1555 1555 1.34 LINK C MSE A 81 N GLN A 82 1555 1555 1.33 LINK C TRP A 123 N MSE A 124 1555 1555 1.33 LINK C MSE A 124 N SER A 125 1555 1555 1.33 LINK C GLY A 173 N MSE A 174 1555 1555 1.33 LINK C MSE A 174 N GLN A 175 1555 1555 1.33 LINK C PHE A 458 N MSE A 459 1555 1555 1.33 LINK C MSE A 459 N THR A 460 1555 1555 1.34 LINK C MSE B 1 N VAL B 2 1555 1555 1.33 LINK C GLY B 80 N MSE B 81 1555 1555 1.33 LINK C MSE B 81 N GLN B 82 1555 1555 1.33 LINK C TRP B 123 N MSE B 124 1555 1555 1.33 LINK C MSE B 124 N SER B 125 1555 1555 1.33 LINK C GLY B 173 N MSE B 174 1555 1555 1.33 LINK C MSE B 174 N GLN B 175 1555 1555 1.33 LINK C PHE B 458 N MSE B 459 1555 1555 1.34 LINK C MSE B 459 N THR B 460 1555 1555 1.34 LINK C MSE C 1 N VAL C 2 1555 1555 1.33 LINK C GLY C 80 N MSE C 81 1555 1555 1.33 LINK C MSE C 81 N GLN C 82 1555 1555 1.33 LINK C TRP C 123 N MSE C 124 1555 1555 1.33 LINK C MSE C 124 N SER C 125 1555 1555 1.33 LINK C GLY C 173 N MSE C 174 1555 1555 1.33 LINK C MSE C 174 N GLN C 175 1555 1555 1.33 LINK C PHE C 458 N MSE C 459 1555 1555 1.33 LINK C MSE C 459 N THR C 460 1555 1555 1.32 LINK C MSE D 1 N VAL D 2 1555 1555 1.33 LINK C GLY D 80 N MSE D 81 1555 1555 1.34 LINK C MSE D 81 N GLN D 82 1555 1555 1.33 LINK C TRP D 123 N MSE D 124 1555 1555 1.32 LINK C MSE D 124 N SER D 125 1555 1555 1.33 LINK C GLY D 173 N MSE D 174 1555 1555 1.33 LINK C MSE D 174 N GLN D 175 1555 1555 1.33 LINK C PHE D 458 N MSE D 459 1555 1555 1.31 LINK C MSE D 459 N THR D 460 1555 1555 1.35 CISPEP 1 GLY A 307 PRO A 308 0 0.32 CISPEP 2 LYS A 495 PRO A 496 0 -0.21 CISPEP 3 PRO A 496 PRO A 497 0 0.41 CISPEP 4 GLY B 307 PRO B 308 0 -0.01 CISPEP 5 LYS B 495 PRO B 496 0 -0.34 CISPEP 6 PRO B 496 PRO B 497 0 0.14 CISPEP 7 GLY C 307 PRO C 308 0 0.44 CISPEP 8 LYS C 495 PRO C 496 0 -0.12 CISPEP 9 PRO C 496 PRO C 497 0 0.35 CISPEP 10 LYS D 495 PRO D 496 0 0.11 CISPEP 11 PRO D 496 PRO D 497 0 0.56 SITE 1 AC1 12 ARG A 288 PRO A 382 GLY A 383 PRO A 384 SITE 2 AC1 12 GLN A 424 LYS A 495 THR A 499 ILE A 500 SITE 3 AC1 12 GLU A 501 HOH A 773 HOH A 784 HOH A 807 SITE 1 AC2 11 ARG B 288 PRO B 382 GLY B 383 PRO B 384 SITE 2 AC2 11 GLN B 424 PHE B 458 LYS B 495 THR B 499 SITE 3 AC2 11 ILE B 500 GLU B 501 HOH B 748 SITE 1 AC3 10 ARG C 288 PRO C 382 GLY C 383 PRO C 384 SITE 2 AC3 10 GLN C 424 PHE C 458 LYS C 495 THR C 499 SITE 3 AC3 10 ILE C 500 GLU C 501 SITE 1 AC4 10 ARG D 288 PRO D 382 GLY D 383 PRO D 384 SITE 2 AC4 10 GLN D 424 PHE D 458 LYS D 495 THR D 499 SITE 3 AC4 10 ILE D 500 GLU D 501 CRYST1 142.580 115.213 159.348 90.00 93.21 90.00 C 1 2 1 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007014 0.000000 0.000394 0.00000 SCALE2 0.000000 0.008680 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006285 0.00000 HETATM 1 N MSE A 1 -37.191 4.439 79.519 1.00 60.06 N HETATM 2 CA MSE A 1 -35.947 5.240 79.321 1.00 59.86 C HETATM 3 C MSE A 1 -34.904 4.452 78.532 1.00 59.27 C HETATM 4 O MSE A 1 -34.320 3.493 79.044 1.00 59.14 O HETATM 5 CB MSE A 1 -35.349 5.646 80.673 1.00 56.30 C HETATM 6 CG MSE A 1 -34.253 6.723 80.603 1.00 58.40 C HETATM 7 SE MSE A 1 -32.742 6.284 79.703 1.00 57.85 SE HETATM 8 CE MSE A 1 -31.699 5.744 81.028 1.00 59.63 C