HEADER TRANSFERASE 23-APR-07 2YWR TITLE CRYSTAL STRUCTURE OF GAR TRANSFORMYLASE FROM AQUIFEX AEOLICUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHOSPHORIBOSYLGLYCINAMIDE FORMYLTRANSFERASE; COMPND 3 CHAIN: A; COMPND 4 EC: 2.1.2.2; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: AQUIFEX AEOLICUS; SOURCE 3 ORGANISM_TAXID: 63363; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PET-21A KEYWDS ROSSMANN FOLD, STRUCTURAL GENOMICS, NPPSFA, NATIONAL PROJECT ON KEYWDS 2 PROTEIN STRUCTURAL AND FUNCTIONAL ANALYSES, RIKEN STRUCTURAL KEYWDS 3 GENOMICS/PROTEOMICS INITIATIVE, RSGI, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR M.KANAGAWA,S.BABA,S.KURAMITSU,S.YOKOYAMA,G.KAWAI,G.SAMPEI,RIKEN AUTHOR 2 STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE (RSGI) REVDAT 5 15-NOV-23 2YWR 1 REMARK REVDAT 4 25-OCT-23 2YWR 1 REMARK LINK REVDAT 3 15-JAN-14 2YWR 1 JRNL VERSN REVDAT 2 24-FEB-09 2YWR 1 VERSN REVDAT 1 23-OCT-07 2YWR 0 JRNL AUTH G.SAMPEI,M.KANAGAWA,S.BABA,T.SHIMASAKI,H.TAKA,S.MITSUI, JRNL AUTH 2 S.FUJIWARA,Y.YANAGIDA,M.KUSANO,S.SUZUKI,K.TERAO,H.KAWAI, JRNL AUTH 3 Y.FUKAI,N.NAKAGAWA,A.EBIHARA,S.KURAMITSU,S.YOKOYAMA,G.KAWAI JRNL TITL STRUCTURES AND REACTION MECHANISMS OF THE TWO RELATED JRNL TITL 2 ENZYMES, PURN AND PURU. JRNL REF J.BIOCHEM. V. 154 569 2013 JRNL REFN ISSN 0021-924X JRNL PMID 24108189 JRNL DOI 10.1093/JB/MVT090 REMARK 2 REMARK 2 RESOLUTION. 1.77 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.77 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.40 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 216594.530 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 98.0 REMARK 3 NUMBER OF REFLECTIONS : 19134 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.204 REMARK 3 FREE R VALUE : 0.219 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.900 REMARK 3 FREE R VALUE TEST SET COUNT : 1888 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.005 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.77 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.88 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.50 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2740 REMARK 3 BIN R VALUE (WORKING SET) : 0.2460 REMARK 3 BIN FREE R VALUE : 0.2810 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 9.70 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 296 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.016 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1702 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 5 REMARK 3 SOLVENT ATOMS : 266 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 17.10 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.90 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.68000 REMARK 3 B22 (A**2) : -1.68000 REMARK 3 B33 (A**2) : 3.35000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.21 REMARK 3 ESD FROM SIGMAA (A) : 0.13 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.23 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.14 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.011 REMARK 3 BOND ANGLES (DEGREES) : 1.500 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 23.40 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.060 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.170 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 1.760 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 2.200 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 3.220 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.32 REMARK 3 BSOL : 50.47 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : ION.PARAM REMARK 3 PARAMETER FILE 4 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : ION.TOP REMARK 3 TOPOLOGY FILE 3 : WATER.TOP REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2YWR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 06-JUL-07. REMARK 100 THE DEPOSITION ID IS D_1000027231. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-DEC-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL26B1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9789, 0.9000, 0.9794 REMARK 200 MONOCHROMATOR : FIXED EXIT SI DOUBLE CRYSTAL REMARK 200 MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RIGAKU JUPITER 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19518 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.770 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 200 DATA REDUNDANCY : 3.600 REMARK 200 R MERGE (I) : 0.07300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.77 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.88 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.20 REMARK 200 R MERGE FOR SHELL (I) : 0.27700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 1JKX REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 37.12 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.96 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.005M COBALT CHLORIDE HEXAHYDRATE, REMARK 280 0.005M NICKEL(II) CHLORIDE HEXAHYDRATE, 0.005M CADMIUM CHLORIDE REMARK 280 HEXAHYDRATE, 0.005M MAGNESIUM CHLORIDE HEXAHYDRATE, 0.1M HEPES, REMARK 280 12% W/V POLYETHYLENE GLYCOL 3350, PH 7.5, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 52.96700 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 29.97750 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 29.97750 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 26.48350 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 29.97750 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 29.97750 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 79.45050 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 29.97750 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 29.97750 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 26.48350 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 29.97750 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 29.97750 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 79.45050 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 52.96700 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4170 ANGSTROM**2 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 -1.000000 0.000000 59.95500 REMARK 350 BIOMT2 2 -1.000000 0.000000 0.000000 59.95500 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 52.96700 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 990 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ARG A 71 N MSE A 72 1.38 REMARK 500 O HOH A 833 O HOH A 930 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 959 O HOH A 1034 5545 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 71 O - C - N ANGL. DEV. = -58.4 DEGREES REMARK 500 PHE A 89 O - C - N ANGL. DEV. = -33.2 DEGREES REMARK 500 ASP A 145 CA - C - N ANGL. DEV. = -19.4 DEGREES REMARK 500 ASP A 145 O - C - N ANGL. DEV. = 18.0 DEGREES REMARK 500 ALA A 146 O - C - N ANGL. DEV. = -11.7 DEGREES REMARK 500 ARG A 169 CA - CB - CG ANGL. DEV. = -16.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 9 -10.66 -142.89 REMARK 500 SER A 133 -151.35 -135.16 REMARK 500 ASP A 201 27.56 49.24 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 169 0.14 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 ARG A 71 52.63 REMARK 500 PHE A 89 41.32 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CO A 766 CO REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LYS A 79 NZ REMARK 620 2 HOH A 909 O 101.1 REMARK 620 3 HOH A 973 O 91.2 98.8 REMARK 620 4 HOH A1004 O 160.6 88.8 70.7 REMARK 620 5 HOH A1010 O 102.4 70.6 164.0 96.5 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CO A 704 CO REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 109 ND1 REMARK 620 2 HOH A 774 O 137.5 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 703 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CO A 704 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CO A 727 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CO A 766 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CO A 767 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: AAE001000857.1 RELATED DB: TARGETDB DBREF 2YWR A 1 216 UNP O67023 O67023_AQUAE 1 216 SEQRES 1 A 216 MSE LEU LYS ILE GLY VAL LEU VAL SER GLY ARG GLY SER SEQRES 2 A 216 ASN LEU GLN ALA ILE ILE ASP ALA ILE GLU SER GLY LYS SEQRES 3 A 216 VAL ASN ALA SER ILE GLU LEU VAL ILE SER ASP ASN PRO SEQRES 4 A 216 LYS ALA TYR ALA ILE GLU ARG CYS LYS LYS HIS ASN VAL SEQRES 5 A 216 GLU CYS LYS VAL ILE GLN ARG LYS GLU PHE PRO SER LYS SEQRES 6 A 216 LYS GLU PHE GLU GLU ARG MSE ALA LEU GLU LEU LYS LYS SEQRES 7 A 216 LYS GLY VAL GLU LEU VAL VAL LEU ALA GLY PHE MSE ARG SEQRES 8 A 216 ILE LEU SER HIS ASN PHE LEU LYS TYR PHE PRO ASN LYS SEQRES 9 A 216 VAL ILE ASN ILE HIS PRO SER LEU ILE PRO ALA PHE GLN SEQRES 10 A 216 GLY LEU HIS ALA GLN LYS GLN ALA VAL GLU PHE GLY VAL SEQRES 11 A 216 LYS PHE SER GLY CYS THR VAL HIS ILE VAL ASP GLU SER SEQRES 12 A 216 VAL ASP ALA GLY PRO VAL ILE VAL GLN ALA VAL VAL PRO SEQRES 13 A 216 VAL LEU PRO GLU ASP ASP GLU ASN THR LEU ALA ASP ARG SEQRES 14 A 216 ILE LEU LYS TRP GLU HIS LYS ILE LEU PRO GLN THR VAL SEQRES 15 A 216 GLN TRP PHE ALA GLN ASP ARG ILE ILE ILE ASP GLY ARG SEQRES 16 A 216 LYS VAL ILE VAL LYS ASP ALA THR TYR GLY THR LEU PRO SEQRES 17 A 216 VAL ASN PRO ALA LEU GLU ILE PHE MODRES 2YWR MSE A 1 MET SELENOMETHIONINE MODRES 2YWR MSE A 72 MET SELENOMETHIONINE MODRES 2YWR MSE A 90 MET SELENOMETHIONINE HET MSE A 1 8 HET MSE A 72 8 HET MSE A 90 8 HET MG A 703 1 HET CO A 704 1 HET CO A 727 1 HET CO A 766 1 HET CO A 767 1 HETNAM MSE SELENOMETHIONINE HETNAM MG MAGNESIUM ION HETNAM CO COBALT (II) ION FORMUL 1 MSE 3(C5 H11 N O2 SE) FORMUL 2 MG MG 2+ FORMUL 3 CO 4(CO 2+) FORMUL 7 HOH *266(H2 O) HELIX 1 1 GLY A 12 SER A 24 1 13 HELIX 2 2 ALA A 41 ASN A 51 1 11 HELIX 3 3 GLN A 58 PHE A 62 5 5 HELIX 4 4 SER A 64 LYS A 79 1 16 HELIX 5 5 SER A 94 LYS A 99 1 6 HELIX 6 6 HIS A 120 GLY A 129 1 10 HELIX 7 7 ASP A 162 GLN A 187 1 26 SHEET 1 A 8 CYS A 54 VAL A 56 0 SHEET 2 A 8 ALA A 29 SER A 36 1 N VAL A 34 O LYS A 55 SHEET 3 A 8 LEU A 2 VAL A 8 1 N VAL A 8 O ILE A 35 SHEET 4 A 8 LEU A 83 LEU A 86 1 O VAL A 85 N GLY A 5 SHEET 5 A 8 VAL A 105 HIS A 109 1 O ILE A 106 N LEU A 86 SHEET 6 A 8 PHE A 132 ILE A 139 -1 O THR A 136 N HIS A 109 SHEET 7 A 8 VAL A 149 PRO A 156 -1 O VAL A 155 N SER A 133 SHEET 8 A 8 VAL A 209 ASN A 210 -1 O ASN A 210 N GLN A 152 SHEET 1 B 2 ILE A 190 ASP A 193 0 SHEET 2 B 2 LYS A 196 VAL A 199 -1 O ILE A 198 N ILE A 191 LINK C MSE A 1 N LEU A 2 1555 1555 1.37 LINK C ARG A 71 N MSE A 72 1555 1555 1.33 LINK C MSE A 72 N ALA A 73 1555 1555 1.40 LINK C PHE A 89 N MSE A 90 1555 1555 1.33 LINK C MSE A 90 N ARG A 91 1555 1555 1.33 LINK NZ LYS A 79 CO CO A 766 1555 1555 2.33 LINK ND1 HIS A 109 CO CO A 704 1555 1555 2.27 LINK O VAL A 157 CO CO A 727 1555 1555 2.78 LINK MG MG A 703 O HOH A 911 1555 1555 2.78 LINK CO CO A 704 O HOH A 774 1555 1555 2.19 LINK CO CO A 766 O HOH A 909 1555 1555 2.35 LINK CO CO A 766 O HOH A 973 1555 1555 2.40 LINK CO CO A 766 O HOH A1004 1555 1555 2.08 LINK CO CO A 766 O HOH A1010 1555 1555 2.15 LINK CO CO A 767 O HOH A 822 1555 1555 2.80 CISPEP 1 ILE A 113 PRO A 114 0 0.60 CISPEP 2 LEU A 207 PRO A 208 0 0.18 CISPEP 3 ASN A 210 PRO A 211 0 -0.34 SITE 1 AC1 3 SER A 13 ASN A 14 HOH A 911 SITE 1 AC2 3 HIS A 109 ASP A 145 HOH A 774 SITE 1 AC3 6 LYS A 131 VAL A 157 LEU A 158 PRO A 159 SITE 2 AC3 6 HOH A 768 HOH A 929 SITE 1 AC4 7 GLU A 53 LYS A 79 HIS A 120 HOH A 909 SITE 2 AC4 7 HOH A 973 HOH A1004 HOH A1010 SITE 1 AC5 5 ILE A 44 CYS A 47 LYS A 48 CYS A 54 SITE 2 AC5 5 HOH A 822 CRYST1 59.955 59.955 105.934 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016679 0.000000 0.000000 0.00000 SCALE2 0.000000 0.016679 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009440 0.00000 HETATM 1 N MSE A 1 16.309 -5.184 28.107 1.00 36.83 N HETATM 2 CA MSE A 1 17.134 -4.121 27.463 1.00 36.00 C HETATM 3 C MSE A 1 16.489 -2.765 27.691 1.00 31.79 C HETATM 4 O MSE A 1 15.315 -2.672 28.033 1.00 31.19 O HETATM 5 CB MSE A 1 17.233 -4.349 25.956 1.00 42.68 C HETATM 6 CG MSE A 1 17.846 -5.655 25.543 1.00 50.85 C HETATM 7 SE MSE A 1 17.587 -5.892 23.782 1.00 61.48 SE HETATM 8 CE MSE A 1 15.921 -6.552 23.770 1.00 58.79 C