data_2YWT # _entry.id 2YWT # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.280 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 2YWT RCSB RCSB027233 WWPDB D_1000027233 # _pdbx_database_PDB_obs_spr.id OBSLTE _pdbx_database_PDB_obs_spr.date 2010-02-23 _pdbx_database_PDB_obs_spr.pdb_id 3ACC _pdbx_database_PDB_obs_spr.replace_pdb_id 2YWT _pdbx_database_PDB_obs_spr.details ? # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id ttk003000125.2 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code OBS _pdbx_database_status.entry_id 2YWT _pdbx_database_status.recvd_initial_deposition_date 2007-04-23 _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf OBS _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Kanagawa, M.' 1 'Baba, S.' 2 'Kuramitsu, S.' 3 'Yokoyama, S.' 4 'Kawai, G.' 5 'Sampei, G.' 6 'RIKEN Structural Genomics/Proteomics Initiative (RSGI)' 7 # _citation.id primary _citation.title 'Crystal structure of hypoxanthine-guanine phosphoribosyltransferase from Thermus thermophilus HB8' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Kanagawa, M.' 1 primary 'Baba, S.' 2 primary 'Kuramitsu, S.' 3 primary 'Yokoyama, S.' 4 primary 'Kawai, G.' 5 primary 'Sampei, G.' 6 # _cell.entry_id 2YWT _cell.length_a 67.142 _cell.length_b 67.142 _cell.length_c 152.545 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 2YWT _symmetry.space_group_name_H-M 'P 65 2 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Hypoxanthine-guanine phosphoribosyltransferase' 20193.264 1 2.4.2.8 ? ? ? 2 non-polymer syn "GUANOSINE-5'-MONOPHOSPHATE" 363.221 1 ? ? ? ? 3 non-polymer syn '1,4-DIETHYLENE DIOXIDE' 88.105 2 ? ? ? ? 4 water nat water 18.015 108 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MKGMFTPGNGPVQISAEAIKKRVEELGGEIARDYQGKTPHLICVLNGAFIFMADLVRAIPLPLTMDFIAISSYGNAFKSS GEVELLKDLRLPIHGRDVIVVEDIVDTGLTLSYLLDYLEARKPASVRVAALLSKPSRRQVEVPIHYLGFEIEDAYVYGYG LDRAQFDRNLPFITSIRPEEE ; _entity_poly.pdbx_seq_one_letter_code_can ;MKGMFTPGNGPVQISAEAIKKRVEELGGEIARDYQGKTPHLICVLNGAFIFMADLVRAIPLPLTMDFIAISSYGNAFKSS GEVELLKDLRLPIHGRDVIVVEDIVDTGLTLSYLLDYLEARKPASVRVAALLSKPSRRQVEVPIHYLGFEIEDAYVYGYG LDRAQFDRNLPFITSIRPEEE ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ttk003000125.2 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 LYS n 1 3 GLY n 1 4 MET n 1 5 PHE n 1 6 THR n 1 7 PRO n 1 8 GLY n 1 9 ASN n 1 10 GLY n 1 11 PRO n 1 12 VAL n 1 13 GLN n 1 14 ILE n 1 15 SER n 1 16 ALA n 1 17 GLU n 1 18 ALA n 1 19 ILE n 1 20 LYS n 1 21 LYS n 1 22 ARG n 1 23 VAL n 1 24 GLU n 1 25 GLU n 1 26 LEU n 1 27 GLY n 1 28 GLY n 1 29 GLU n 1 30 ILE n 1 31 ALA n 1 32 ARG n 1 33 ASP n 1 34 TYR n 1 35 GLN n 1 36 GLY n 1 37 LYS n 1 38 THR n 1 39 PRO n 1 40 HIS n 1 41 LEU n 1 42 ILE n 1 43 CYS n 1 44 VAL n 1 45 LEU n 1 46 ASN n 1 47 GLY n 1 48 ALA n 1 49 PHE n 1 50 ILE n 1 51 PHE n 1 52 MET n 1 53 ALA n 1 54 ASP n 1 55 LEU n 1 56 VAL n 1 57 ARG n 1 58 ALA n 1 59 ILE n 1 60 PRO n 1 61 LEU n 1 62 PRO n 1 63 LEU n 1 64 THR n 1 65 MET n 1 66 ASP n 1 67 PHE n 1 68 ILE n 1 69 ALA n 1 70 ILE n 1 71 SER n 1 72 SER n 1 73 TYR n 1 74 GLY n 1 75 ASN n 1 76 ALA n 1 77 PHE n 1 78 LYS n 1 79 SER n 1 80 SER n 1 81 GLY n 1 82 GLU n 1 83 VAL n 1 84 GLU n 1 85 LEU n 1 86 LEU n 1 87 LYS n 1 88 ASP n 1 89 LEU n 1 90 ARG n 1 91 LEU n 1 92 PRO n 1 93 ILE n 1 94 HIS n 1 95 GLY n 1 96 ARG n 1 97 ASP n 1 98 VAL n 1 99 ILE n 1 100 VAL n 1 101 VAL n 1 102 GLU n 1 103 ASP n 1 104 ILE n 1 105 VAL n 1 106 ASP n 1 107 THR n 1 108 GLY n 1 109 LEU n 1 110 THR n 1 111 LEU n 1 112 SER n 1 113 TYR n 1 114 LEU n 1 115 LEU n 1 116 ASP n 1 117 TYR n 1 118 LEU n 1 119 GLU n 1 120 ALA n 1 121 ARG n 1 122 LYS n 1 123 PRO n 1 124 ALA n 1 125 SER n 1 126 VAL n 1 127 ARG n 1 128 VAL n 1 129 ALA n 1 130 ALA n 1 131 LEU n 1 132 LEU n 1 133 SER n 1 134 LYS n 1 135 PRO n 1 136 SER n 1 137 ARG n 1 138 ARG n 1 139 GLN n 1 140 VAL n 1 141 GLU n 1 142 VAL n 1 143 PRO n 1 144 ILE n 1 145 HIS n 1 146 TYR n 1 147 LEU n 1 148 GLY n 1 149 PHE n 1 150 GLU n 1 151 ILE n 1 152 GLU n 1 153 ASP n 1 154 ALA n 1 155 TYR n 1 156 VAL n 1 157 TYR n 1 158 GLY n 1 159 TYR n 1 160 GLY n 1 161 LEU n 1 162 ASP n 1 163 ARG n 1 164 ALA n 1 165 GLN n 1 166 PHE n 1 167 ASP n 1 168 ARG n 1 169 ASN n 1 170 LEU n 1 171 PRO n 1 172 PHE n 1 173 ILE n 1 174 THR n 1 175 SER n 1 176 ILE n 1 177 ARG n 1 178 PRO n 1 179 GLU n 1 180 GLU n 1 181 GLU n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Thermus _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Thermus thermophilus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 274 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET-11a _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q5SLS3_THET8 _struct_ref.pdbx_db_accession Q5SLS3 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MKGMFTPGNGPVQISAEAIKKRVEELGGEIARDYQGKTPHLICVLNGAFIFMADLVRAIPLPLTMDFIAISSYGNAFKSS GEVELLKDLRLPIHGRDVIVVEDIVDTGLTLSYLLDYLEARKPASVRVAALLSKPSRRQVEVPIHYLGFEIEDAYVYGYG LDRAQFDRNLPFITSIRPEEE ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2YWT _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 181 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q5SLS3 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 181 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 181 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 5GP non-polymer . "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 DIO non-polymer . '1,4-DIETHYLENE DIOXIDE' ? 'C4 H8 O2' 88.105 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 2YWT _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.46 _exptl_crystal.density_percent_sol 49.93 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 8.0 _exptl_crystal_grow.pdbx_details '15% Glycerol, 26% Dioxane, 0.005M GMP, 0.01M magnesium chloride , pH 8.0, VAPOR DIFFUSION, SITTING DROP, temperature 293K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type 'RIGAKU RAXIS V' _diffrn_detector.pdbx_collection_date 2007-03-18 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Fixed exit Si double crystal monochromator' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.0000 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'SPRING-8 BEAMLINE BL26B2' _diffrn_source.pdbx_synchrotron_site SPring-8 _diffrn_source.pdbx_synchrotron_beamline BL26B2 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.0000 # _reflns.entry_id 2YWT _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 50.0 _reflns.d_resolution_high 2.16 _reflns.number_obs 19334 _reflns.number_all ? _reflns.percent_possible_obs 93.4 _reflns.pdbx_Rmerge_I_obs 0.086 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate 14.8 _reflns.pdbx_redundancy 10.2 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 2.16 _reflns_shell.d_res_low 2.24 _reflns_shell.percent_possible_all 86.1 _reflns_shell.Rmerge_I_obs 0.163 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy 9.0 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 1776 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 2YWT _refine.ls_number_reflns_obs 10794 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF 153195.57 _refine.pdbx_data_cutoff_low_absF 0.000000 _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 38.28 _refine.ls_d_res_high 2.16 _refine.ls_percent_reflns_obs 93.1 _refine.ls_R_factor_obs 0.221 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.221 _refine.ls_R_factor_R_free 0.231 _refine.ls_R_factor_R_free_error 0.007 _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 10.3 _refine.ls_number_reflns_R_free 1111 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 24.8 _refine.aniso_B[1][1] 1.78 _refine.aniso_B[2][2] 1.78 _refine.aniso_B[3][3] -3.56 _refine.aniso_B[1][2] 1.32 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'FLAT MODEL' _refine.solvent_model_param_ksol 0.408557 _refine.solvent_model_param_bsol 53.1581 _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model 2YWS _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model RESTRAINED _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 2YWT _refine_analyze.Luzzati_coordinate_error_obs 0.24 _refine_analyze.Luzzati_sigma_a_obs 0.13 _refine_analyze.Luzzati_d_res_low_obs 5.00 _refine_analyze.Luzzati_coordinate_error_free 0.25 _refine_analyze.Luzzati_sigma_a_free 0.21 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1308 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 36 _refine_hist.number_atoms_solvent 108 _refine_hist.number_atoms_total 1452 _refine_hist.d_res_high 2.16 _refine_hist.d_res_low 38.28 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d 0.006 ? ? ? 'X-RAY DIFFRACTION' ? c_bond_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_bond_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg 2.0 ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d 24.0 ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d 1.86 ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_mcbond_it 1.24 1.50 ? ? 'X-RAY DIFFRACTION' ? c_mcangle_it 1.97 2.00 ? ? 'X-RAY DIFFRACTION' ? c_scbond_it 1.84 2.00 ? ? 'X-RAY DIFFRACTION' ? c_scangle_it 2.62 2.50 ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 6 _refine_ls_shell.d_res_high 2.16 _refine_ls_shell.d_res_low 2.30 _refine_ls_shell.number_reflns_R_work 1198 _refine_ls_shell.R_factor_R_work 0.257 _refine_ls_shell.percent_reflns_obs 72.0 _refine_ls_shell.R_factor_R_free 0.334 _refine_ls_shell.R_factor_R_free_error 0.029 _refine_ls_shell.percent_reflns_R_free 10.2 _refine_ls_shell.number_reflns_R_free 136 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # loop_ _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file _pdbx_xplor_file.pdbx_refine_id 1 protein_rep.param protein.top 'X-RAY DIFFRACTION' 2 water_rep.param ligand.top 'X-RAY DIFFRACTION' 3 ligand.param water.top 'X-RAY DIFFRACTION' # _struct.entry_id 2YWT _struct.title 'Crystal structure of hypoxanthine-guanine phosphoribosyltransferase with GMP from Thermus thermophilus HB8' _struct.pdbx_descriptor 'Hypoxanthine-guanine phosphoribosyltransferase (E.C.2.4.2.8)' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2YWT _struct_keywords.pdbx_keywords TRANSFERASE _struct_keywords.text ;Rossmann fold, Structural Genomics, NPPSFA, National Project on Protein Structural and Functional Analyses, RIKEN Structural Genomics/Proteomics Initiative, RSGI, TRANSFERASE ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? E N N 4 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 SER A 15 ? TYR A 34 ? SER A 15 TYR A 34 1 ? 20 HELX_P HELX_P2 2 ALA A 48 ? ARG A 57 ? ALA A 48 ARG A 57 1 ? 10 HELX_P HELX_P3 3 GLY A 108 ? ARG A 121 ? GLY A 108 ARG A 121 1 ? 14 HELX_P HELX_P4 4 PRO A 135 ? ARG A 138 ? PRO A 135 ARG A 138 5 ? 4 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 5 ? B ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? parallel A 2 3 ? parallel A 3 4 ? parallel A 4 5 ? parallel B 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 THR A 64 ? ILE A 68 ? THR A 64 ILE A 68 A 2 HIS A 40 ? VAL A 44 ? HIS A 40 VAL A 44 A 3 ASP A 97 ? VAL A 105 ? ASP A 97 VAL A 105 A 4 SER A 125 ? SER A 133 ? SER A 125 SER A 133 A 5 TYR A 146 ? GLU A 150 ? TYR A 146 GLU A 150 B 1 VAL A 156 ? TYR A 157 ? VAL A 156 TYR A 157 B 2 THR A 174 ? SER A 175 ? THR A 174 SER A 175 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O ASP A 66 ? O ASP A 66 N CYS A 43 ? N CYS A 43 A 2 3 N ILE A 42 ? N ILE A 42 O VAL A 101 ? O VAL A 101 A 3 4 N GLU A 102 ? N GLU A 102 O ALA A 129 ? O ALA A 129 A 4 5 N VAL A 128 ? N VAL A 128 O TYR A 146 ? O TYR A 146 B 1 2 N TYR A 157 ? N TYR A 157 O THR A 174 ? O THR A 174 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 18 'BINDING SITE FOR RESIDUE 5GP A 817' AC2 Software ? ? ? ? 5 'BINDING SITE FOR RESIDUE DIO A 991' AC3 Software ? ? ? ? 8 'BINDING SITE FOR RESIDUE DIO A 992' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 18 GLU A 102 ? GLU A 102 . ? 1_555 ? 2 AC1 18 ASP A 103 ? ASP A 103 . ? 1_555 ? 3 AC1 18 ILE A 104 ? ILE A 104 . ? 1_555 ? 4 AC1 18 ASP A 106 ? ASP A 106 . ? 1_555 ? 5 AC1 18 THR A 107 ? THR A 107 . ? 1_555 ? 6 AC1 18 GLY A 108 ? GLY A 108 . ? 1_555 ? 7 AC1 18 THR A 110 ? THR A 110 . ? 1_555 ? 8 AC1 18 LYS A 134 ? LYS A 134 . ? 1_555 ? 9 AC1 18 ALA A 154 ? ALA A 154 . ? 1_555 ? 10 AC1 18 TYR A 155 ? TYR A 155 . ? 1_555 ? 11 AC1 18 VAL A 156 ? VAL A 156 . ? 1_555 ? 12 AC1 18 LEU A 161 ? LEU A 161 . ? 1_555 ? 13 AC1 18 ASP A 162 ? ASP A 162 . ? 1_555 ? 14 AC1 18 HOH E . ? HOH A 1009 . ? 1_555 ? 15 AC1 18 HOH E . ? HOH A 1061 . ? 1_555 ? 16 AC1 18 HOH E . ? HOH A 1063 . ? 1_555 ? 17 AC1 18 HOH E . ? HOH A 1079 . ? 1_555 ? 18 AC1 18 HOH E . ? HOH A 1096 . ? 1_555 ? 19 AC2 5 ASP A 33 ? ASP A 33 . ? 1_555 ? 20 AC2 5 TYR A 34 ? TYR A 34 . ? 1_555 ? 21 AC2 5 LYS A 37 ? LYS A 37 . ? 1_555 ? 22 AC2 5 SER A 125 ? SER A 125 . ? 1_555 ? 23 AC2 5 ARG A 127 ? ARG A 127 . ? 1_555 ? 24 AC3 8 MET A 4 ? MET A 4 . ? 10_665 ? 25 AC3 8 PHE A 5 ? PHE A 5 . ? 10_665 ? 26 AC3 8 PRO A 60 ? PRO A 60 . ? 1_555 ? 27 AC3 8 LEU A 61 ? LEU A 61 . ? 1_555 ? 28 AC3 8 PRO A 62 ? PRO A 62 . ? 1_555 ? 29 AC3 8 ASP A 167 ? ASP A 167 . ? 10_665 ? 30 AC3 8 LEU A 170 ? LEU A 170 . ? 10_665 ? 31 AC3 8 HOH E . ? HOH A 1042 . ? 10_665 ? # _database_PDB_matrix.entry_id 2YWT _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2YWT _atom_sites.fract_transf_matrix[1][1] 0.014894 _atom_sites.fract_transf_matrix[1][2] 0.008599 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.017198 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.006555 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 1 ? ? ? A . n A 1 2 LYS 2 2 ? ? ? A . n A 1 3 GLY 3 3 3 GLY GLY A . n A 1 4 MET 4 4 4 MET MET A . n A 1 5 PHE 5 5 5 PHE PHE A . n A 1 6 THR 6 6 6 THR THR A . n A 1 7 PRO 7 7 7 PRO PRO A . n A 1 8 GLY 8 8 8 GLY GLY A . n A 1 9 ASN 9 9 9 ASN ASN A . n A 1 10 GLY 10 10 10 GLY GLY A . n A 1 11 PRO 11 11 11 PRO PRO A . n A 1 12 VAL 12 12 12 VAL VAL A . n A 1 13 GLN 13 13 13 GLN GLN A . n A 1 14 ILE 14 14 14 ILE ILE A . n A 1 15 SER 15 15 15 SER SER A . n A 1 16 ALA 16 16 16 ALA ALA A . n A 1 17 GLU 17 17 17 GLU GLU A . n A 1 18 ALA 18 18 18 ALA ALA A . n A 1 19 ILE 19 19 19 ILE ILE A . n A 1 20 LYS 20 20 20 LYS LYS A . n A 1 21 LYS 21 21 21 LYS LYS A . n A 1 22 ARG 22 22 22 ARG ARG A . n A 1 23 VAL 23 23 23 VAL VAL A . n A 1 24 GLU 24 24 24 GLU GLU A . n A 1 25 GLU 25 25 25 GLU GLU A . n A 1 26 LEU 26 26 26 LEU LEU A . n A 1 27 GLY 27 27 27 GLY GLY A . n A 1 28 GLY 28 28 28 GLY GLY A . n A 1 29 GLU 29 29 29 GLU GLU A . n A 1 30 ILE 30 30 30 ILE ILE A . n A 1 31 ALA 31 31 31 ALA ALA A . n A 1 32 ARG 32 32 32 ARG ARG A . n A 1 33 ASP 33 33 33 ASP ASP A . n A 1 34 TYR 34 34 34 TYR TYR A . n A 1 35 GLN 35 35 35 GLN GLN A . n A 1 36 GLY 36 36 36 GLY GLY A . n A 1 37 LYS 37 37 37 LYS LYS A . n A 1 38 THR 38 38 38 THR THR A . n A 1 39 PRO 39 39 39 PRO PRO A . n A 1 40 HIS 40 40 40 HIS HIS A . n A 1 41 LEU 41 41 41 LEU LEU A . n A 1 42 ILE 42 42 42 ILE ILE A . n A 1 43 CYS 43 43 43 CYS CYS A . n A 1 44 VAL 44 44 44 VAL VAL A . n A 1 45 LEU 45 45 45 LEU LEU A . n A 1 46 ASN 46 46 46 ASN ASN A . n A 1 47 GLY 47 47 47 GLY GLY A . n A 1 48 ALA 48 48 48 ALA ALA A . n A 1 49 PHE 49 49 49 PHE PHE A . n A 1 50 ILE 50 50 50 ILE ILE A . n A 1 51 PHE 51 51 51 PHE PHE A . n A 1 52 MET 52 52 52 MET MET A . n A 1 53 ALA 53 53 53 ALA ALA A . n A 1 54 ASP 54 54 54 ASP ASP A . n A 1 55 LEU 55 55 55 LEU LEU A . n A 1 56 VAL 56 56 56 VAL VAL A . n A 1 57 ARG 57 57 57 ARG ARG A . n A 1 58 ALA 58 58 58 ALA ALA A . n A 1 59 ILE 59 59 59 ILE ILE A . n A 1 60 PRO 60 60 60 PRO PRO A . n A 1 61 LEU 61 61 61 LEU LEU A . n A 1 62 PRO 62 62 62 PRO PRO A . n A 1 63 LEU 63 63 63 LEU LEU A . n A 1 64 THR 64 64 64 THR THR A . n A 1 65 MET 65 65 65 MET MET A . n A 1 66 ASP 66 66 66 ASP ASP A . n A 1 67 PHE 67 67 67 PHE PHE A . n A 1 68 ILE 68 68 68 ILE ILE A . n A 1 69 ALA 69 69 69 ALA ALA A . n A 1 70 ILE 70 70 70 ILE ILE A . n A 1 71 SER 71 71 71 SER SER A . n A 1 72 SER 72 72 72 SER SER A . n A 1 73 TYR 73 73 73 TYR TYR A . n A 1 74 GLY 74 74 ? ? ? A . n A 1 75 ASN 75 75 ? ? ? A . n A 1 76 ALA 76 76 ? ? ? A . n A 1 77 PHE 77 77 ? ? ? A . n A 1 78 LYS 78 78 ? ? ? A . n A 1 79 SER 79 79 ? ? ? A . n A 1 80 SER 80 80 ? ? ? A . n A 1 81 GLY 81 81 ? ? ? A . n A 1 82 GLU 82 82 ? ? ? A . n A 1 83 VAL 83 83 ? ? ? A . n A 1 84 GLU 84 84 ? ? ? A . n A 1 85 LEU 85 85 85 LEU LEU A . n A 1 86 LEU 86 86 86 LEU LEU A . n A 1 87 LYS 87 87 87 LYS LYS A . n A 1 88 ASP 88 88 88 ASP ASP A . n A 1 89 LEU 89 89 89 LEU LEU A . n A 1 90 ARG 90 90 90 ARG ARG A . n A 1 91 LEU 91 91 91 LEU LEU A . n A 1 92 PRO 92 92 92 PRO PRO A . n A 1 93 ILE 93 93 93 ILE ILE A . n A 1 94 HIS 94 94 94 HIS HIS A . n A 1 95 GLY 95 95 95 GLY GLY A . n A 1 96 ARG 96 96 96 ARG ARG A . n A 1 97 ASP 97 97 97 ASP ASP A . n A 1 98 VAL 98 98 98 VAL VAL A . n A 1 99 ILE 99 99 99 ILE ILE A . n A 1 100 VAL 100 100 100 VAL VAL A . n A 1 101 VAL 101 101 101 VAL VAL A . n A 1 102 GLU 102 102 102 GLU GLU A . n A 1 103 ASP 103 103 103 ASP ASP A . n A 1 104 ILE 104 104 104 ILE ILE A . n A 1 105 VAL 105 105 105 VAL VAL A . n A 1 106 ASP 106 106 106 ASP ASP A . n A 1 107 THR 107 107 107 THR THR A . n A 1 108 GLY 108 108 108 GLY GLY A . n A 1 109 LEU 109 109 109 LEU LEU A . n A 1 110 THR 110 110 110 THR THR A . n A 1 111 LEU 111 111 111 LEU LEU A . n A 1 112 SER 112 112 112 SER SER A . n A 1 113 TYR 113 113 113 TYR TYR A . n A 1 114 LEU 114 114 114 LEU LEU A . n A 1 115 LEU 115 115 115 LEU LEU A . n A 1 116 ASP 116 116 116 ASP ASP A . n A 1 117 TYR 117 117 117 TYR TYR A . n A 1 118 LEU 118 118 118 LEU LEU A . n A 1 119 GLU 119 119 119 GLU GLU A . n A 1 120 ALA 120 120 120 ALA ALA A . n A 1 121 ARG 121 121 121 ARG ARG A . n A 1 122 LYS 122 122 122 LYS LYS A . n A 1 123 PRO 123 123 123 PRO PRO A . n A 1 124 ALA 124 124 124 ALA ALA A . n A 1 125 SER 125 125 125 SER SER A . n A 1 126 VAL 126 126 126 VAL VAL A . n A 1 127 ARG 127 127 127 ARG ARG A . n A 1 128 VAL 128 128 128 VAL VAL A . n A 1 129 ALA 129 129 129 ALA ALA A . n A 1 130 ALA 130 130 130 ALA ALA A . n A 1 131 LEU 131 131 131 LEU LEU A . n A 1 132 LEU 132 132 132 LEU LEU A . n A 1 133 SER 133 133 133 SER SER A . n A 1 134 LYS 134 134 134 LYS LYS A . n A 1 135 PRO 135 135 135 PRO PRO A . n A 1 136 SER 136 136 136 SER SER A . n A 1 137 ARG 137 137 137 ARG ARG A . n A 1 138 ARG 138 138 138 ARG ARG A . n A 1 139 GLN 139 139 139 GLN GLN A . n A 1 140 VAL 140 140 140 VAL VAL A . n A 1 141 GLU 141 141 141 GLU GLU A . n A 1 142 VAL 142 142 142 VAL VAL A . n A 1 143 PRO 143 143 143 PRO PRO A . n A 1 144 ILE 144 144 144 ILE ILE A . n A 1 145 HIS 145 145 145 HIS HIS A . n A 1 146 TYR 146 146 146 TYR TYR A . n A 1 147 LEU 147 147 147 LEU LEU A . n A 1 148 GLY 148 148 148 GLY GLY A . n A 1 149 PHE 149 149 149 PHE PHE A . n A 1 150 GLU 150 150 150 GLU GLU A . n A 1 151 ILE 151 151 151 ILE ILE A . n A 1 152 GLU 152 152 152 GLU GLU A . n A 1 153 ASP 153 153 153 ASP ASP A . n A 1 154 ALA 154 154 154 ALA ALA A . n A 1 155 TYR 155 155 155 TYR TYR A . n A 1 156 VAL 156 156 156 VAL VAL A . n A 1 157 TYR 157 157 157 TYR TYR A . n A 1 158 GLY 158 158 158 GLY GLY A . n A 1 159 TYR 159 159 159 TYR TYR A . n A 1 160 GLY 160 160 160 GLY GLY A . n A 1 161 LEU 161 161 161 LEU LEU A . n A 1 162 ASP 162 162 162 ASP ASP A . n A 1 163 ARG 163 163 163 ARG ARG A . n A 1 164 ALA 164 164 164 ALA ALA A . n A 1 165 GLN 165 165 165 GLN GLN A . n A 1 166 PHE 166 166 166 PHE PHE A . n A 1 167 ASP 167 167 167 ASP ASP A . n A 1 168 ARG 168 168 168 ARG ARG A . n A 1 169 ASN 169 169 169 ASN ASN A . n A 1 170 LEU 170 170 170 LEU LEU A . n A 1 171 PRO 171 171 171 PRO PRO A . n A 1 172 PHE 172 172 172 PHE PHE A . n A 1 173 ILE 173 173 173 ILE ILE A . n A 1 174 THR 174 174 174 THR THR A . n A 1 175 SER 175 175 175 SER SER A . n A 1 176 ILE 176 176 176 ILE ILE A . n A 1 177 ARG 177 177 177 ARG ARG A . n A 1 178 PRO 178 178 178 PRO PRO A . n A 1 179 GLU 179 179 179 GLU GLU A . n A 1 180 GLU 180 180 ? ? ? A . n A 1 181 GLU 181 181 ? ? ? A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'NPPSFA, National Project on Protein Structural and Functional Analyses' _pdbx_SG_project.full_name_of_center 'RIKEN Structural Genomics/Proteomics Initiative' _pdbx_SG_project.initial_of_center RSGI # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 5GP 1 817 817 5GP 5GP A . C 3 DIO 1 991 991 DIO DIO A . D 3 DIO 1 992 992 DIO DIO A . E 4 HOH 1 993 1 HOH TIP A . E 4 HOH 2 994 2 HOH TIP A . E 4 HOH 3 995 3 HOH TIP A . E 4 HOH 4 996 4 HOH TIP A . E 4 HOH 5 997 5 HOH TIP A . E 4 HOH 6 998 6 HOH TIP A . E 4 HOH 7 999 7 HOH TIP A . E 4 HOH 8 1000 8 HOH TIP A . E 4 HOH 9 1001 9 HOH TIP A . E 4 HOH 10 1002 10 HOH TIP A . E 4 HOH 11 1003 13 HOH TIP A . E 4 HOH 12 1004 14 HOH TIP A . E 4 HOH 13 1005 15 HOH TIP A . E 4 HOH 14 1006 16 HOH TIP A . E 4 HOH 15 1007 17 HOH TIP A . E 4 HOH 16 1008 18 HOH TIP A . E 4 HOH 17 1009 19 HOH TIP A . E 4 HOH 18 1010 20 HOH TIP A . E 4 HOH 19 1011 21 HOH TIP A . E 4 HOH 20 1012 22 HOH TIP A . E 4 HOH 21 1013 23 HOH TIP A . E 4 HOH 22 1014 24 HOH TIP A . E 4 HOH 23 1015 25 HOH TIP A . E 4 HOH 24 1016 26 HOH TIP A . E 4 HOH 25 1017 27 HOH TIP A . E 4 HOH 26 1018 28 HOH TIP A . E 4 HOH 27 1019 29 HOH TIP A . E 4 HOH 28 1020 30 HOH TIP A . E 4 HOH 29 1021 31 HOH TIP A . E 4 HOH 30 1022 32 HOH TIP A . E 4 HOH 31 1023 33 HOH TIP A . E 4 HOH 32 1024 34 HOH TIP A . E 4 HOH 33 1025 36 HOH TIP A . E 4 HOH 34 1026 38 HOH TIP A . E 4 HOH 35 1027 39 HOH TIP A . E 4 HOH 36 1028 40 HOH TIP A . E 4 HOH 37 1029 41 HOH TIP A . E 4 HOH 38 1030 42 HOH TIP A . E 4 HOH 39 1031 43 HOH TIP A . E 4 HOH 40 1032 44 HOH TIP A . E 4 HOH 41 1033 45 HOH TIP A . E 4 HOH 42 1034 46 HOH TIP A . E 4 HOH 43 1035 47 HOH TIP A . E 4 HOH 44 1036 49 HOH TIP A . E 4 HOH 45 1037 50 HOH TIP A . E 4 HOH 46 1038 51 HOH TIP A . E 4 HOH 47 1039 52 HOH TIP A . E 4 HOH 48 1040 53 HOH TIP A . E 4 HOH 49 1041 54 HOH TIP A . E 4 HOH 50 1042 55 HOH TIP A . E 4 HOH 51 1043 56 HOH TIP A . E 4 HOH 52 1044 57 HOH TIP A . E 4 HOH 53 1045 58 HOH TIP A . E 4 HOH 54 1046 59 HOH TIP A . E 4 HOH 55 1047 60 HOH TIP A . E 4 HOH 56 1048 61 HOH TIP A . E 4 HOH 57 1049 62 HOH TIP A . E 4 HOH 58 1050 63 HOH TIP A . E 4 HOH 59 1051 64 HOH TIP A . E 4 HOH 60 1052 65 HOH TIP A . E 4 HOH 61 1053 66 HOH TIP A . E 4 HOH 62 1054 67 HOH TIP A . E 4 HOH 63 1055 68 HOH TIP A . E 4 HOH 64 1056 70 HOH TIP A . E 4 HOH 65 1057 71 HOH TIP A . E 4 HOH 66 1058 72 HOH TIP A . E 4 HOH 67 1059 73 HOH TIP A . E 4 HOH 68 1060 74 HOH TIP A . E 4 HOH 69 1061 75 HOH TIP A . E 4 HOH 70 1062 76 HOH TIP A . E 4 HOH 71 1063 77 HOH TIP A . E 4 HOH 72 1064 78 HOH TIP A . E 4 HOH 73 1065 79 HOH TIP A . E 4 HOH 74 1066 80 HOH TIP A . E 4 HOH 75 1067 81 HOH TIP A . E 4 HOH 76 1068 82 HOH TIP A . E 4 HOH 77 1069 83 HOH TIP A . E 4 HOH 78 1070 84 HOH TIP A . E 4 HOH 79 1071 85 HOH TIP A . E 4 HOH 80 1072 86 HOH TIP A . E 4 HOH 81 1073 87 HOH TIP A . E 4 HOH 82 1074 88 HOH TIP A . E 4 HOH 83 1075 89 HOH TIP A . E 4 HOH 84 1076 90 HOH TIP A . E 4 HOH 85 1077 91 HOH TIP A . E 4 HOH 86 1078 93 HOH TIP A . E 4 HOH 87 1079 95 HOH TIP A . E 4 HOH 88 1080 96 HOH TIP A . E 4 HOH 89 1081 97 HOH TIP A . E 4 HOH 90 1082 99 HOH TIP A . E 4 HOH 91 1083 100 HOH TIP A . E 4 HOH 92 1084 101 HOH TIP A . E 4 HOH 93 1085 102 HOH TIP A . E 4 HOH 94 1086 103 HOH TIP A . E 4 HOH 95 1087 104 HOH TIP A . E 4 HOH 96 1088 105 HOH TIP A . E 4 HOH 97 1089 106 HOH TIP A . E 4 HOH 98 1090 107 HOH TIP A . E 4 HOH 99 1091 108 HOH TIP A . E 4 HOH 100 1092 109 HOH TIP A . E 4 HOH 101 1093 110 HOH TIP A . E 4 HOH 102 1094 111 HOH TIP A . E 4 HOH 103 1095 112 HOH TIP A . E 4 HOH 104 1096 113 HOH TIP A . E 4 HOH 105 1097 114 HOH TIP A . E 4 HOH 106 1098 118 HOH TIP A . E 4 HOH 107 1099 119 HOH TIP A . E 4 HOH 108 1100 120 HOH TIP A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 10_665 -y+1,-x+1,-z+1/6 0.5000000000 -0.8660254038 0.0000000000 33.5710000000 -0.8660254038 -0.5000000000 0.0000000000 58.1466776609 0.0000000000 0.0000000000 -1.0000000000 25.4241666667 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2007-10-23 2 'Structure model' 1 1 2010-02-23 3 'Structure model' 1 2 2011-07-13 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description 1 1 'Structure model' repository 'Initial release' ? 2 2 'Structure model' repository Obsolete ? # _pdbx_audit_revision_group.ordinal 1 _pdbx_audit_revision_group.revision_ordinal 3 _pdbx_audit_revision_group.data_content_type 'Structure model' _pdbx_audit_revision_group.group 'Version format compliance' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal CNS refinement 1.1 ? 1 HKL-2000 'data collection' . ? 2 HKL-2000 'data reduction' . ? 3 HKL-2000 'data scaling' . ? 4 MOLREP phasing . ? 5 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 CA A VAL 44 ? ? C A VAL 44 ? ? N A LEU 45 ? ? 95.12 117.20 -22.08 2.20 Y 2 1 O A VAL 44 ? ? C A VAL 44 ? ? N A LEU 45 ? ? 142.79 122.70 20.09 1.60 Y 3 1 O A LEU 45 ? ? C A LEU 45 ? ? N A ASN 46 ? ? 108.76 122.70 -13.94 1.60 Y 4 1 N A ASN 46 ? ? CA A ASN 46 ? ? CB A ASN 46 ? ? 88.81 110.60 -21.79 1.80 N 5 1 CA A ASN 46 ? ? C A ASN 46 ? ? O A ASN 46 ? ? 133.17 120.10 13.07 2.10 N 6 1 CA A ASN 46 ? ? C A ASN 46 ? ? N A GLY 47 ? ? 102.38 116.20 -13.82 2.00 Y 7 1 O A GLN 165 ? ? C A GLN 165 ? ? N A PHE 166 ? ? 110.03 122.70 -12.67 1.60 Y # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASP A 106 ? ? -98.13 -98.56 2 1 LYS A 134 ? ? -113.73 75.29 # _pdbx_validate_peptide_omega.id 1 _pdbx_validate_peptide_omega.PDB_model_num 1 _pdbx_validate_peptide_omega.auth_comp_id_1 LEU _pdbx_validate_peptide_omega.auth_asym_id_1 A _pdbx_validate_peptide_omega.auth_seq_id_1 45 _pdbx_validate_peptide_omega.PDB_ins_code_1 ? _pdbx_validate_peptide_omega.label_alt_id_1 ? _pdbx_validate_peptide_omega.auth_comp_id_2 ASN _pdbx_validate_peptide_omega.auth_asym_id_2 A _pdbx_validate_peptide_omega.auth_seq_id_2 46 _pdbx_validate_peptide_omega.PDB_ins_code_2 ? _pdbx_validate_peptide_omega.label_alt_id_2 ? _pdbx_validate_peptide_omega.omega 54.77 # loop_ _pdbx_validate_main_chain_plane.id _pdbx_validate_main_chain_plane.PDB_model_num _pdbx_validate_main_chain_plane.auth_comp_id _pdbx_validate_main_chain_plane.auth_asym_id _pdbx_validate_main_chain_plane.auth_seq_id _pdbx_validate_main_chain_plane.PDB_ins_code _pdbx_validate_main_chain_plane.label_alt_id _pdbx_validate_main_chain_plane.improper_torsion_angle 1 1 LEU A 45 ? ? 13.08 2 1 GLN A 165 ? ? -23.89 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET 1 ? A MET 1 2 1 Y 1 A LYS 2 ? A LYS 2 3 1 Y 1 A GLY 74 ? A GLY 74 4 1 Y 1 A ASN 75 ? A ASN 75 5 1 Y 1 A ALA 76 ? A ALA 76 6 1 Y 1 A PHE 77 ? A PHE 77 7 1 Y 1 A LYS 78 ? A LYS 78 8 1 Y 1 A SER 79 ? A SER 79 9 1 Y 1 A SER 80 ? A SER 80 10 1 Y 1 A GLY 81 ? A GLY 81 11 1 Y 1 A GLU 82 ? A GLU 82 12 1 Y 1 A VAL 83 ? A VAL 83 13 1 Y 1 A GLU 84 ? A GLU 84 14 1 Y 1 A GLU 180 ? A GLU 180 15 1 Y 1 A GLU 181 ? A GLU 181 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 "GUANOSINE-5'-MONOPHOSPHATE" 5GP 3 '1,4-DIETHYLENE DIOXIDE' DIO 4 water HOH #