HEADER IMMUNE SYSTEM 23-APR-07 2YWY TITLE STRUCTURE OF NEW ANTIGEN RECEPTOR VARIABLE DOMAIN FROM SHARKS COMPND MOL_ID: 1; COMPND 2 MOLECULE: NEW ANTIGEN RECEPTOR VARIABLE DOMAIN; COMPND 3 CHAIN: A, B, C, D; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ORECTOLOBUS MACULATUS; SOURCE 3 ORGANISM_COMMON: SPOTTED WOBBEGONG; SOURCE 4 ORGANISM_TAXID: 168098; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: TG1; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PGC KEYWDS IG VNAR, 1-A-7, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR V.A.STRELTSOV REVDAT 5 25-OCT-23 2YWY 1 REMARK REVDAT 4 13-JUL-11 2YWY 1 VERSN REVDAT 3 24-FEB-09 2YWY 1 VERSN REVDAT 2 26-FEB-08 2YWY 1 JRNL REVDAT 1 30-OCT-07 2YWY 0 JRNL AUTH D.P.SIMMONS,V.A.STRELTSOV,O.DOLEZAL,P.J.HUDSON,A.M.COLEY, JRNL AUTH 2 M.FOLEY,D.F.PROLL,S.D.NUTTALL JRNL TITL SHARK IGNAR ANTIBODY MIMOTOPES TARGET A MURINE JRNL TITL 2 IMMUNOGLOBULIN THROUGH EXTENDED CDR3 LOOP STRUCTURES JRNL REF PROTEINS V. 71 119 2007 JRNL REFN ISSN 0887-3585 JRNL PMID 17932913 JRNL DOI 10.1002/PROT.21663 REMARK 2 REMARK 2 RESOLUTION. 2.71 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.71 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 21.57 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.8 REMARK 3 NUMBER OF REFLECTIONS : 17386 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.189 REMARK 3 R VALUE (WORKING SET) : 0.180 REMARK 3 FREE R VALUE : 0.270 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.200 REMARK 3 FREE R VALUE TEST SET COUNT : 1969 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.71 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.78 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1048 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 78.46 REMARK 3 BIN R VALUE (WORKING SET) : 0.2720 REMARK 3 BIN FREE R VALUE SET COUNT : 110 REMARK 3 BIN FREE R VALUE : 0.3800 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3316 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 356 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 56.80 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 62.12 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.09000 REMARK 3 B22 (A**2) : 0.37000 REMARK 3 B33 (A**2) : -0.46000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.600 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.354 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.243 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 21.432 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.947 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.873 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3368 ; 0.014 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4548 ; 1.547 ; 1.953 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 426 ; 6.983 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 144 ;33.866 ;23.611 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 586 ;20.273 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 28 ;20.413 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 514 ; 0.102 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2492 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1504 ; 0.235 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2235 ; 0.315 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 255 ; 0.185 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 61 ; 0.212 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 11 ; 0.244 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2159 ; 0.644 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3406 ; 1.185 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1373 ; 1.837 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1142 ; 3.085 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 111 REMARK 3 ORIGIN FOR THE GROUP (A): 42.6420 2.7110 11.2850 REMARK 3 T TENSOR REMARK 3 T11: 0.1250 T22: -0.4287 REMARK 3 T33: -0.3460 T12: -0.0194 REMARK 3 T13: 0.0521 T23: -0.0228 REMARK 3 L TENSOR REMARK 3 L11: 7.3342 L22: 7.5816 REMARK 3 L33: 3.4203 L12: -2.5042 REMARK 3 L13: -0.1577 L23: -2.9074 REMARK 3 S TENSOR REMARK 3 S11: -0.1711 S12: -0.0682 S13: -0.3333 REMARK 3 S21: 0.4993 S22: 0.1644 S23: 0.0532 REMARK 3 S31: 0.4185 S32: -0.0585 S33: 0.0067 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 111 REMARK 3 ORIGIN FOR THE GROUP (A): 57.2880 23.2710 9.5550 REMARK 3 T TENSOR REMARK 3 T11: -0.0859 T22: -0.4207 REMARK 3 T33: -0.2888 T12: 0.0308 REMARK 3 T13: 0.0296 T23: -0.0445 REMARK 3 L TENSOR REMARK 3 L11: 2.7454 L22: 9.0661 REMARK 3 L33: 4.1955 L12: 3.5073 REMARK 3 L13: -0.7413 L23: -1.7301 REMARK 3 S TENSOR REMARK 3 S11: 0.0718 S12: -0.1741 S13: -0.0482 REMARK 3 S21: 0.4441 S22: 0.1187 S23: -0.1324 REMARK 3 S31: 0.1746 S32: -0.1788 S33: -0.1906 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 1 C 111 REMARK 3 ORIGIN FOR THE GROUP (A): 25.8060 22.8210 23.0520 REMARK 3 T TENSOR REMARK 3 T11: -0.0640 T22: -0.3957 REMARK 3 T33: -0.2738 T12: 0.0309 REMARK 3 T13: -0.0168 T23: 0.0362 REMARK 3 L TENSOR REMARK 3 L11: 2.9864 L22: 9.9953 REMARK 3 L33: 7.5785 L12: 2.1246 REMARK 3 L13: -0.2758 L23: 3.2864 REMARK 3 S TENSOR REMARK 3 S11: -0.1650 S12: 0.0221 S13: 0.2134 REMARK 3 S21: 0.3336 S22: 0.3434 S23: -0.3049 REMARK 3 S31: -0.1477 S32: 0.2998 S33: -0.1784 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 1 D 111 REMARK 3 ORIGIN FOR THE GROUP (A): 19.7280 2.5210 36.8750 REMARK 3 T TENSOR REMARK 3 T11: 0.0244 T22: -0.4009 REMARK 3 T33: -0.3600 T12: 0.0621 REMARK 3 T13: 0.0373 T23: 0.0323 REMARK 3 L TENSOR REMARK 3 L11: 2.9245 L22: 11.8456 REMARK 3 L33: 4.9578 L12: 2.0510 REMARK 3 L13: -0.0856 L23: -3.1476 REMARK 3 S TENSOR REMARK 3 S11: -0.2343 S12: 0.1573 S13: 0.0107 REMARK 3 S21: 0.3198 S22: 0.2862 S23: -0.2265 REMARK 3 S31: -0.2099 S32: -0.0112 S33: -0.0519 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2YWY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 24-APR-07. REMARK 100 THE DEPOSITION ID IS D_1000027238. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-AUG-04 REMARK 200 TEMPERATURE (KELVIN) : 113.0 REMARK 200 PH : 4.60 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NO REMARK 200 OPTICS : AXCO MICROCAPILLARY FOCUSING REMARK 200 OPTICS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAR SCANNER 180 MM PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19373 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.700 REMARK 200 RESOLUTION RANGE LOW (A) : 21.570 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.3 REMARK 200 DATA REDUNDANCY : 2.700 REMARK 200 R MERGE (I) : 0.01190 REMARK 200 R SYM (I) : 0.01190 REMARK 200 FOR THE DATA SET : 7.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.80 REMARK 200 COMPLETENESS FOR SHELL (%) : 87.6 REMARK 200 DATA REDUNDANCY IN SHELL : 2.50 REMARK 200 R MERGE FOR SHELL (I) : 0.60000 REMARK 200 R SYM FOR SHELL (I) : 0.60000 REMARK 200 FOR SHELL : 1.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 1VES REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 66.40 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.66 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M ACETATE, 20% PEP (17/8 PO/OH), PH REMARK 280 4.60, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 40.24900 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 50.87700 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 44.33050 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 50.87700 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 40.24900 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 44.33050 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP B 89 REMARK 465 ALA B 90 REMARK 465 MET B 91 REMARK 465 SER B 92 REMARK 465 ASN B 93 REMARK 465 TYR B 94 REMARK 465 SER B 95 REMARK 465 TYR B 96 REMARK 465 PRO B 97 REMARK 465 ILE B 98 REMARK 465 ASP D 89 REMARK 465 ALA D 90 REMARK 465 MET D 91 REMARK 465 SER D 92 REMARK 465 ASN D 93 REMARK 465 TYR D 94 REMARK 465 SER D 95 REMARK 465 TYR D 96 REMARK 465 PRO D 97 REMARK 465 ILE D 98 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 124 O HOH B 114 1.95 REMARK 500 O HOH C 135 O HOH C 138 2.07 REMARK 500 NE ARG C 8 O HOH C 188 2.07 REMARK 500 OE2 GLU A 101 OE2 GLU C 101 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 75 -72.72 -48.36 REMARK 500 ASP A 89 -137.14 -87.02 REMARK 500 LYS B 64 18.74 55.57 REMARK 500 PHE B 66 138.98 -171.04 REMARK 500 ALA B 112 -157.89 -96.70 REMARK 500 ASP C 89 -97.84 -59.08 REMARK 500 ALA C 90 -60.56 -175.68 REMARK 500 SER C 92 132.69 164.44 REMARK 500 ALA D 28 55.91 -90.61 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1VER RELATED DB: PDB REMARK 900 SIMILAR PROTEIN 12Y-1 REMARK 900 RELATED ID: 1VES RELATED DB: PDB REMARK 900 SIMILAR PROTEIN 12Y-2 REMARK 900 RELATED ID: 2COQ RELATED DB: PDB REMARK 900 SIMILAR PROTEIN 12A-9 REMARK 900 RELATED ID: 2YWZ RELATED DB: PDB REMARK 900 SIMILAR PROTEIN 1-A-11 REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE SEQUENCE HAS BEEN DEPOSITED TO DATABASTHE GB WITH REMARK 999 ACCESSION CODE, DQ269922. DBREF 2YWY A 1 111 UNP A9CBG4 A9CBG4_9CHON 1 111 DBREF 2YWY B 1 111 UNP A9CBG4 A9CBG4_9CHON 1 111 DBREF 2YWY C 1 111 UNP A9CBG4 A9CBG4_9CHON 1 111 DBREF 2YWY D 1 111 UNP A9CBG4 A9CBG4_9CHON 1 111 SEQRES 1 A 113 ALA TRP VAL ASP GLN THR PRO ARG SER VAL THR LYS GLU SEQRES 2 A 113 THR GLY GLU SER LEU THR ILE ASN CYS ALA LEU LYS ASN SEQRES 3 A 113 ALA ALA ASP ASP LEU GLU ARG THR ASP TRP TYR ARG THR SEQRES 4 A 113 THR LEU GLY SER THR ASN GLU GLN LYS ILE SER ILE GLY SEQRES 5 A 113 GLY ARG TYR VAL GLU THR VAL ASN LYS GLY SER LYS SER SEQRES 6 A 113 PHE SER LEU ARG ILE ARG ASP LEU ARG VAL GLU ASP SER SEQRES 7 A 113 GLY THR TYR LYS CYS GLY ALA TYR PHE SER ASP ALA MET SEQRES 8 A 113 SER ASN TYR SER TYR PRO ILE PRO GLY GLU LYS GLY ALA SEQRES 9 A 113 GLY THR VAL LEU THR VAL LYS ALA ALA SEQRES 1 B 113 ALA TRP VAL ASP GLN THR PRO ARG SER VAL THR LYS GLU SEQRES 2 B 113 THR GLY GLU SER LEU THR ILE ASN CYS ALA LEU LYS ASN SEQRES 3 B 113 ALA ALA ASP ASP LEU GLU ARG THR ASP TRP TYR ARG THR SEQRES 4 B 113 THR LEU GLY SER THR ASN GLU GLN LYS ILE SER ILE GLY SEQRES 5 B 113 GLY ARG TYR VAL GLU THR VAL ASN LYS GLY SER LYS SER SEQRES 6 B 113 PHE SER LEU ARG ILE ARG ASP LEU ARG VAL GLU ASP SER SEQRES 7 B 113 GLY THR TYR LYS CYS GLY ALA TYR PHE SER ASP ALA MET SEQRES 8 B 113 SER ASN TYR SER TYR PRO ILE PRO GLY GLU LYS GLY ALA SEQRES 9 B 113 GLY THR VAL LEU THR VAL LYS ALA ALA SEQRES 1 C 113 ALA TRP VAL ASP GLN THR PRO ARG SER VAL THR LYS GLU SEQRES 2 C 113 THR GLY GLU SER LEU THR ILE ASN CYS ALA LEU LYS ASN SEQRES 3 C 113 ALA ALA ASP ASP LEU GLU ARG THR ASP TRP TYR ARG THR SEQRES 4 C 113 THR LEU GLY SER THR ASN GLU GLN LYS ILE SER ILE GLY SEQRES 5 C 113 GLY ARG TYR VAL GLU THR VAL ASN LYS GLY SER LYS SER SEQRES 6 C 113 PHE SER LEU ARG ILE ARG ASP LEU ARG VAL GLU ASP SER SEQRES 7 C 113 GLY THR TYR LYS CYS GLY ALA TYR PHE SER ASP ALA MET SEQRES 8 C 113 SER ASN TYR SER TYR PRO ILE PRO GLY GLU LYS GLY ALA SEQRES 9 C 113 GLY THR VAL LEU THR VAL LYS ALA ALA SEQRES 1 D 113 ALA TRP VAL ASP GLN THR PRO ARG SER VAL THR LYS GLU SEQRES 2 D 113 THR GLY GLU SER LEU THR ILE ASN CYS ALA LEU LYS ASN SEQRES 3 D 113 ALA ALA ASP ASP LEU GLU ARG THR ASP TRP TYR ARG THR SEQRES 4 D 113 THR LEU GLY SER THR ASN GLU GLN LYS ILE SER ILE GLY SEQRES 5 D 113 GLY ARG TYR VAL GLU THR VAL ASN LYS GLY SER LYS SER SEQRES 6 D 113 PHE SER LEU ARG ILE ARG ASP LEU ARG VAL GLU ASP SER SEQRES 7 D 113 GLY THR TYR LYS CYS GLY ALA TYR PHE SER ASP ALA MET SEQRES 8 D 113 SER ASN TYR SER TYR PRO ILE PRO GLY GLU LYS GLY ALA SEQRES 9 D 113 GLY THR VAL LEU THR VAL LYS ALA ALA FORMUL 5 HOH *356(H2 O) HELIX 1 1 ARG A 74 ASP A 77 5 4 HELIX 2 2 ARG B 74 ASP B 77 5 4 HELIX 3 3 ARG C 74 ASP C 77 5 4 HELIX 4 4 ARG D 74 ASP D 77 5 4 SHEET 1 A 4 TRP A 2 THR A 6 0 SHEET 2 A 4 LEU A 18 LYS A 25 -1 O LYS A 25 N TRP A 2 SHEET 3 A 4 SER A 65 ILE A 70 -1 O ILE A 70 N LEU A 18 SHEET 4 A 4 TYR A 55 ASN A 60 -1 N ASN A 60 O SER A 65 SHEET 1 B 5 SER A 9 GLU A 13 0 SHEET 2 B 5 THR A 106 LYS A 111 1 O THR A 109 N VAL A 10 SHEET 3 B 5 GLY A 79 SER A 88 -1 N GLY A 79 O LEU A 108 SHEET 4 B 5 ASP A 30 THR A 40 -1 N ASP A 35 O GLY A 84 SHEET 5 B 5 GLN A 47 LYS A 48 -1 O GLN A 47 N ARG A 38 SHEET 1 C 4 SER A 9 GLU A 13 0 SHEET 2 C 4 THR A 106 LYS A 111 1 O THR A 109 N VAL A 10 SHEET 3 C 4 GLY A 79 SER A 88 -1 N GLY A 79 O LEU A 108 SHEET 4 C 4 GLY A 100 LYS A 102 -1 O GLU A 101 N ALA A 85 SHEET 1 D 4 TRP B 2 THR B 6 0 SHEET 2 D 4 LEU B 18 LYS B 25 -1 O LYS B 25 N TRP B 2 SHEET 3 D 4 SER B 65 ILE B 70 -1 O LEU B 68 N ILE B 20 SHEET 4 D 4 TYR B 55 ASN B 60 -1 N THR B 58 O SER B 67 SHEET 1 E 5 SER B 9 GLU B 13 0 SHEET 2 E 5 THR B 106 LYS B 111 1 O THR B 109 N LYS B 12 SHEET 3 E 5 GLY B 79 PHE B 87 -1 N GLY B 79 O LEU B 108 SHEET 4 E 5 LEU B 31 THR B 40 -1 N GLU B 32 O TYR B 86 SHEET 5 E 5 GLN B 47 LYS B 48 -1 O GLN B 47 N ARG B 38 SHEET 1 F 4 SER B 9 GLU B 13 0 SHEET 2 F 4 THR B 106 LYS B 111 1 O THR B 109 N LYS B 12 SHEET 3 F 4 GLY B 79 PHE B 87 -1 N GLY B 79 O LEU B 108 SHEET 4 F 4 GLY B 100 LYS B 102 -1 O GLU B 101 N ALA B 85 SHEET 1 G 4 TRP C 2 THR C 6 0 SHEET 2 G 4 LEU C 18 LYS C 25 -1 O ALA C 23 N ASP C 4 SHEET 3 G 4 SER C 65 ILE C 70 -1 O ILE C 70 N LEU C 18 SHEET 4 G 4 TYR C 55 ASN C 60 -1 N ASN C 60 O SER C 65 SHEET 1 H 5 SER C 9 GLU C 13 0 SHEET 2 H 5 THR C 106 LYS C 111 1 O THR C 109 N VAL C 10 SHEET 3 H 5 GLY C 79 SER C 88 -1 N GLY C 79 O LEU C 108 SHEET 4 H 5 ASP C 30 THR C 40 -1 N TYR C 37 O LYS C 82 SHEET 5 H 5 GLN C 47 LYS C 48 -1 O GLN C 47 N ARG C 38 SHEET 1 I 4 SER C 9 GLU C 13 0 SHEET 2 I 4 THR C 106 LYS C 111 1 O THR C 109 N VAL C 10 SHEET 3 I 4 GLY C 79 SER C 88 -1 N GLY C 79 O LEU C 108 SHEET 4 I 4 GLY C 100 LYS C 102 -1 O GLU C 101 N ALA C 85 SHEET 1 J 4 TRP D 2 THR D 6 0 SHEET 2 J 4 LEU D 18 LYS D 25 -1 O ALA D 23 N ASP D 4 SHEET 3 J 4 SER D 65 ILE D 70 -1 O PHE D 66 N CYS D 22 SHEET 4 J 4 TYR D 55 ASN D 60 -1 N ASN D 60 O SER D 65 SHEET 1 K 5 SER D 9 GLU D 13 0 SHEET 2 K 5 THR D 106 LYS D 111 1 O LYS D 111 N LYS D 12 SHEET 3 K 5 GLY D 79 PHE D 87 -1 N GLY D 79 O LEU D 108 SHEET 4 K 5 LEU D 31 THR D 40 -1 N TYR D 37 O LYS D 82 SHEET 5 K 5 GLN D 47 LYS D 48 -1 O GLN D 47 N ARG D 38 SHEET 1 L 4 SER D 9 GLU D 13 0 SHEET 2 L 4 THR D 106 LYS D 111 1 O LYS D 111 N LYS D 12 SHEET 3 L 4 GLY D 79 PHE D 87 -1 N GLY D 79 O LEU D 108 SHEET 4 L 4 GLY D 100 LYS D 102 -1 O GLU D 101 N ALA D 85 SSBOND 1 CYS A 22 CYS A 83 1555 1555 2.12 SSBOND 2 CYS B 22 CYS B 83 1555 1555 2.05 SSBOND 3 CYS C 22 CYS C 83 1555 1555 2.08 SSBOND 4 CYS D 22 CYS D 83 1555 1555 2.10 CISPEP 1 THR A 6 PRO A 7 0 -5.21 CISPEP 2 THR B 6 PRO B 7 0 0.65 CISPEP 3 THR C 6 PRO C 7 0 -3.19 CISPEP 4 THR D 6 PRO D 7 0 -1.67 CRYST1 80.498 88.661 101.754 90.00 90.00 90.00 P 21 21 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012423 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011279 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009828 0.00000