HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 24-APR-07 2YX6 TITLE CRYSTAL STRUCTURE OF PH0822 COMPND MOL_ID: 1; COMPND 2 MOLECULE: HYPOTHETICAL PROTEIN PH0822; COMPND 3 CHAIN: A, B, C, D; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PYROCOCCUS HORIKOSHII; SOURCE 3 ORGANISM_TAXID: 70601; SOURCE 4 STRAIN: OT3; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET11A KEYWDS STRUCTURAL GENOMICS, UNKNOWN FUNCTION, NPPSFA, NATIONAL PROJECT ON KEYWDS 2 PROTEIN STRUCTURAL AND FUNCTIONAL ANALYSES, RIKEN STRUCTURAL KEYWDS 3 GENOMICS/PROTEOMICS INITIATIVE, RSGI EXPDTA X-RAY DIFFRACTION AUTHOR T.HOSAKA,K.MURAYAMA,T.TERADA,M.SHIROUZU,S.YOKOYAMA,RIKEN STRUCTURAL AUTHOR 2 GENOMICS/PROTEOMICS INITIATIVE (RSGI) REVDAT 4 25-OCT-23 2YX6 1 REMARK REVDAT 3 13-JUL-11 2YX6 1 VERSN REVDAT 2 24-FEB-09 2YX6 1 VERSN REVDAT 1 30-OCT-07 2YX6 0 JRNL AUTH T.HOSAKA,K.MURAYAMA,T.TERADA,M.SHIROUZU,S.YOKOYAMA JRNL TITL CRYSTAL STRUCTURE OF PH0822 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 77.3 REMARK 3 NUMBER OF REFLECTIONS : 20849 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.217 REMARK 3 R VALUE (WORKING SET) : 0.214 REMARK 3 FREE R VALUE : 0.262 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 1084 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 676 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 34.24 REMARK 3 BIN R VALUE (WORKING SET) : 0.2120 REMARK 3 BIN FREE R VALUE SET COUNT : 39 REMARK 3 BIN FREE R VALUE : 0.2920 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3529 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 27 REMARK 3 SOLVENT ATOMS : 107 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 12.20 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.10 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.01000 REMARK 3 B22 (A**2) : 0.53000 REMARK 3 B33 (A**2) : -0.43000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.12000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.365 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.244 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.157 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.514 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.929 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.894 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3628 ; 0.021 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4883 ; 1.871 ; 1.962 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 435 ; 5.583 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 169 ;31.245 ;23.195 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 632 ;19.313 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 27 ;18.185 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 530 ; 0.137 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2716 ; 0.009 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1601 ; 0.252 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2462 ; 0.331 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 148 ; 0.164 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 81 ; 0.247 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 16 ; 0.190 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2226 ; 1.385 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3514 ; 2.172 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1598 ; 3.263 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1369 ; 4.929 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2YX6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 09-JUL-07. REMARK 100 THE DEPOSITION ID IS D_1000027246. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-OCT-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL26B1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : SI REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RIGAKU JUPITER 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21963 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 77.4 REMARK 200 DATA REDUNDANCY : 2.758 REMARK 200 R MERGE (I) : 0.06700 REMARK 200 R SYM (I) : 0.06000 REMARK 200 FOR THE DATA SET : 15.8657 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.09 REMARK 200 COMPLETENESS FOR SHELL (%) : 40.6 REMARK 200 DATA REDUNDANCY IN SHELL : 1.50 REMARK 200 R MERGE FOR SHELL (I) : 0.12300 REMARK 200 R SYM FOR SHELL (I) : 0.14400 REMARK 200 FOR SHELL : 4.515 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: 1O13 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 37.05 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.95 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG8000, 0.01M IMIDAZOLE, 0.01M REMARK 280 ADENOSINE-5-TRIPHOSPHATE DISODIUM SALT, PH 6.5, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 47.46600 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 49.93850 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 47.46600 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 49.93850 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -18.54566 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 45.15163 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 48 REMARK 465 GLU A 49 REMARK 465 HIS A 50 REMARK 465 GLY A 51 REMARK 465 PRO A 52 REMARK 465 LYS A 116 REMARK 465 ILE A 117 REMARK 465 GLU A 118 REMARK 465 LYS A 119 REMARK 465 GLU A 120 REMARK 465 HIS A 121 REMARK 465 GLU B 48 REMARK 465 GLU B 49 REMARK 465 HIS B 50 REMARK 465 GLY B 51 REMARK 465 PRO B 52 REMARK 465 ILE B 117 REMARK 465 GLU B 118 REMARK 465 LYS B 119 REMARK 465 GLU B 120 REMARK 465 HIS B 121 REMARK 465 ARG C 11 REMARK 465 GLY C 12 REMARK 465 GLY C 51 REMARK 465 PRO C 52 REMARK 465 ILE C 117 REMARK 465 GLU C 118 REMARK 465 LYS C 119 REMARK 465 GLU C 120 REMARK 465 HIS C 121 REMARK 465 GLU D 48 REMARK 465 GLU D 49 REMARK 465 HIS D 50 REMARK 465 GLU D 115 REMARK 465 LYS D 116 REMARK 465 ILE D 117 REMARK 465 GLU D 118 REMARK 465 LYS D 119 REMARK 465 GLU D 120 REMARK 465 HIS D 121 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 36 CB - CG - OD1 ANGL. DEV. = 5.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 70 -85.56 -83.33 REMARK 500 ASP B 10 3.23 -69.68 REMARK 500 GLU B 35 32.32 -92.21 REMARK 500 LYS B 38 -66.42 -104.58 REMARK 500 ASN B 39 76.03 -107.44 REMARK 500 PRO B 46 45.67 -68.27 REMARK 500 TYR B 70 -75.41 -90.50 REMARK 500 PRO C 46 155.87 -46.18 REMARK 500 ASP C 54 -58.94 -23.56 REMARK 500 TYR C 70 -73.96 -90.87 REMARK 500 LYS C 106 63.08 -153.67 REMARK 500 PRO D 46 23.84 -76.82 REMARK 500 PRO D 52 13.22 -68.83 REMARK 500 TYR D 70 -77.61 -105.43 REMARK 500 LYS D 106 76.65 -49.52 REMARK 500 ASP D 112 57.72 -106.63 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADP C 1001 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: PHO001000822.1 RELATED DB: TARGETDB DBREF 2YX6 A 1 121 UNP O58552 O58552_PYRHO 1 121 DBREF 2YX6 B 1 121 UNP O58552 O58552_PYRHO 1 121 DBREF 2YX6 C 1 121 UNP O58552 O58552_PYRHO 1 121 DBREF 2YX6 D 1 121 UNP O58552 O58552_PYRHO 1 121 SEQRES 1 A 121 MET ARG VAL ALA ILE PRO ALA GLU ASP ASP ARG GLY ILE SEQRES 2 A 121 LYS SER ASN VAL SER LYS HIS PHE GLY ARG SER ARG TYR SEQRES 3 A 121 PHE VAL PHE VAL ASP ILE GLU GLY GLU ASP VAL LYS ASN SEQRES 4 A 121 VAL GLU VAL VAL GLU VAL PRO PHE GLU GLU HIS GLY PRO SEQRES 5 A 121 GLY ASP LEU PRO ASN PHE ILE LYS ASP HIS GLY ALA LYS SEQRES 6 A 121 ILE VAL LEU THR TYR GLY ILE GLY ARG ARG ALA ILE GLU SEQRES 7 A 121 TYR PHE ASN SER LEU GLY ILE SER VAL VAL THR GLY VAL SEQRES 8 A 121 TYR GLY ARG ILE SER ASP VAL ILE LYS ALA PHE ILE GLY SEQRES 9 A 121 GLY LYS LEU LYS ILE ASP TYR ASP TRP LYS GLU LYS ILE SEQRES 10 A 121 GLU LYS GLU HIS SEQRES 1 B 121 MET ARG VAL ALA ILE PRO ALA GLU ASP ASP ARG GLY ILE SEQRES 2 B 121 LYS SER ASN VAL SER LYS HIS PHE GLY ARG SER ARG TYR SEQRES 3 B 121 PHE VAL PHE VAL ASP ILE GLU GLY GLU ASP VAL LYS ASN SEQRES 4 B 121 VAL GLU VAL VAL GLU VAL PRO PHE GLU GLU HIS GLY PRO SEQRES 5 B 121 GLY ASP LEU PRO ASN PHE ILE LYS ASP HIS GLY ALA LYS SEQRES 6 B 121 ILE VAL LEU THR TYR GLY ILE GLY ARG ARG ALA ILE GLU SEQRES 7 B 121 TYR PHE ASN SER LEU GLY ILE SER VAL VAL THR GLY VAL SEQRES 8 B 121 TYR GLY ARG ILE SER ASP VAL ILE LYS ALA PHE ILE GLY SEQRES 9 B 121 GLY LYS LEU LYS ILE ASP TYR ASP TRP LYS GLU LYS ILE SEQRES 10 B 121 GLU LYS GLU HIS SEQRES 1 C 121 MET ARG VAL ALA ILE PRO ALA GLU ASP ASP ARG GLY ILE SEQRES 2 C 121 LYS SER ASN VAL SER LYS HIS PHE GLY ARG SER ARG TYR SEQRES 3 C 121 PHE VAL PHE VAL ASP ILE GLU GLY GLU ASP VAL LYS ASN SEQRES 4 C 121 VAL GLU VAL VAL GLU VAL PRO PHE GLU GLU HIS GLY PRO SEQRES 5 C 121 GLY ASP LEU PRO ASN PHE ILE LYS ASP HIS GLY ALA LYS SEQRES 6 C 121 ILE VAL LEU THR TYR GLY ILE GLY ARG ARG ALA ILE GLU SEQRES 7 C 121 TYR PHE ASN SER LEU GLY ILE SER VAL VAL THR GLY VAL SEQRES 8 C 121 TYR GLY ARG ILE SER ASP VAL ILE LYS ALA PHE ILE GLY SEQRES 9 C 121 GLY LYS LEU LYS ILE ASP TYR ASP TRP LYS GLU LYS ILE SEQRES 10 C 121 GLU LYS GLU HIS SEQRES 1 D 121 MET ARG VAL ALA ILE PRO ALA GLU ASP ASP ARG GLY ILE SEQRES 2 D 121 LYS SER ASN VAL SER LYS HIS PHE GLY ARG SER ARG TYR SEQRES 3 D 121 PHE VAL PHE VAL ASP ILE GLU GLY GLU ASP VAL LYS ASN SEQRES 4 D 121 VAL GLU VAL VAL GLU VAL PRO PHE GLU GLU HIS GLY PRO SEQRES 5 D 121 GLY ASP LEU PRO ASN PHE ILE LYS ASP HIS GLY ALA LYS SEQRES 6 D 121 ILE VAL LEU THR TYR GLY ILE GLY ARG ARG ALA ILE GLU SEQRES 7 D 121 TYR PHE ASN SER LEU GLY ILE SER VAL VAL THR GLY VAL SEQRES 8 D 121 TYR GLY ARG ILE SER ASP VAL ILE LYS ALA PHE ILE GLY SEQRES 9 D 121 GLY LYS LEU LYS ILE ASP TYR ASP TRP LYS GLU LYS ILE SEQRES 10 D 121 GLU LYS GLU HIS HET ADP C1001 27 HETNAM ADP ADENOSINE-5'-DIPHOSPHATE FORMUL 5 ADP C10 H15 N5 O10 P2 FORMUL 6 HOH *107(H2 O) HELIX 1 1 ARG A 11 SER A 15 5 5 HELIX 2 2 GLY A 53 HIS A 62 1 10 HELIX 3 3 GLY A 73 LEU A 83 1 11 HELIX 4 4 ARG A 94 GLY A 104 1 11 HELIX 5 5 ARG B 11 SER B 15 5 5 HELIX 6 6 GLY B 53 HIS B 62 1 10 HELIX 7 7 GLY B 73 LEU B 83 1 11 HELIX 8 8 ARG B 94 GLY B 104 1 11 HELIX 9 9 GLY C 53 HIS C 62 1 10 HELIX 10 10 GLY C 73 LEU C 83 1 11 HELIX 11 11 ARG C 94 GLY C 104 1 11 HELIX 12 12 ARG D 11 SER D 15 5 5 HELIX 13 13 GLY D 53 ASP D 61 1 9 HELIX 14 14 GLY D 73 LEU D 83 1 11 HELIX 15 15 ARG D 94 GLY D 104 1 11 SHEET 1 A 8 SER A 86 VAL A 88 0 SHEET 2 A 8 ILE A 66 LEU A 68 1 N VAL A 67 O VAL A 88 SHEET 3 A 8 ARG A 2 ALA A 7 1 N ALA A 4 O ILE A 66 SHEET 4 A 8 TYR A 26 GLU A 33 -1 O VAL A 30 N VAL A 3 SHEET 5 A 8 ASP A 36 GLU A 44 -1 O ASP A 36 N GLU A 33 SHEET 6 A 8 GLU B 41 GLU B 44 1 O VAL B 42 N VAL A 42 SHEET 7 A 8 TYR B 26 GLU B 33 -1 N PHE B 29 O GLU B 41 SHEET 8 A 8 ASP B 36 VAL B 37 -1 O ASP B 36 N GLU B 33 SHEET 1 B10 SER A 86 VAL A 88 0 SHEET 2 B10 ILE A 66 LEU A 68 1 N VAL A 67 O VAL A 88 SHEET 3 B10 ARG A 2 ALA A 7 1 N ALA A 4 O ILE A 66 SHEET 4 B10 TYR A 26 GLU A 33 -1 O VAL A 30 N VAL A 3 SHEET 5 B10 ASP A 36 GLU A 44 -1 O ASP A 36 N GLU A 33 SHEET 6 B10 GLU B 41 GLU B 44 1 O VAL B 42 N VAL A 42 SHEET 7 B10 TYR B 26 GLU B 33 -1 N PHE B 29 O GLU B 41 SHEET 8 B10 ARG B 2 ALA B 7 -1 N ALA B 7 O TYR B 26 SHEET 9 B10 ILE B 66 LEU B 68 1 O ILE B 66 N ALA B 4 SHEET 10 B10 SER B 86 VAL B 88 1 O VAL B 88 N VAL B 67 SHEET 1 C 5 ASP C 36 GLU C 44 0 SHEET 2 C 5 TYR C 26 GLU C 33 -1 N PHE C 29 O GLU C 41 SHEET 3 C 5 ARG C 2 ALA C 7 -1 N ALA C 7 O TYR C 26 SHEET 4 C 5 ILE C 66 LEU C 68 1 O ILE C 66 N ALA C 4 SHEET 5 C 5 SER C 86 VAL C 88 1 O VAL C 88 N VAL C 67 SHEET 1 D 5 ASP D 36 GLU D 44 0 SHEET 2 D 5 TYR D 26 GLU D 33 -1 N PHE D 29 O GLU D 41 SHEET 3 D 5 ARG D 2 ALA D 7 -1 N VAL D 3 O VAL D 30 SHEET 4 D 5 ILE D 66 LEU D 68 1 O LEU D 68 N ALA D 4 SHEET 5 D 5 SER D 86 VAL D 88 1 O VAL D 88 N VAL D 67 SITE 1 AC1 13 ARG B 74 ILE B 77 VAL B 87 THR B 89 SITE 2 AC1 13 LYS B 114 HOH B 129 HOH B 134 ILE C 77 SITE 3 AC1 13 ASN C 81 VAL C 87 TRP C 113 LYS C 114 SITE 4 AC1 13 HOH C1008 CRYST1 94.932 99.877 48.812 90.00 112.33 90.00 C 1 2 1 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010534 0.000000 0.004327 0.00000 SCALE2 0.000000 0.010012 0.000000 0.00000 SCALE3 0.000000 0.000000 0.022148 0.00000