data_2YXD # _entry.id 2YXD # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.279 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 2YXD RCSB RCSB027253 WWPDB D_1000027253 # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id mja001000391.1 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2YXD _pdbx_database_status.recvd_initial_deposition_date 2007-04-26 _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Padmanabhan, B.' 1 'Bessho, Y.' 2 'Yokoyama, S.' 3 'RIKEN Structural Genomics/Proteomics Initiative (RSGI)' 4 # _citation.id primary _citation.title 'Crystal Structure of Cobalamin biosynthesis precorrin 8W decarboxylase (cbiT)' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Padmanabhan, B.' 1 primary 'Bessho, Y.' 2 primary 'Yokoyama, S.' 3 # _cell.entry_id 2YXD _cell.length_a 93.442 _cell.length_b 93.442 _cell.length_c 81.042 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 2YXD _symmetry.space_group_name_H-M 'P 41 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Probable cobalt-precorrin-6Y C(15)-methyltransferase [decarboxylating]' 20720.658 2 2.1.1.- ? ? ? 2 non-polymer syn 'SULFATE ION' 96.063 2 ? ? ? ? 3 non-polymer syn '2-(N-MORPHOLINO)-ETHANESULFONIC ACID' 195.237 1 ? ? ? ? 4 water nat water 18.015 108 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Cobalamin Biosynthesis Precorrin 8W Decarboxylases' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;(MSE)KY(MSE)IPDEEFIRREGVPITKEEIRAVSIGKLNLNKDDVVVDVGCGSGG(MSE)TVEIAKRCKFVYAIDYLDG AIEVTKQNLAKFNIKNCQIIKGRAEDVLDKLEFNKAFIGGTKNIEKIIEILDKKKINHIVANTIVLENAAKIINEFESRG YNVDAVNVFISYAKKIPSGH(MSE)FLAKNPITIIKAVR ; _entity_poly.pdbx_seq_one_letter_code_can ;MKYMIPDEEFIRREGVPITKEEIRAVSIGKLNLNKDDVVVDVGCGSGGMTVEIAKRCKFVYAIDYLDGAIEVTKQNLAKF NIKNCQIIKGRAEDVLDKLEFNKAFIGGTKNIEKIIEILDKKKINHIVANTIVLENAAKIINEFESRGYNVDAVNVFISY AKKIPSGHMFLAKNPITIIKAVR ; _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier mja001000391.1 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MSE n 1 2 LYS n 1 3 TYR n 1 4 MSE n 1 5 ILE n 1 6 PRO n 1 7 ASP n 1 8 GLU n 1 9 GLU n 1 10 PHE n 1 11 ILE n 1 12 ARG n 1 13 ARG n 1 14 GLU n 1 15 GLY n 1 16 VAL n 1 17 PRO n 1 18 ILE n 1 19 THR n 1 20 LYS n 1 21 GLU n 1 22 GLU n 1 23 ILE n 1 24 ARG n 1 25 ALA n 1 26 VAL n 1 27 SER n 1 28 ILE n 1 29 GLY n 1 30 LYS n 1 31 LEU n 1 32 ASN n 1 33 LEU n 1 34 ASN n 1 35 LYS n 1 36 ASP n 1 37 ASP n 1 38 VAL n 1 39 VAL n 1 40 VAL n 1 41 ASP n 1 42 VAL n 1 43 GLY n 1 44 CYS n 1 45 GLY n 1 46 SER n 1 47 GLY n 1 48 GLY n 1 49 MSE n 1 50 THR n 1 51 VAL n 1 52 GLU n 1 53 ILE n 1 54 ALA n 1 55 LYS n 1 56 ARG n 1 57 CYS n 1 58 LYS n 1 59 PHE n 1 60 VAL n 1 61 TYR n 1 62 ALA n 1 63 ILE n 1 64 ASP n 1 65 TYR n 1 66 LEU n 1 67 ASP n 1 68 GLY n 1 69 ALA n 1 70 ILE n 1 71 GLU n 1 72 VAL n 1 73 THR n 1 74 LYS n 1 75 GLN n 1 76 ASN n 1 77 LEU n 1 78 ALA n 1 79 LYS n 1 80 PHE n 1 81 ASN n 1 82 ILE n 1 83 LYS n 1 84 ASN n 1 85 CYS n 1 86 GLN n 1 87 ILE n 1 88 ILE n 1 89 LYS n 1 90 GLY n 1 91 ARG n 1 92 ALA n 1 93 GLU n 1 94 ASP n 1 95 VAL n 1 96 LEU n 1 97 ASP n 1 98 LYS n 1 99 LEU n 1 100 GLU n 1 101 PHE n 1 102 ASN n 1 103 LYS n 1 104 ALA n 1 105 PHE n 1 106 ILE n 1 107 GLY n 1 108 GLY n 1 109 THR n 1 110 LYS n 1 111 ASN n 1 112 ILE n 1 113 GLU n 1 114 LYS n 1 115 ILE n 1 116 ILE n 1 117 GLU n 1 118 ILE n 1 119 LEU n 1 120 ASP n 1 121 LYS n 1 122 LYS n 1 123 LYS n 1 124 ILE n 1 125 ASN n 1 126 HIS n 1 127 ILE n 1 128 VAL n 1 129 ALA n 1 130 ASN n 1 131 THR n 1 132 ILE n 1 133 VAL n 1 134 LEU n 1 135 GLU n 1 136 ASN n 1 137 ALA n 1 138 ALA n 1 139 LYS n 1 140 ILE n 1 141 ILE n 1 142 ASN n 1 143 GLU n 1 144 PHE n 1 145 GLU n 1 146 SER n 1 147 ARG n 1 148 GLY n 1 149 TYR n 1 150 ASN n 1 151 VAL n 1 152 ASP n 1 153 ALA n 1 154 VAL n 1 155 ASN n 1 156 VAL n 1 157 PHE n 1 158 ILE n 1 159 SER n 1 160 TYR n 1 161 ALA n 1 162 LYS n 1 163 LYS n 1 164 ILE n 1 165 PRO n 1 166 SER n 1 167 GLY n 1 168 HIS n 1 169 MSE n 1 170 PHE n 1 171 LEU n 1 172 ALA n 1 173 LYS n 1 174 ASN n 1 175 PRO n 1 176 ILE n 1 177 THR n 1 178 ILE n 1 179 ILE n 1 180 LYS n 1 181 ALA n 1 182 VAL n 1 183 ARG n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Methanocaldococcus _entity_src_gen.pdbx_gene_src_gene cbiT _entity_src_gen.gene_src_species 'Methanocaldococcus jannaschii' _entity_src_gen.gene_src_strain 'DSM 2661' _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Methanocaldococcus jannaschii' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 243232 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21-CodonPlus (DE3)-RIL-X' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET-21a _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code CBIT_METJA _struct_ref.pdbx_db_accession Q57836 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MKYMIPDEEFIRREGVPITKEEIRAVSIGKLNLNKDDVVVDVGCGSGGMTVEIAKRCKFVYAIDYLDGAIEVTKQNLAKF NIKNCQIIKGRAEDVLDKLEFNKAFIGGTKNIEKIIEILDKKKINHIVANTIVLENAAKIINEFESRGYNVDAVNVFISY AKKIPSGHMFLAKNPITIIKAVR ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2YXD A 1 ? 183 ? Q57836 1 ? 183 ? 1 183 2 1 2YXD B 1 ? 183 ? Q57836 1 ? 183 ? 1 183 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MES non-polymer . '2-(N-MORPHOLINO)-ETHANESULFONIC ACID' ? 'C6 H13 N O4 S' 195.237 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 SO4 non-polymer . 'SULFATE ION' ? 'O4 S -2' 96.063 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 2YXD _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.13 _exptl_crystal.density_percent_sol 42.36 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'OIL BATCH' _exptl_crystal_grow.temp 298.0 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.0 _exptl_crystal_grow.pdbx_details '50% PEG 400, 0.1M MES, pH 6.0, OIL BATCH, temperature 298.0K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 120 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'RIGAKU JUPITER 210' _diffrn_detector.pdbx_collection_date ? _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Si double crystal monochromator' _diffrn_radiation.pdbx_diffrn_protocol MAD _diffrn_radiation.pdbx_scattering_type x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 0.97891 1.0 2 0.90000 1.0 3 0.97928 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'SPRING-8 BEAMLINE BL26B1' _diffrn_source.pdbx_synchrotron_site SPring-8 _diffrn_source.pdbx_synchrotron_beamline BL26B1 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list '0.97891, 0.90000, 0.97928' # _reflns.entry_id 2YXD _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I -3 _reflns.d_resolution_high 2.3 _reflns.d_resolution_low 50.0 _reflns.number_all 16507 _reflns.number_obs 16322 _reflns.percent_possible_obs 98.9 _reflns.pdbx_Rmerge_I_obs 0.089 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 12.6 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 2.30 _reflns_shell.d_res_low 2.38 _reflns_shell.percent_possible_all 94.4 _reflns_shell.Rmerge_I_obs 0.36 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy 9.6 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 1539 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 2YXD _refine.ls_number_reflns_obs 14721 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 20.00 _refine.ls_d_res_high 2.30 _refine.ls_percent_reflns_obs 94.23 _refine.ls_R_factor_obs 0.20171 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.19793 _refine.ls_R_factor_R_free 0.27322 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.1 _refine.ls_number_reflns_R_free 788 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.954 _refine.correlation_coeff_Fo_to_Fc_free 0.923 _refine.B_iso_mean 49.032 _refine.aniso_B[1][1] 1.80 _refine.aniso_B[2][2] 1.80 _refine.aniso_B[3][3] -3.60 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'BABINET MODEL WITH MASK' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.453 _refine.pdbx_overall_ESU_R_Free 0.289 _refine.overall_SU_ML 0.212 _refine.overall_SU_B 8.744 _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2763 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 22 _refine_hist.number_atoms_solvent 108 _refine_hist.number_atoms_total 2893 _refine_hist.d_res_high 2.30 _refine_hist.d_res_low 20.00 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.031 0.022 ? 2815 'X-RAY DIFFRACTION' ? r_angle_refined_deg 2.486 1.974 ? 3793 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 7.252 5.000 ? 358 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 42.420 26.000 ? 115 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 18.858 15.000 ? 536 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 15.103 15.000 ? 10 'X-RAY DIFFRACTION' ? r_chiral_restr 0.195 0.200 ? 450 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.010 0.020 ? 2026 'X-RAY DIFFRACTION' ? r_nbd_refined 0.270 0.200 ? 1422 'X-RAY DIFFRACTION' ? r_nbtor_refined 0.333 0.200 ? 1970 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 0.193 0.200 ? 147 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 0.320 0.200 ? 73 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 0.175 0.200 ? 9 'X-RAY DIFFRACTION' ? r_mcbond_it 1.553 1.500 ? 1842 'X-RAY DIFFRACTION' ? r_mcangle_it 2.455 2.000 ? 2886 'X-RAY DIFFRACTION' ? r_scbond_it 4.139 3.000 ? 1085 'X-RAY DIFFRACTION' ? r_scangle_it 6.376 4.500 ? 907 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 2.300 _refine_ls_shell.d_res_low 2.359 _refine_ls_shell.number_reflns_R_work 896 _refine_ls_shell.R_factor_R_work 0.205 _refine_ls_shell.percent_reflns_obs 80.83 _refine_ls_shell.R_factor_R_free 0.328 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 57 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 2YXD _struct.title 'Crystal Structure of Cobalamin biosynthesis precorrin 8W decarboxylase (cbiT)' _struct.pdbx_descriptor 'Probable cobalt-precorrin-6Y C(15)-methyltransferase [decarboxylating] (E.C.2.1.1.-)' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2YXD _struct_keywords.pdbx_keywords TRANSFERASE _struct_keywords.text ;Alpha and beta protein (a/b) Class, Methyltransferase superfamily, Structural Genomics, NPPSFA, National Project on Protein Structural and Functional Analyses, RIKEN Structural Genomics/Proteomics Initiative, RSGI, TRANSFERASE ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? E N N 3 ? F N N 4 ? G N N 4 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 LYS A 20 ? ASN A 32 ? LYS A 20 ASN A 32 1 ? 13 HELX_P HELX_P2 2 GLY A 47 ? LYS A 55 ? GLY A 47 LYS A 55 1 ? 9 HELX_P HELX_P3 3 LEU A 66 ? PHE A 80 ? LEU A 66 PHE A 80 1 ? 15 HELX_P HELX_P4 4 ARG A 91 ? LEU A 96 ? ARG A 91 LEU A 96 1 ? 6 HELX_P HELX_P5 5 ASP A 97 ? LEU A 99 ? ASP A 97 LEU A 99 5 ? 3 HELX_P HELX_P6 6 ASN A 111 ? LYS A 122 ? ASN A 111 LYS A 122 1 ? 12 HELX_P HELX_P7 7 VAL A 133 ? ARG A 147 ? VAL A 133 ARG A 147 1 ? 15 HELX_P HELX_P8 8 LYS B 20 ? ASN B 32 ? LYS B 20 ASN B 32 1 ? 13 HELX_P HELX_P9 9 GLY B 47 ? LYS B 55 ? GLY B 47 LYS B 55 1 ? 9 HELX_P HELX_P10 10 LEU B 66 ? PHE B 80 ? LEU B 66 PHE B 80 1 ? 15 HELX_P HELX_P11 11 ARG B 91 ? LEU B 96 ? ARG B 91 LEU B 96 1 ? 6 HELX_P HELX_P12 12 ASP B 97 ? LEU B 99 ? ASP B 97 LEU B 99 5 ? 3 HELX_P HELX_P13 13 ASN B 111 ? LYS B 122 ? ASN B 111 LYS B 122 1 ? 12 HELX_P HELX_P14 14 VAL B 133 ? ARG B 147 ? VAL B 133 ARG B 147 1 ? 15 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale ? ? A MSE 4 C ? ? ? 1_555 A ILE 5 N ? ? A MSE 4 A ILE 5 1_555 ? ? ? ? ? ? ? 1.340 ? covale2 covale ? ? A GLY 48 C ? ? ? 1_555 A MSE 49 N ? ? A GLY 48 A MSE 49 1_555 ? ? ? ? ? ? ? 1.322 ? covale3 covale ? ? A MSE 49 C ? ? ? 1_555 A THR 50 N ? ? A MSE 49 A THR 50 1_555 ? ? ? ? ? ? ? 1.323 ? covale4 covale ? ? A HIS 168 C ? ? ? 1_555 A MSE 169 N ? ? A HIS 168 A MSE 169 1_555 ? ? ? ? ? ? ? 1.308 ? covale5 covale ? ? A MSE 169 C ? ? ? 1_555 A PHE 170 N ? ? A MSE 169 A PHE 170 1_555 ? ? ? ? ? ? ? 1.339 ? covale6 covale ? ? B MSE 4 C ? ? ? 1_555 B ILE 5 N ? ? B MSE 4 B ILE 5 1_555 ? ? ? ? ? ? ? 1.332 ? covale7 covale ? ? B GLY 48 C ? ? ? 1_555 B MSE 49 N ? ? B GLY 48 B MSE 49 1_555 ? ? ? ? ? ? ? 1.309 ? covale8 covale ? ? B MSE 49 C ? ? ? 1_555 B THR 50 N ? ? B MSE 49 B THR 50 1_555 ? ? ? ? ? ? ? 1.326 ? covale9 covale ? ? B HIS 168 C ? ? ? 1_555 B MSE 169 N ? ? B HIS 168 B MSE 169 1_555 ? ? ? ? ? ? ? 1.311 ? covale10 covale ? ? B MSE 169 C ? ? ? 1_555 B PHE 170 N ? ? B MSE 169 B PHE 170 1_555 ? ? ? ? ? ? ? 1.301 ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 14 ? B ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? parallel A 2 3 ? parallel A 3 4 ? parallel A 4 5 ? parallel A 5 6 ? anti-parallel A 6 7 ? anti-parallel A 7 8 ? anti-parallel A 8 9 ? anti-parallel A 9 10 ? anti-parallel A 10 11 ? parallel A 11 12 ? parallel A 12 13 ? parallel A 13 14 ? parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 CYS A 85 ? LYS A 89 ? CYS A 85 LYS A 89 A 2 PHE A 59 ? ASP A 64 ? PHE A 59 ASP A 64 A 3 VAL A 38 ? VAL A 42 ? VAL A 38 VAL A 42 A 4 LYS A 103 ? ILE A 106 ? LYS A 103 ILE A 106 A 5 HIS A 126 ? THR A 131 ? HIS A 126 THR A 131 A 6 ILE A 176 ? VAL A 182 ? ILE A 176 VAL A 182 A 7 ASN A 150 ? ILE A 164 ? ASN A 150 ILE A 164 A 8 ASN B 150 ? ILE B 164 ? ASN B 150 ILE B 164 A 9 ILE B 176 ? VAL B 182 ? ILE B 176 VAL B 182 A 10 HIS B 126 ? THR B 131 ? HIS B 126 THR B 131 A 11 LYS B 103 ? ILE B 106 ? LYS B 103 ILE B 106 A 12 VAL B 38 ? VAL B 42 ? VAL B 38 VAL B 42 A 13 PHE B 59 ? ASP B 64 ? PHE B 59 ASP B 64 A 14 CYS B 85 ? LYS B 89 ? CYS B 85 LYS B 89 B 1 GLY A 167 ? ALA A 172 ? GLY A 167 ALA A 172 B 2 ASN A 150 ? ILE A 164 ? ASN A 150 ILE A 164 B 3 ASN B 150 ? ILE B 164 ? ASN B 150 ILE B 164 B 4 GLY B 167 ? ALA B 172 ? GLY B 167 ALA B 172 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O ILE A 88 ? O ILE A 88 N ALA A 62 ? N ALA A 62 A 2 3 O TYR A 61 ? O TYR A 61 N ASP A 41 ? N ASP A 41 A 3 4 N VAL A 42 ? N VAL A 42 O PHE A 105 ? O PHE A 105 A 4 5 N ALA A 104 ? N ALA A 104 O VAL A 128 ? O VAL A 128 A 5 6 N ALA A 129 ? N ALA A 129 O ILE A 179 ? O ILE A 179 A 6 7 O VAL A 182 ? O VAL A 182 N ASN A 150 ? N ASN A 150 A 7 8 N ASN A 155 ? N ASN A 155 O SER B 159 ? O SER B 159 A 8 9 N ASP B 152 ? N ASP B 152 O LYS B 180 ? O LYS B 180 A 9 10 O ILE B 179 ? O ILE B 179 N ALA B 129 ? N ALA B 129 A 10 11 O VAL B 128 ? O VAL B 128 N ILE B 106 ? N ILE B 106 A 11 12 O PHE B 105 ? O PHE B 105 N VAL B 40 ? N VAL B 40 A 12 13 N ASP B 41 ? N ASP B 41 O TYR B 61 ? O TYR B 61 A 13 14 N ALA B 62 ? N ALA B 62 O ILE B 88 ? O ILE B 88 B 1 2 O LEU A 171 ? O LEU A 171 N TYR A 160 ? N TYR A 160 B 2 3 N ASN A 155 ? N ASN A 155 O SER B 159 ? O SER B 159 B 3 4 N LYS B 162 ? N LYS B 162 O MSE B 169 ? O MSE B 169 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 8 'BINDING SITE FOR RESIDUE SO4 A 1001' AC2 Software ? ? ? ? 6 'BINDING SITE FOR RESIDUE SO4 B 1002' AC3 Software ? ? ? ? 7 'BINDING SITE FOR RESIDUE MES B 2001' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 8 PRO A 17 ? PRO A 17 . ? 1_555 ? 2 AC1 8 ILE A 18 ? ILE A 18 . ? 1_555 ? 3 AC1 8 THR A 19 ? THR A 19 . ? 1_555 ? 4 AC1 8 SER A 46 ? SER A 46 . ? 1_555 ? 5 AC1 8 GLY A 47 ? GLY A 47 . ? 1_555 ? 6 AC1 8 GLY A 48 ? GLY A 48 . ? 1_555 ? 7 AC1 8 MSE A 49 ? MSE A 49 . ? 1_555 ? 8 AC1 8 HOH F . ? HOH A 1056 . ? 1_555 ? 9 AC2 6 ILE B 18 ? ILE B 18 . ? 1_555 ? 10 AC2 6 THR B 19 ? THR B 19 . ? 1_555 ? 11 AC2 6 SER B 46 ? SER B 46 . ? 1_555 ? 12 AC2 6 GLY B 47 ? GLY B 47 . ? 1_555 ? 13 AC2 6 GLY B 48 ? GLY B 48 . ? 1_555 ? 14 AC2 6 MSE B 49 ? MSE B 49 . ? 1_555 ? 15 AC3 7 ASN A 155 ? ASN A 155 . ? 8_665 ? 16 AC3 7 PHE A 170 ? PHE A 170 . ? 1_555 ? 17 AC3 7 THR B 131 ? THR B 131 . ? 1_555 ? 18 AC3 7 LEU B 134 ? LEU B 134 . ? 1_555 ? 19 AC3 7 ASN B 155 ? ASN B 155 . ? 1_555 ? 20 AC3 7 PRO B 175 ? PRO B 175 . ? 1_555 ? 21 AC3 7 THR B 177 ? THR B 177 . ? 1_555 ? # _database_PDB_matrix.entry_id 2YXD _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2YXD _atom_sites.fract_transf_matrix[1][1] 0.010702 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.010702 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.012339 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MSE 1 1 ? ? ? A . n A 1 2 LYS 2 2 ? ? ? A . n A 1 3 TYR 3 3 ? ? ? A . n A 1 4 MSE 4 4 4 MSE ALA A . n A 1 5 ILE 5 5 5 ILE ILE A . n A 1 6 PRO 6 6 6 PRO PRO A . n A 1 7 ASP 7 7 7 ASP ASP A . n A 1 8 GLU 8 8 8 GLU GLU A . n A 1 9 GLU 9 9 9 GLU GLU A . n A 1 10 PHE 10 10 10 PHE PHE A . n A 1 11 ILE 11 11 11 ILE ILE A . n A 1 12 ARG 12 12 12 ARG ALA A . n A 1 13 ARG 13 13 13 ARG ALA A . n A 1 14 GLU 14 14 14 GLU ALA A . n A 1 15 GLY 15 15 15 GLY GLY A . n A 1 16 VAL 16 16 16 VAL VAL A . n A 1 17 PRO 17 17 17 PRO PRO A . n A 1 18 ILE 18 18 18 ILE ILE A . n A 1 19 THR 19 19 19 THR THR A . n A 1 20 LYS 20 20 20 LYS LYS A . n A 1 21 GLU 21 21 21 GLU GLU A . n A 1 22 GLU 22 22 22 GLU GLU A . n A 1 23 ILE 23 23 23 ILE ILE A . n A 1 24 ARG 24 24 24 ARG ARG A . n A 1 25 ALA 25 25 25 ALA ALA A . n A 1 26 VAL 26 26 26 VAL VAL A . n A 1 27 SER 27 27 27 SER SER A . n A 1 28 ILE 28 28 28 ILE ILE A . n A 1 29 GLY 29 29 29 GLY GLY A . n A 1 30 LYS 30 30 30 LYS LYS A . n A 1 31 LEU 31 31 31 LEU LEU A . n A 1 32 ASN 32 32 32 ASN ASN A . n A 1 33 LEU 33 33 33 LEU LEU A . n A 1 34 ASN 34 34 34 ASN ASN A . n A 1 35 LYS 35 35 35 LYS LYS A . n A 1 36 ASP 36 36 36 ASP ASP A . n A 1 37 ASP 37 37 37 ASP ASP A . n A 1 38 VAL 38 38 38 VAL VAL A . n A 1 39 VAL 39 39 39 VAL VAL A . n A 1 40 VAL 40 40 40 VAL VAL A . n A 1 41 ASP 41 41 41 ASP ASP A . n A 1 42 VAL 42 42 42 VAL VAL A . n A 1 43 GLY 43 43 43 GLY GLY A . n A 1 44 CYS 44 44 44 CYS CYS A . n A 1 45 GLY 45 45 45 GLY GLY A . n A 1 46 SER 46 46 46 SER SER A . n A 1 47 GLY 47 47 47 GLY GLY A . n A 1 48 GLY 48 48 48 GLY GLY A . n A 1 49 MSE 49 49 49 MSE MSE A . n A 1 50 THR 50 50 50 THR THR A . n A 1 51 VAL 51 51 51 VAL VAL A . n A 1 52 GLU 52 52 52 GLU GLU A . n A 1 53 ILE 53 53 53 ILE ILE A . n A 1 54 ALA 54 54 54 ALA ALA A . n A 1 55 LYS 55 55 55 LYS LYS A . n A 1 56 ARG 56 56 56 ARG ARG A . n A 1 57 CYS 57 57 57 CYS CYS A . n A 1 58 LYS 58 58 58 LYS LYS A . n A 1 59 PHE 59 59 59 PHE PHE A . n A 1 60 VAL 60 60 60 VAL VAL A . n A 1 61 TYR 61 61 61 TYR TYR A . n A 1 62 ALA 62 62 62 ALA ALA A . n A 1 63 ILE 63 63 63 ILE ILE A . n A 1 64 ASP 64 64 64 ASP ASP A . n A 1 65 TYR 65 65 65 TYR ALA A . n A 1 66 LEU 66 66 66 LEU ALA A . n A 1 67 ASP 67 67 67 ASP ASP A . n A 1 68 GLY 68 68 68 GLY GLY A . n A 1 69 ALA 69 69 69 ALA ALA A . n A 1 70 ILE 70 70 70 ILE ILE A . n A 1 71 GLU 71 71 71 GLU GLU A . n A 1 72 VAL 72 72 72 VAL VAL A . n A 1 73 THR 73 73 73 THR THR A . n A 1 74 LYS 74 74 74 LYS LYS A . n A 1 75 GLN 75 75 75 GLN GLN A . n A 1 76 ASN 76 76 76 ASN ASN A . n A 1 77 LEU 77 77 77 LEU LEU A . n A 1 78 ALA 78 78 78 ALA ALA A . n A 1 79 LYS 79 79 79 LYS LYS A . n A 1 80 PHE 80 80 80 PHE PHE A . n A 1 81 ASN 81 81 81 ASN ASN A . n A 1 82 ILE 82 82 82 ILE ILE A . n A 1 83 LYS 83 83 83 LYS LYS A . n A 1 84 ASN 84 84 84 ASN ASN A . n A 1 85 CYS 85 85 85 CYS CYS A . n A 1 86 GLN 86 86 86 GLN GLN A . n A 1 87 ILE 87 87 87 ILE ILE A . n A 1 88 ILE 88 88 88 ILE ILE A . n A 1 89 LYS 89 89 89 LYS LYS A . n A 1 90 GLY 90 90 90 GLY GLY A . n A 1 91 ARG 91 91 91 ARG ARG A . n A 1 92 ALA 92 92 92 ALA ALA A . n A 1 93 GLU 93 93 93 GLU GLU A . n A 1 94 ASP 94 94 94 ASP ASP A . n A 1 95 VAL 95 95 95 VAL VAL A . n A 1 96 LEU 96 96 96 LEU LEU A . n A 1 97 ASP 97 97 97 ASP ASP A . n A 1 98 LYS 98 98 98 LYS LYS A . n A 1 99 LEU 99 99 99 LEU LEU A . n A 1 100 GLU 100 100 100 GLU GLU A . n A 1 101 PHE 101 101 101 PHE PHE A . n A 1 102 ASN 102 102 102 ASN ASN A . n A 1 103 LYS 103 103 103 LYS LYS A . n A 1 104 ALA 104 104 104 ALA ALA A . n A 1 105 PHE 105 105 105 PHE PHE A . n A 1 106 ILE 106 106 106 ILE ILE A . n A 1 107 GLY 107 107 107 GLY GLY A . n A 1 108 GLY 108 108 108 GLY GLY A . n A 1 109 THR 109 109 109 THR THR A . n A 1 110 LYS 110 110 110 LYS ALA A . n A 1 111 ASN 111 111 111 ASN ASN A . n A 1 112 ILE 112 112 112 ILE ILE A . n A 1 113 GLU 113 113 113 GLU GLU A . n A 1 114 LYS 114 114 114 LYS LYS A . n A 1 115 ILE 115 115 115 ILE ILE A . n A 1 116 ILE 116 116 116 ILE ILE A . n A 1 117 GLU 117 117 117 GLU GLU A . n A 1 118 ILE 118 118 118 ILE ILE A . n A 1 119 LEU 119 119 119 LEU LEU A . n A 1 120 ASP 120 120 120 ASP ASP A . n A 1 121 LYS 121 121 121 LYS LYS A . n A 1 122 LYS 122 122 122 LYS LYS A . n A 1 123 LYS 123 123 123 LYS LYS A . n A 1 124 ILE 124 124 124 ILE ILE A . n A 1 125 ASN 125 125 125 ASN ASN A . n A 1 126 HIS 126 126 126 HIS HIS A . n A 1 127 ILE 127 127 127 ILE ILE A . n A 1 128 VAL 128 128 128 VAL VAL A . n A 1 129 ALA 129 129 129 ALA ALA A . n A 1 130 ASN 130 130 130 ASN ASN A . n A 1 131 THR 131 131 131 THR THR A . n A 1 132 ILE 132 132 132 ILE ILE A . n A 1 133 VAL 133 133 133 VAL VAL A . n A 1 134 LEU 134 134 134 LEU LEU A . n A 1 135 GLU 135 135 135 GLU GLU A . n A 1 136 ASN 136 136 136 ASN ASN A . n A 1 137 ALA 137 137 137 ALA ALA A . n A 1 138 ALA 138 138 138 ALA ALA A . n A 1 139 LYS 139 139 139 LYS LYS A . n A 1 140 ILE 140 140 140 ILE ILE A . n A 1 141 ILE 141 141 141 ILE ILE A . n A 1 142 ASN 142 142 142 ASN ASN A . n A 1 143 GLU 143 143 143 GLU GLU A . n A 1 144 PHE 144 144 144 PHE PHE A . n A 1 145 GLU 145 145 145 GLU GLU A . n A 1 146 SER 146 146 146 SER SER A . n A 1 147 ARG 147 147 147 ARG ARG A . n A 1 148 GLY 148 148 148 GLY GLY A . n A 1 149 TYR 149 149 149 TYR TYR A . n A 1 150 ASN 150 150 150 ASN ASN A . n A 1 151 VAL 151 151 151 VAL VAL A . n A 1 152 ASP 152 152 152 ASP ASP A . n A 1 153 ALA 153 153 153 ALA ALA A . n A 1 154 VAL 154 154 154 VAL VAL A . n A 1 155 ASN 155 155 155 ASN ASN A . n A 1 156 VAL 156 156 156 VAL VAL A . n A 1 157 PHE 157 157 157 PHE PHE A . n A 1 158 ILE 158 158 158 ILE ILE A . n A 1 159 SER 159 159 159 SER SER A . n A 1 160 TYR 160 160 160 TYR TYR A . n A 1 161 ALA 161 161 161 ALA ALA A . n A 1 162 LYS 162 162 162 LYS LYS A . n A 1 163 LYS 163 163 163 LYS LYS A . n A 1 164 ILE 164 164 164 ILE ILE A . n A 1 165 PRO 165 165 165 PRO PRO A . n A 1 166 SER 166 166 166 SER SER A . n A 1 167 GLY 167 167 167 GLY GLY A . n A 1 168 HIS 168 168 168 HIS HIS A . n A 1 169 MSE 169 169 169 MSE MSE A . n A 1 170 PHE 170 170 170 PHE PHE A . n A 1 171 LEU 171 171 171 LEU LEU A . n A 1 172 ALA 172 172 172 ALA ALA A . n A 1 173 LYS 173 173 173 LYS LYS A . n A 1 174 ASN 174 174 174 ASN ASN A . n A 1 175 PRO 175 175 175 PRO PRO A . n A 1 176 ILE 176 176 176 ILE ILE A . n A 1 177 THR 177 177 177 THR THR A . n A 1 178 ILE 178 178 178 ILE ILE A . n A 1 179 ILE 179 179 179 ILE ILE A . n A 1 180 LYS 180 180 180 LYS LYS A . n A 1 181 ALA 181 181 181 ALA ALA A . n A 1 182 VAL 182 182 182 VAL VAL A . n A 1 183 ARG 183 183 183 ARG ARG A . n B 1 1 MSE 1 1 ? ? ? B . n B 1 2 LYS 2 2 ? ? ? B . n B 1 3 TYR 3 3 ? ? ? B . n B 1 4 MSE 4 4 4 MSE ALA B . n B 1 5 ILE 5 5 5 ILE ILE B . n B 1 6 PRO 6 6 6 PRO PRO B . n B 1 7 ASP 7 7 7 ASP ASP B . n B 1 8 GLU 8 8 8 GLU GLU B . n B 1 9 GLU 9 9 9 GLU GLU B . n B 1 10 PHE 10 10 10 PHE PHE B . n B 1 11 ILE 11 11 11 ILE ILE B . n B 1 12 ARG 12 12 12 ARG ALA B . n B 1 13 ARG 13 13 13 ARG ALA B . n B 1 14 GLU 14 14 14 GLU GLU B . n B 1 15 GLY 15 15 15 GLY GLY B . n B 1 16 VAL 16 16 16 VAL VAL B . n B 1 17 PRO 17 17 17 PRO PRO B . n B 1 18 ILE 18 18 18 ILE ILE B . n B 1 19 THR 19 19 19 THR THR B . n B 1 20 LYS 20 20 20 LYS LYS B . n B 1 21 GLU 21 21 21 GLU GLU B . n B 1 22 GLU 22 22 22 GLU GLU B . n B 1 23 ILE 23 23 23 ILE ILE B . n B 1 24 ARG 24 24 24 ARG ARG B . n B 1 25 ALA 25 25 25 ALA ALA B . n B 1 26 VAL 26 26 26 VAL VAL B . n B 1 27 SER 27 27 27 SER SER B . n B 1 28 ILE 28 28 28 ILE ILE B . n B 1 29 GLY 29 29 29 GLY GLY B . n B 1 30 LYS 30 30 30 LYS LYS B . n B 1 31 LEU 31 31 31 LEU LEU B . n B 1 32 ASN 32 32 32 ASN ASN B . n B 1 33 LEU 33 33 33 LEU LEU B . n B 1 34 ASN 34 34 34 ASN ASN B . n B 1 35 LYS 35 35 35 LYS LYS B . n B 1 36 ASP 36 36 36 ASP ASP B . n B 1 37 ASP 37 37 37 ASP ASP B . n B 1 38 VAL 38 38 38 VAL VAL B . n B 1 39 VAL 39 39 39 VAL VAL B . n B 1 40 VAL 40 40 40 VAL VAL B . n B 1 41 ASP 41 41 41 ASP ASP B . n B 1 42 VAL 42 42 42 VAL VAL B . n B 1 43 GLY 43 43 43 GLY GLY B . n B 1 44 CYS 44 44 44 CYS CYS B . n B 1 45 GLY 45 45 45 GLY GLY B . n B 1 46 SER 46 46 46 SER SER B . n B 1 47 GLY 47 47 47 GLY GLY B . n B 1 48 GLY 48 48 48 GLY GLY B . n B 1 49 MSE 49 49 49 MSE MSE B . n B 1 50 THR 50 50 50 THR THR B . n B 1 51 VAL 51 51 51 VAL VAL B . n B 1 52 GLU 52 52 52 GLU GLU B . n B 1 53 ILE 53 53 53 ILE ILE B . n B 1 54 ALA 54 54 54 ALA ALA B . n B 1 55 LYS 55 55 55 LYS LYS B . n B 1 56 ARG 56 56 56 ARG ARG B . n B 1 57 CYS 57 57 57 CYS CYS B . n B 1 58 LYS 58 58 58 LYS LYS B . n B 1 59 PHE 59 59 59 PHE PHE B . n B 1 60 VAL 60 60 60 VAL VAL B . n B 1 61 TYR 61 61 61 TYR TYR B . n B 1 62 ALA 62 62 62 ALA ALA B . n B 1 63 ILE 63 63 63 ILE ILE B . n B 1 64 ASP 64 64 64 ASP ASP B . n B 1 65 TYR 65 65 65 TYR ALA B . n B 1 66 LEU 66 66 66 LEU LEU B . n B 1 67 ASP 67 67 67 ASP ASP B . n B 1 68 GLY 68 68 68 GLY GLY B . n B 1 69 ALA 69 69 69 ALA ALA B . n B 1 70 ILE 70 70 70 ILE ILE B . n B 1 71 GLU 71 71 71 GLU GLU B . n B 1 72 VAL 72 72 72 VAL VAL B . n B 1 73 THR 73 73 73 THR THR B . n B 1 74 LYS 74 74 74 LYS LYS B . n B 1 75 GLN 75 75 75 GLN GLN B . n B 1 76 ASN 76 76 76 ASN ASN B . n B 1 77 LEU 77 77 77 LEU LEU B . n B 1 78 ALA 78 78 78 ALA ALA B . n B 1 79 LYS 79 79 79 LYS LYS B . n B 1 80 PHE 80 80 80 PHE PHE B . n B 1 81 ASN 81 81 81 ASN ASN B . n B 1 82 ILE 82 82 82 ILE ILE B . n B 1 83 LYS 83 83 83 LYS LYS B . n B 1 84 ASN 84 84 84 ASN ASN B . n B 1 85 CYS 85 85 85 CYS CYS B . n B 1 86 GLN 86 86 86 GLN GLN B . n B 1 87 ILE 87 87 87 ILE ILE B . n B 1 88 ILE 88 88 88 ILE ILE B . n B 1 89 LYS 89 89 89 LYS LYS B . n B 1 90 GLY 90 90 90 GLY GLY B . n B 1 91 ARG 91 91 91 ARG ARG B . n B 1 92 ALA 92 92 92 ALA ALA B . n B 1 93 GLU 93 93 93 GLU GLU B . n B 1 94 ASP 94 94 94 ASP ASP B . n B 1 95 VAL 95 95 95 VAL VAL B . n B 1 96 LEU 96 96 96 LEU LEU B . n B 1 97 ASP 97 97 97 ASP ASP B . n B 1 98 LYS 98 98 98 LYS LYS B . n B 1 99 LEU 99 99 99 LEU LEU B . n B 1 100 GLU 100 100 100 GLU GLU B . n B 1 101 PHE 101 101 101 PHE PHE B . n B 1 102 ASN 102 102 102 ASN ASN B . n B 1 103 LYS 103 103 103 LYS LYS B . n B 1 104 ALA 104 104 104 ALA ALA B . n B 1 105 PHE 105 105 105 PHE PHE B . n B 1 106 ILE 106 106 106 ILE ILE B . n B 1 107 GLY 107 107 107 GLY GLY B . n B 1 108 GLY 108 108 108 GLY GLY B . n B 1 109 THR 109 109 109 THR THR B . n B 1 110 LYS 110 110 110 LYS ALA B . n B 1 111 ASN 111 111 111 ASN ASN B . n B 1 112 ILE 112 112 112 ILE ILE B . n B 1 113 GLU 113 113 113 GLU GLU B . n B 1 114 LYS 114 114 114 LYS LYS B . n B 1 115 ILE 115 115 115 ILE ILE B . n B 1 116 ILE 116 116 116 ILE ILE B . n B 1 117 GLU 117 117 117 GLU GLU B . n B 1 118 ILE 118 118 118 ILE ILE B . n B 1 119 LEU 119 119 119 LEU LEU B . n B 1 120 ASP 120 120 120 ASP ASP B . n B 1 121 LYS 121 121 121 LYS LYS B . n B 1 122 LYS 122 122 122 LYS LYS B . n B 1 123 LYS 123 123 123 LYS LYS B . n B 1 124 ILE 124 124 124 ILE ILE B . n B 1 125 ASN 125 125 125 ASN ASN B . n B 1 126 HIS 126 126 126 HIS HIS B . n B 1 127 ILE 127 127 127 ILE ILE B . n B 1 128 VAL 128 128 128 VAL VAL B . n B 1 129 ALA 129 129 129 ALA ALA B . n B 1 130 ASN 130 130 130 ASN ASN B . n B 1 131 THR 131 131 131 THR THR B . n B 1 132 ILE 132 132 132 ILE ILE B . n B 1 133 VAL 133 133 133 VAL VAL B . n B 1 134 LEU 134 134 134 LEU LEU B . n B 1 135 GLU 135 135 135 GLU GLU B . n B 1 136 ASN 136 136 136 ASN ASN B . n B 1 137 ALA 137 137 137 ALA ALA B . n B 1 138 ALA 138 138 138 ALA ALA B . n B 1 139 LYS 139 139 139 LYS LYS B . n B 1 140 ILE 140 140 140 ILE ILE B . n B 1 141 ILE 141 141 141 ILE ILE B . n B 1 142 ASN 142 142 142 ASN ASN B . n B 1 143 GLU 143 143 143 GLU GLU B . n B 1 144 PHE 144 144 144 PHE PHE B . n B 1 145 GLU 145 145 145 GLU GLU B . n B 1 146 SER 146 146 146 SER SER B . n B 1 147 ARG 147 147 147 ARG ARG B . n B 1 148 GLY 148 148 148 GLY GLY B . n B 1 149 TYR 149 149 149 TYR TYR B . n B 1 150 ASN 150 150 150 ASN ASN B . n B 1 151 VAL 151 151 151 VAL VAL B . n B 1 152 ASP 152 152 152 ASP ASP B . n B 1 153 ALA 153 153 153 ALA ALA B . n B 1 154 VAL 154 154 154 VAL VAL B . n B 1 155 ASN 155 155 155 ASN ASN B . n B 1 156 VAL 156 156 156 VAL VAL B . n B 1 157 PHE 157 157 157 PHE PHE B . n B 1 158 ILE 158 158 158 ILE ILE B . n B 1 159 SER 159 159 159 SER SER B . n B 1 160 TYR 160 160 160 TYR TYR B . n B 1 161 ALA 161 161 161 ALA ALA B . n B 1 162 LYS 162 162 162 LYS LYS B . n B 1 163 LYS 163 163 163 LYS LYS B . n B 1 164 ILE 164 164 164 ILE ILE B . n B 1 165 PRO 165 165 165 PRO PRO B . n B 1 166 SER 166 166 166 SER SER B . n B 1 167 GLY 167 167 167 GLY GLY B . n B 1 168 HIS 168 168 168 HIS HIS B . n B 1 169 MSE 169 169 169 MSE MSE B . n B 1 170 PHE 170 170 170 PHE PHE B . n B 1 171 LEU 171 171 171 LEU LEU B . n B 1 172 ALA 172 172 172 ALA ALA B . n B 1 173 LYS 173 173 173 LYS LYS B . n B 1 174 ASN 174 174 174 ASN ASN B . n B 1 175 PRO 175 175 175 PRO PRO B . n B 1 176 ILE 176 176 176 ILE ILE B . n B 1 177 THR 177 177 177 THR THR B . n B 1 178 ILE 178 178 178 ILE ILE B . n B 1 179 ILE 179 179 179 ILE ILE B . n B 1 180 LYS 180 180 180 LYS LYS B . n B 1 181 ALA 181 181 181 ALA ALA B . n B 1 182 VAL 182 182 182 VAL VAL B . n B 1 183 ARG 183 183 183 ARG ARG B . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'NPPSFA, National Project on Protein Structural and Functional Analyses' _pdbx_SG_project.full_name_of_center 'RIKEN Structural Genomics/Proteomics Initiative' _pdbx_SG_project.initial_of_center RSGI # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SO4 1 1001 1 SO4 SO4 A . D 2 SO4 1 1002 2 SO4 SO4 B . E 3 MES 1 2001 1 MES MES B . F 4 HOH 1 1002 2 HOH HOH A . F 4 HOH 2 1003 3 HOH HOH A . F 4 HOH 3 1004 8 HOH HOH A . F 4 HOH 4 1005 9 HOH HOH A . F 4 HOH 5 1006 10 HOH HOH A . F 4 HOH 6 1007 11 HOH HOH A . F 4 HOH 7 1008 14 HOH HOH A . F 4 HOH 8 1009 15 HOH HOH A . F 4 HOH 9 1010 16 HOH HOH A . F 4 HOH 10 1011 17 HOH HOH A . F 4 HOH 11 1012 19 HOH HOH A . F 4 HOH 12 1013 20 HOH HOH A . F 4 HOH 13 1014 24 HOH HOH A . F 4 HOH 14 1015 25 HOH HOH A . F 4 HOH 15 1016 26 HOH HOH A . F 4 HOH 16 1017 27 HOH HOH A . F 4 HOH 17 1018 31 HOH HOH A . F 4 HOH 18 1019 32 HOH HOH A . F 4 HOH 19 1020 34 HOH HOH A . F 4 HOH 20 1021 37 HOH HOH A . F 4 HOH 21 1022 38 HOH HOH A . F 4 HOH 22 1023 40 HOH HOH A . F 4 HOH 23 1024 41 HOH HOH A . F 4 HOH 24 1025 42 HOH HOH A . F 4 HOH 25 1026 45 HOH HOH A . F 4 HOH 26 1027 47 HOH HOH A . F 4 HOH 27 1028 48 HOH HOH A . F 4 HOH 28 1029 50 HOH HOH A . F 4 HOH 29 1030 51 HOH HOH A . F 4 HOH 30 1031 52 HOH HOH A . F 4 HOH 31 1032 53 HOH HOH A . F 4 HOH 32 1033 54 HOH HOH A . F 4 HOH 33 1034 56 HOH HOH A . F 4 HOH 34 1035 57 HOH HOH A . F 4 HOH 35 1036 58 HOH HOH A . F 4 HOH 36 1037 61 HOH HOH A . F 4 HOH 37 1038 65 HOH HOH A . F 4 HOH 38 1039 68 HOH HOH A . F 4 HOH 39 1040 70 HOH HOH A . F 4 HOH 40 1041 72 HOH HOH A . F 4 HOH 41 1042 73 HOH HOH A . F 4 HOH 42 1043 74 HOH HOH A . F 4 HOH 43 1044 76 HOH HOH A . F 4 HOH 44 1045 78 HOH HOH A . F 4 HOH 45 1046 79 HOH HOH A . F 4 HOH 46 1047 83 HOH HOH A . F 4 HOH 47 1048 87 HOH HOH A . F 4 HOH 48 1049 88 HOH HOH A . F 4 HOH 49 1050 91 HOH HOH A . F 4 HOH 50 1051 94 HOH HOH A . F 4 HOH 51 1052 95 HOH HOH A . F 4 HOH 52 1053 96 HOH HOH A . F 4 HOH 53 1054 97 HOH HOH A . F 4 HOH 54 1055 98 HOH HOH A . F 4 HOH 55 1056 102 HOH HOH A . F 4 HOH 56 1057 103 HOH HOH A . F 4 HOH 57 1058 105 HOH HOH A . F 4 HOH 58 1059 106 HOH HOH A . F 4 HOH 59 1060 108 HOH HOH A . F 4 HOH 60 1061 109 HOH HOH A . F 4 HOH 61 1062 110 HOH HOH A . G 4 HOH 1 2002 1 HOH HOH B . G 4 HOH 2 2003 4 HOH HOH B . G 4 HOH 3 2004 5 HOH HOH B . G 4 HOH 4 2005 6 HOH HOH B . G 4 HOH 5 2006 7 HOH HOH B . G 4 HOH 6 2007 12 HOH HOH B . G 4 HOH 7 2008 13 HOH HOH B . G 4 HOH 8 2009 18 HOH HOH B . G 4 HOH 9 2010 21 HOH HOH B . G 4 HOH 10 2011 22 HOH HOH B . G 4 HOH 11 2012 23 HOH HOH B . G 4 HOH 12 2013 29 HOH HOH B . G 4 HOH 13 2014 30 HOH HOH B . G 4 HOH 14 2015 33 HOH HOH B . G 4 HOH 15 2016 35 HOH HOH B . G 4 HOH 16 2017 36 HOH HOH B . G 4 HOH 17 2018 39 HOH HOH B . G 4 HOH 18 2019 43 HOH HOH B . G 4 HOH 19 2020 44 HOH HOH B . G 4 HOH 20 2021 46 HOH HOH B . G 4 HOH 21 2022 49 HOH HOH B . G 4 HOH 22 2023 55 HOH HOH B . G 4 HOH 23 2024 59 HOH HOH B . G 4 HOH 24 2025 60 HOH HOH B . G 4 HOH 25 2026 62 HOH HOH B . G 4 HOH 26 2027 63 HOH HOH B . G 4 HOH 27 2028 64 HOH HOH B . G 4 HOH 28 2029 66 HOH HOH B . G 4 HOH 29 2030 67 HOH HOH B . G 4 HOH 30 2031 69 HOH HOH B . G 4 HOH 31 2032 71 HOH HOH B . G 4 HOH 32 2033 75 HOH HOH B . G 4 HOH 33 2034 77 HOH HOH B . G 4 HOH 34 2035 80 HOH HOH B . G 4 HOH 35 2036 81 HOH HOH B . G 4 HOH 36 2037 82 HOH HOH B . G 4 HOH 37 2038 84 HOH HOH B . G 4 HOH 38 2039 85 HOH HOH B . G 4 HOH 39 2040 86 HOH HOH B . G 4 HOH 40 2041 89 HOH HOH B . G 4 HOH 41 2042 90 HOH HOH B . G 4 HOH 42 2043 92 HOH HOH B . G 4 HOH 43 2044 93 HOH HOH B . G 4 HOH 44 2045 99 HOH HOH B . G 4 HOH 45 2046 104 HOH HOH B . G 4 HOH 46 2047 107 HOH HOH B . G 4 HOH 47 2048 111 HOH HOH B . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 4 A MSE 4 ? MET SELENOMETHIONINE 2 A MSE 49 A MSE 49 ? MET SELENOMETHIONINE 3 A MSE 169 A MSE 169 ? MET SELENOMETHIONINE 4 B MSE 4 B MSE 4 ? MET SELENOMETHIONINE 5 B MSE 49 B MSE 49 ? MET SELENOMETHIONINE 6 B MSE 169 B MSE 169 ? MET SELENOMETHIONINE # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_and_software_defined_assembly PQS dimeric 2 2 software_defined_assembly PISA tetrameric 4 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,B,C,D,E,F,G 2 1,2 A,B,C,D,E,F,G # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 2 'ABSA (A^2)' 9930 ? 2 MORE -108 ? 2 'SSA (A^2)' 28040 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 8_665 -y+1,-x+1,-z+1/2 0.0000000000 -1.0000000000 0.0000000000 93.4420000000 -1.0000000000 0.0000000000 0.0000000000 93.4420000000 0.0000000000 0.0000000000 -1.0000000000 40.5210000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2007-10-30 2 'Structure model' 1 1 2011-07-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Derived calculations' 2 2 'Structure model' 'Source and taxonomy' 3 2 'Structure model' 'Version format compliance' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal REFMAC refinement 5.2.0019 ? 1 ADSC 'data collection' Quantum ? 2 HKL-2000 'data reduction' . ? 3 SCALEPACK 'data scaling' . ? 4 SOLVE phasing . ? 5 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 CG A GLU 21 ? ? CD A GLU 21 ? ? 1.618 1.515 0.103 0.015 N 2 1 CB A VAL 60 ? ? CG2 A VAL 60 ? ? 1.384 1.524 -0.140 0.021 N 3 1 CB A VAL 128 ? ? CG1 A VAL 128 ? ? 1.673 1.524 0.149 0.021 N 4 1 CB B GLU 145 ? ? CG B GLU 145 ? ? 1.829 1.517 0.312 0.019 N 5 1 CD B GLU 145 ? ? OE2 B GLU 145 ? ? 1.420 1.252 0.168 0.011 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 CB A ASP 64 ? ? CG A ASP 64 ? ? OD1 A ASP 64 ? ? 125.33 118.30 7.03 0.90 N 2 1 N A THR 109 ? ? CA A THR 109 ? ? C A THR 109 ? ? 129.86 111.00 18.86 2.70 N 3 1 CB B ASP 7 ? ? CG B ASP 7 ? ? OD1 B ASP 7 ? ? 123.97 118.30 5.67 0.90 N 4 1 NE B ARG 24 ? ? CZ B ARG 24 ? ? NH1 B ARG 24 ? ? 117.27 120.30 -3.03 0.50 N 5 1 CB B ASP 67 ? ? CG B ASP 67 ? ? OD1 B ASP 67 ? ? 123.86 118.30 5.56 0.90 N 6 1 CB B ASP 67 ? ? CG B ASP 67 ? ? OD2 B ASP 67 ? ? 111.99 118.30 -6.31 0.90 N 7 1 CG B GLU 145 ? ? CD B GLU 145 ? ? OE1 B GLU 145 ? ? 97.80 118.30 -20.50 2.00 N 8 1 CG B GLU 145 ? ? CD B GLU 145 ? ? OE2 B GLU 145 ? ? 136.19 118.30 17.89 2.00 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ILE A 5 ? ? 162.80 -44.71 2 1 PRO A 6 ? ? -16.80 155.44 3 1 THR A 109 ? ? 41.40 139.52 4 1 ASN A 111 ? ? 61.85 61.32 5 1 ASN A 174 ? ? 23.20 123.27 6 1 ASP B 7 ? ? -50.02 -105.63 7 1 GLU B 8 ? ? -153.35 22.81 8 1 GLU B 9 ? ? -78.88 25.49 9 1 GLU B 21 ? ? -21.34 -50.45 10 1 ASN B 84 ? ? -92.83 53.95 11 1 PHE B 101 ? ? 179.24 160.57 12 1 THR B 109 ? ? -170.28 141.21 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A MSE 4 ? CG ? A MSE 4 CG 2 1 Y 1 A MSE 4 ? SE ? A MSE 4 SE 3 1 Y 1 A MSE 4 ? CE ? A MSE 4 CE 4 1 Y 1 A ARG 12 ? CG ? A ARG 12 CG 5 1 Y 1 A ARG 12 ? CD ? A ARG 12 CD 6 1 Y 1 A ARG 12 ? NE ? A ARG 12 NE 7 1 Y 1 A ARG 12 ? CZ ? A ARG 12 CZ 8 1 Y 1 A ARG 12 ? NH1 ? A ARG 12 NH1 9 1 Y 1 A ARG 12 ? NH2 ? A ARG 12 NH2 10 1 Y 1 A ARG 13 ? CG ? A ARG 13 CG 11 1 Y 1 A ARG 13 ? CD ? A ARG 13 CD 12 1 Y 1 A ARG 13 ? NE ? A ARG 13 NE 13 1 Y 1 A ARG 13 ? CZ ? A ARG 13 CZ 14 1 Y 1 A ARG 13 ? NH1 ? A ARG 13 NH1 15 1 Y 1 A ARG 13 ? NH2 ? A ARG 13 NH2 16 1 Y 1 A GLU 14 ? CG ? A GLU 14 CG 17 1 Y 1 A GLU 14 ? CD ? A GLU 14 CD 18 1 Y 1 A GLU 14 ? OE1 ? A GLU 14 OE1 19 1 Y 1 A GLU 14 ? OE2 ? A GLU 14 OE2 20 1 Y 1 A TYR 65 ? CG ? A TYR 65 CG 21 1 Y 1 A TYR 65 ? CD1 ? A TYR 65 CD1 22 1 Y 1 A TYR 65 ? CD2 ? A TYR 65 CD2 23 1 Y 1 A TYR 65 ? CE1 ? A TYR 65 CE1 24 1 Y 1 A TYR 65 ? CE2 ? A TYR 65 CE2 25 1 Y 1 A TYR 65 ? CZ ? A TYR 65 CZ 26 1 Y 1 A TYR 65 ? OH ? A TYR 65 OH 27 1 Y 1 A LEU 66 ? CG ? A LEU 66 CG 28 1 Y 1 A LEU 66 ? CD1 ? A LEU 66 CD1 29 1 Y 1 A LEU 66 ? CD2 ? A LEU 66 CD2 30 1 Y 1 A LYS 110 ? CG ? A LYS 110 CG 31 1 Y 1 A LYS 110 ? CD ? A LYS 110 CD 32 1 Y 1 A LYS 110 ? CE ? A LYS 110 CE 33 1 Y 1 A LYS 110 ? NZ ? A LYS 110 NZ 34 1 Y 1 B MSE 4 ? CG ? B MSE 4 CG 35 1 Y 1 B MSE 4 ? SE ? B MSE 4 SE 36 1 Y 1 B MSE 4 ? CE ? B MSE 4 CE 37 1 Y 1 B ARG 12 ? CG ? B ARG 12 CG 38 1 Y 1 B ARG 12 ? CD ? B ARG 12 CD 39 1 Y 1 B ARG 12 ? NE ? B ARG 12 NE 40 1 Y 1 B ARG 12 ? CZ ? B ARG 12 CZ 41 1 Y 1 B ARG 12 ? NH1 ? B ARG 12 NH1 42 1 Y 1 B ARG 12 ? NH2 ? B ARG 12 NH2 43 1 Y 1 B ARG 13 ? CG ? B ARG 13 CG 44 1 Y 1 B ARG 13 ? CD ? B ARG 13 CD 45 1 Y 1 B ARG 13 ? NE ? B ARG 13 NE 46 1 Y 1 B ARG 13 ? CZ ? B ARG 13 CZ 47 1 Y 1 B ARG 13 ? NH1 ? B ARG 13 NH1 48 1 Y 1 B ARG 13 ? NH2 ? B ARG 13 NH2 49 1 Y 1 B TYR 65 ? CG ? B TYR 65 CG 50 1 Y 1 B TYR 65 ? CD1 ? B TYR 65 CD1 51 1 Y 1 B TYR 65 ? CD2 ? B TYR 65 CD2 52 1 Y 1 B TYR 65 ? CE1 ? B TYR 65 CE1 53 1 Y 1 B TYR 65 ? CE2 ? B TYR 65 CE2 54 1 Y 1 B TYR 65 ? CZ ? B TYR 65 CZ 55 1 Y 1 B TYR 65 ? OH ? B TYR 65 OH 56 1 Y 1 B LYS 110 ? CG ? B LYS 110 CG 57 1 Y 1 B LYS 110 ? CD ? B LYS 110 CD 58 1 Y 1 B LYS 110 ? CE ? B LYS 110 CE 59 1 Y 1 B LYS 110 ? NZ ? B LYS 110 NZ # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MSE 1 ? A MSE 1 2 1 Y 1 A LYS 2 ? A LYS 2 3 1 Y 1 A TYR 3 ? A TYR 3 4 1 Y 1 B MSE 1 ? B MSE 1 5 1 Y 1 B LYS 2 ? B LYS 2 6 1 Y 1 B TYR 3 ? B TYR 3 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'SULFATE ION' SO4 3 '2-(N-MORPHOLINO)-ETHANESULFONIC ACID' MES 4 water HOH #