HEADER TRANSFERASE 26-APR-07 2YXL TITLE CRYSTAL STRUCTURE OF PH0851 COMPND MOL_ID: 1; COMPND 2 MOLECULE: 450AA LONG HYPOTHETICAL FMU PROTEIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PH0851 PROTEIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PYROCOCCUS HORIKOSHII; SOURCE 3 ORGANISM_TAXID: 70601; SOURCE 4 STRAIN: OT3; SOURCE 5 GENE: PH0851; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)-RIL; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET11A KEYWDS FMU-HOMOLOG, METHYLTRANSFERASE, STRUCTURAL GENOMICS, NPPSFA, NATIONAL KEYWDS 2 PROJECT ON PROTEIN STRUCTURAL AND FUNCTIONAL ANALYSES, RIKEN KEYWDS 3 STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE, RSGI, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR Y.HIKIDA,M.KURATANI,Y.BESSHO,R.ISHII,S.SEKINE,S.YOKOYAMA,RIKEN AUTHOR 2 STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE (RSGI) REVDAT 5 25-OCT-23 2YXL 1 REMARK REVDAT 4 13-JUL-11 2YXL 1 VERSN REVDAT 3 15-DEC-10 2YXL 1 JRNL REVDAT 2 24-FEB-09 2YXL 1 VERSN REVDAT 1 29-APR-08 2YXL 0 JRNL AUTH Y.HIKIDA,M.KURATANI,Y.BESSHO,S.SEKINE,S.YOKOYAMA JRNL TITL STRUCTURE OF AN ARCHAEAL HOMOLOGUE OF THE BACTERIAL JRNL TITL 2 FMU/RSMB/RRMB RRNA CYTOSINE 5-METHYLTRANSFERASE JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 66 1301 2010 JRNL REFN ISSN 0907-4449 JRNL PMID 21123870 JRNL DOI 10.1107/S0907444910037558 REMARK 2 REMARK 2 RESOLUTION. 2.55 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.55 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.18 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 22998 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.214 REMARK 3 R VALUE (WORKING SET) : 0.212 REMARK 3 FREE R VALUE : 0.246 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1204 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.55 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.62 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1671 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.83 REMARK 3 BIN R VALUE (WORKING SET) : 0.2770 REMARK 3 BIN FREE R VALUE SET COUNT : 93 REMARK 3 BIN FREE R VALUE : 0.3060 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3574 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 27 REMARK 3 SOLVENT ATOMS : 58 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 37.17 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.90000 REMARK 3 B22 (A**2) : -0.90000 REMARK 3 B33 (A**2) : 1.35000 REMARK 3 B12 (A**2) : -0.45000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.365 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.255 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.205 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 19.428 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.943 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.925 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3683 ; 0.007 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4977 ; 1.113 ; 1.987 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 442 ; 5.592 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 158 ;33.787 ;23.671 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 694 ;16.637 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 27 ;13.581 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 553 ; 0.080 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2714 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1741 ; 0.175 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2490 ; 0.301 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 111 ; 0.117 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 24 ; 0.110 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 7 ; 0.145 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2315 ; 0.240 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3607 ; 0.429 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1591 ; 0.459 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1370 ; 0.760 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 6 A 181 REMARK 3 ORIGIN FOR THE GROUP (A): 2.6170 89.8550 3.5380 REMARK 3 T TENSOR REMARK 3 T11: 0.4258 T22: 0.1113 REMARK 3 T33: -0.0377 T12: -0.2084 REMARK 3 T13: 0.1211 T23: -0.0977 REMARK 3 L TENSOR REMARK 3 L11: 2.7494 L22: 8.7365 REMARK 3 L33: 1.5668 L12: 2.3088 REMARK 3 L13: 0.8089 L23: 0.1746 REMARK 3 S TENSOR REMARK 3 S11: -0.4871 S12: 0.2603 S13: -0.2408 REMARK 3 S21: -1.3637 S22: 0.5453 S23: -0.3552 REMARK 3 S31: 0.0252 S32: -0.0412 S33: -0.0582 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 182 A 284 REMARK 3 ORIGIN FOR THE GROUP (A): -24.9690 74.7940 3.4890 REMARK 3 T TENSOR REMARK 3 T11: 0.1999 T22: 0.1849 REMARK 3 T33: 0.0352 T12: -0.2160 REMARK 3 T13: -0.0415 T23: -0.0684 REMARK 3 L TENSOR REMARK 3 L11: 6.3482 L22: 6.1061 REMARK 3 L33: 6.9333 L12: 2.2765 REMARK 3 L13: 0.1142 L23: 0.0105 REMARK 3 S TENSOR REMARK 3 S11: -0.0638 S12: -0.1137 S13: 0.9305 REMARK 3 S21: -0.5107 S22: -0.0187 S23: 0.7122 REMARK 3 S31: -0.3540 S32: -0.5857 S33: 0.0825 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 285 A 333 REMARK 3 ORIGIN FOR THE GROUP (A): -29.1860 80.5020 21.8870 REMARK 3 T TENSOR REMARK 3 T11: 0.5772 T22: 1.0069 REMARK 3 T33: 0.9066 T12: -0.2981 REMARK 3 T13: 0.1119 T23: -0.3309 REMARK 3 L TENSOR REMARK 3 L11: 8.2507 L22: 3.7276 REMARK 3 L33: 6.3614 L12: 2.6989 REMARK 3 L13: 0.4118 L23: 4.3818 REMARK 3 S TENSOR REMARK 3 S11: 0.9713 S12: -1.9679 S13: 0.4448 REMARK 3 S21: 0.7605 S22: -0.6795 S23: 0.3804 REMARK 3 S31: -0.7025 S32: -0.7515 S33: -0.2918 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 334 A 448 REMARK 3 ORIGIN FOR THE GROUP (A): -13.4550 67.9820 21.0350 REMARK 3 T TENSOR REMARK 3 T11: 0.3736 T22: 0.5954 REMARK 3 T33: 0.0900 T12: -0.4270 REMARK 3 T13: -0.0530 T23: 0.0776 REMARK 3 L TENSOR REMARK 3 L11: 8.7229 L22: 6.7356 REMARK 3 L33: 3.0994 L12: 3.9803 REMARK 3 L13: -1.4407 L23: -0.2583 REMARK 3 S TENSOR REMARK 3 S11: 0.9386 S12: -1.8715 S13: -0.4821 REMARK 3 S21: 0.9523 S22: -0.8487 S23: 0.1016 REMARK 3 S31: 0.1949 S32: -0.2979 S33: -0.0899 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2YXL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 11-JUL-07. REMARK 100 THE DEPOSITION ID IS D_1000027261. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-DEC-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL41XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00 REMARK 200 MONOCHROMATOR : SILICON REMARK 200 OPTICS : MONOCHROMATOR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 37661 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 10.40 REMARK 200 R MERGE (I) : 0.07100 REMARK 200 R SYM (I) : 0.07100 REMARK 200 FOR THE DATA SET : 32.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.28 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.7 REMARK 200 DATA REDUNDANCY IN SHELL : 6.40 REMARK 200 R MERGE FOR SHELL (I) : 0.80300 REMARK 200 R SYM FOR SHELL (I) : 0.80300 REMARK 200 FOR SHELL : 2.140 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 1SQF REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 65.39 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.55 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.14M NA-CITRATE, 0.08M NA-HEPES(PH REMARK 280 7.0), 8% 1.6-HEXANEDIOL, 200MM NACL, VAPOR DIFFUSION, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 62.45600 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 31.22800 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 31.22800 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 62.45600 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLU A 2 REMARK 465 ALA A 3 REMARK 465 GLU A 4 REMARK 465 LYS A 5 REMARK 465 SER A 449 REMARK 465 LYS A 450 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 6 CG CD CE NZ REMARK 470 TRP A 48 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP A 48 CZ3 CH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 7 -162.66 -113.01 REMARK 500 ASP A 101 71.19 40.08 REMARK 500 THR A 122 -97.17 -133.91 REMARK 500 HIS A 184 116.98 89.18 REMARK 500 ASP A 256 64.42 61.98 REMARK 500 ALA A 322 100.91 67.74 REMARK 500 PRO A 323 167.56 -47.81 REMARK 500 ILE A 325 -45.48 -134.46 REMARK 500 GLU A 328 -103.41 -76.68 REMARK 500 CYS A 390 46.55 -103.94 REMARK 500 ASN A 397 -94.14 -116.50 REMARK 500 PRO A 409 100.31 13.21 REMARK 500 LYS A 417 -50.49 -126.79 REMARK 500 TYR A 420 -148.76 -103.65 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 HIS A 408 PRO A 409 35.96 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SFG A 5748 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: PHO001000851.1 RELATED DB: TARGETDB DBREF 2YXL A 1 450 UNP O58581 O58581_PYRHO 1 450 SEQRES 1 A 450 MET GLU ALA GLU LYS LYS LYS LEU SER ILE PRO PRO LYS SEQRES 2 A 450 GLY ILE ARG ALA ILE ILE GLU ALA ILE ARG LEU GLY GLU SEQRES 3 A 450 ILE ILE LYS PRO SER GLN TYR ALA LYS ARG GLU ALA PHE SEQRES 4 A 450 LYS LYS HIS ASP VAL GLU GLU ALA TRP LEU ASN ARG VAL SEQRES 5 A 450 LEU THR MET ILE PHE TYR ASP ILE MET LYS LYS GLN GLY SEQRES 6 A 450 LEU ILE ASP LYS VAL ILE LYS GLU ILE VAL GLY VAL THR SEQRES 7 A 450 PRO LEU ILE LEU ASP PRO TRP LEU ARG ALA ALA LEU ARG SEQRES 8 A 450 VAL ALA VAL ASP ILE ALA LEU PHE HIS ASP PRO SER SER SEQRES 9 A 450 GLN THR ILE LYS ASN LEU ARG TRP LYS ALA SER ASP PHE SEQRES 10 A 450 ILE SER SER ARG THR HIS PRO TYR VAL GLY MET TYR PHE SEQRES 11 A 450 TRP ASP LEU LEU ASP LYS ILE PHE GLU TYR LYS PRO ASN SEQRES 12 A 450 PRO LYS ASN GLU LEU GLU GLU LEU GLU TRP LYS TYR LEU SEQRES 13 A 450 ALA PRO SER TRP LEU ILE GLU ARG VAL LYS GLY ILE LEU SEQRES 14 A 450 GLY ASP GLU THR GLU ASP PHE PHE ARG SER VAL ASN LYS SEQRES 15 A 450 ARG HIS GLU TRP ILE SER ILE ARG VAL ASN THR LEU LYS SEQRES 16 A 450 ALA ASN VAL GLU GLU VAL ILE GLY GLU LEU GLU GLU ASP SEQRES 17 A 450 GLY VAL GLU VAL VAL ARG SER GLU ARG VAL PRO THR ILE SEQRES 18 A 450 LEU LYS ILE LYS GLY PRO TYR ASN PHE ASP THR SER SER SEQRES 19 A 450 ALA PHE ASN GLU GLY LYS ILE ILE VAL GLN GLU GLU ALA SEQRES 20 A 450 SER ALA VAL ALA SER ILE VAL LEU ASP PRO LYS PRO GLY SEQRES 21 A 450 GLU THR VAL VAL ASP LEU ALA ALA ALA PRO GLY GLY LYS SEQRES 22 A 450 THR THR HIS LEU ALA GLU LEU MET LYS ASN LYS GLY LYS SEQRES 23 A 450 ILE TYR ALA PHE ASP VAL ASP LYS MET ARG MET LYS ARG SEQRES 24 A 450 LEU LYS ASP PHE VAL LYS ARG MET GLY ILE LYS ILE VAL SEQRES 25 A 450 LYS PRO LEU VAL LYS ASP ALA ARG LYS ALA PRO GLU ILE SEQRES 26 A 450 ILE GLY GLU GLU VAL ALA ASP LYS VAL LEU LEU ASP ALA SEQRES 27 A 450 PRO CYS THR SER SER GLY THR ILE GLY LYS ASN PRO GLU SEQRES 28 A 450 LEU ARG TRP ARG LEU ARG GLU ASP LYS ILE ASN GLU MET SEQRES 29 A 450 SER GLN LEU GLN ARG GLU LEU LEU GLU SER ALA ALA ARG SEQRES 30 A 450 LEU VAL LYS PRO GLY GLY ARG LEU LEU TYR THR THR CYS SEQRES 31 A 450 SER ILE PHE LYS GLU GLU ASN GLU LYS ASN ILE ARG TRP SEQRES 32 A 450 PHE LEU ASN VAL HIS PRO GLU PHE LYS LEU VAL PRO LEU SEQRES 33 A 450 LYS SER PRO TYR ASP PRO GLY PHE LEU GLU GLY THR MET SEQRES 34 A 450 ARG ALA TRP PRO HIS ARG HIS SER THR ILE GLY PHE PHE SEQRES 35 A 450 TYR ALA LEU LEU GLU LYS SER LYS HET SFG A5748 27 HETNAM SFG SINEFUNGIN HETSYN SFG ADENOSYL-ORNITHINE FORMUL 2 SFG C15 H23 N7 O5 FORMUL 3 HOH *58(H2 O) HELIX 1 1 PRO A 11 GLY A 25 1 15 HELIX 2 2 SER A 31 HIS A 42 1 12 HELIX 3 3 GLU A 46 GLY A 76 1 31 HELIX 4 4 THR A 78 LEU A 82 5 5 HELIX 5 5 ASP A 83 HIS A 100 1 18 HELIX 6 6 SER A 103 THR A 122 1 20 HELIX 7 7 HIS A 123 GLU A 139 1 17 HELIX 8 8 ASN A 146 LEU A 156 1 11 HELIX 9 9 PRO A 158 GLY A 170 1 13 HELIX 10 10 GLU A 172 LYS A 182 1 11 HELIX 11 11 ASN A 197 ASP A 208 1 12 HELIX 12 12 SER A 233 GLU A 238 1 6 HELIX 13 13 GLU A 245 ASP A 256 1 12 HELIX 14 14 GLY A 271 MET A 281 1 11 HELIX 15 15 ASP A 293 MET A 307 1 15 HELIX 16 16 SER A 342 ILE A 346 5 5 HELIX 17 17 GLU A 351 LEU A 356 1 6 HELIX 18 18 LYS A 360 ARG A 377 1 18 HELIX 19 19 PHE A 393 GLU A 396 5 4 HELIX 20 20 ASN A 397 HIS A 408 1 12 HELIX 21 21 TRP A 432 SER A 437 1 6 SHEET 1 A 4 VAL A 212 ARG A 214 0 SHEET 2 A 4 ILE A 221 LYS A 225 -1 O LYS A 223 N VAL A 213 SHEET 3 A 4 TRP A 186 VAL A 191 -1 N ILE A 187 O ILE A 224 SHEET 4 A 4 ILE A 241 VAL A 243 -1 O ILE A 242 N ARG A 190 SHEET 1 B 7 VAL A 312 LEU A 315 0 SHEET 2 B 7 LYS A 286 PHE A 290 1 N ILE A 287 O LYS A 313 SHEET 3 B 7 THR A 262 ASP A 265 1 N VAL A 263 O LYS A 286 SHEET 4 B 7 ALA A 331 ASP A 337 1 O LEU A 335 N VAL A 264 SHEET 5 B 7 VAL A 379 THR A 389 1 O LEU A 386 N LEU A 336 SHEET 6 B 7 PHE A 441 GLU A 447 -1 O LEU A 446 N LEU A 385 SHEET 7 B 7 LYS A 412 LEU A 413 -1 N LYS A 412 O GLU A 447 SHEET 1 C 8 VAL A 312 LEU A 315 0 SHEET 2 C 8 LYS A 286 PHE A 290 1 N ILE A 287 O LYS A 313 SHEET 3 C 8 THR A 262 ASP A 265 1 N VAL A 263 O LYS A 286 SHEET 4 C 8 ALA A 331 ASP A 337 1 O LEU A 335 N VAL A 264 SHEET 5 C 8 VAL A 379 THR A 389 1 O LEU A 386 N LEU A 336 SHEET 6 C 8 PHE A 441 GLU A 447 -1 O LEU A 446 N LEU A 385 SHEET 7 C 8 MET A 429 ALA A 431 -1 N MET A 429 O TYR A 443 SHEET 8 C 8 ASP A 421 PRO A 422 -1 N ASP A 421 O ARG A 430 CISPEP 1 LYS A 29 PRO A 30 0 -3.35 CISPEP 2 ARG A 183 HIS A 184 0 -3.65 CISPEP 3 GLY A 226 PRO A 227 0 -0.46 CISPEP 4 ALA A 269 PRO A 270 0 4.23 CISPEP 5 ALA A 322 PRO A 323 0 9.57 CISPEP 6 GLU A 358 ASP A 359 0 -4.52 CISPEP 7 ASP A 359 LYS A 360 0 27.27 CISPEP 8 PRO A 409 GLU A 410 0 -6.97 CISPEP 9 SER A 418 PRO A 419 0 -3.54 SITE 1 AC1 15 ALA A 267 ALA A 268 ALA A 269 PRO A 270 SITE 2 AC1 15 GLY A 271 GLY A 272 LYS A 273 ASP A 291 SITE 3 AC1 15 ARG A 296 ASP A 318 ALA A 319 ARG A 320 SITE 4 AC1 15 ASP A 337 PRO A 339 HOH A5761 CRYST1 116.621 116.621 93.684 90.00 90.00 120.00 P 32 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008575 0.004951 0.000000 0.00000 SCALE2 0.000000 0.009901 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010674 0.00000