HEADER PROTEIN TRANSPORT 27-APR-07 2YXR TITLE THE PLUG DOMAIN OF THE SECY PROTEIN STABLIZES THE CLOSED STATE OF THE TITLE 2 TRANSLOCATION CHANNEL AND MAINTAINS A MEMBRANE SEAL COMPND MOL_ID: 1; COMPND 2 MOLECULE: PREPROTEIN TRANSLOCASE SUBUNIT SECY; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PROTEIN TRANSPORT PROTEIN SEC61 SUBUNIT ALPHA HOMOLOG; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: PREPROTEIN TRANSLOCASE SUBUNIT SECE; COMPND 8 CHAIN: B; COMPND 9 SYNONYM: PROTEIN TRANSPORT PROTEIN SEC61 GAMMA SUBUNIT HOMOLOG; COMPND 10 ENGINEERED: YES; COMPND 11 MOL_ID: 3; COMPND 12 MOLECULE: PREPROTEIN TRANSLOCASE SECG SUBUNIT; COMPND 13 CHAIN: C; COMPND 14 SYNONYM: PROTEIN TRANSPORT PROTEIN SEC61 SUBUNIT BETA HOMOLOG; COMPND 15 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: METHANOCALDOCOCCUS JANNASCHII; SOURCE 3 ORGANISM_TAXID: 2190; SOURCE 4 GENE: SECY; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: C43; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PBAD; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: METHANOCALDOCOCCUS JANNASCHII; SOURCE 12 ORGANISM_TAXID: 2190; SOURCE 13 GENE: SECE; SOURCE 14 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 16 EXPRESSION_SYSTEM_STRAIN: C43; SOURCE 17 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 18 EXPRESSION_SYSTEM_PLASMID: PBAD; SOURCE 19 MOL_ID: 3; SOURCE 20 ORGANISM_SCIENTIFIC: METHANOCALDOCOCCUS JANNASCHII; SOURCE 21 ORGANISM_TAXID: 2190; SOURCE 22 GENE: SECG; SOURCE 23 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 24 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 25 EXPRESSION_SYSTEM_STRAIN: C43; SOURCE 26 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 27 EXPRESSION_SYSTEM_PLASMID: PBAD KEYWDS TRANSLOCON, PROTEIN TRANSLOCATION, SIGNAL PEPTIDE, MEMBRANE PROTEIN, KEYWDS 2 PROTEIN SECRETION, PRL MUTATION, PROTEIN TRANSPORT EXPDTA X-RAY DIFFRACTION AUTHOR W.LI,S.SCHULMAN REVDAT 4 25-OCT-23 2YXR 1 SEQADV REVDAT 3 13-JUL-11 2YXR 1 VERSN REVDAT 2 24-FEB-09 2YXR 1 VERSN REVDAT 1 14-AUG-07 2YXR 0 JRNL AUTH W.LI,S.SCHULMAN,D.BOYD,K.ERLANDSON,J.BECKWITH,T.A.RAPOPORT JRNL TITL THE PLUG DOMAIN OF THE SECY PROTEIN STABILIZES THE CLOSED JRNL TITL 2 STATE OF THE TRANSLOCATION CHANNEL AND MAINTAINS A MEMBRANE JRNL TITL 3 SEAL JRNL REF MOL.CELL V. 26 511 2007 JRNL REFN ISSN 1097-2765 JRNL PMID 17531803 JRNL DOI 10.1016/J.MOLCEL.2007.05.002 REMARK 2 REMARK 2 RESOLUTION. 3.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.3.0026 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.07 REMARK 3 DATA CUTOFF (SIGMA(F)) : 1.800 REMARK 3 COMPLETENESS FOR RANGE (%) : 65.7 REMARK 3 NUMBER OF REFLECTIONS : 8359 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.300 REMARK 3 R VALUE (WORKING SET) : 0.298 REMARK 3 FREE R VALUE : 0.335 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.300 REMARK 3 FREE R VALUE TEST SET COUNT : 465 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.69 REMARK 3 REFLECTION IN BIN (WORKING SET) : 131 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 14.66 REMARK 3 BIN R VALUE (WORKING SET) : 0.3190 REMARK 3 BIN FREE R VALUE SET COUNT : 9 REMARK 3 BIN FREE R VALUE : 0.5180 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3999 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 110.0 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 105.1 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 4.96000 REMARK 3 B22 (A**2) : -5.49000 REMARK 3 B33 (A**2) : 0.53000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.976 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.717 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 103.673 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.869 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.863 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4086 ; 0.010 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5540 ; 1.181 ; 1.989 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 515 ; 5.443 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 129 ;40.155 ;23.023 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 726 ;20.640 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 15 ;17.463 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 668 ; 0.073 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2905 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2261 ; 0.247 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2881 ; 0.319 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 151 ; 0.155 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 28 ; 0.231 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 2 ; 0.132 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2640 ; 0.512 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4162 ; 0.918 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1655 ; 0.433 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1378 ; 0.729 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 3 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2 A 433 REMARK 3 RESIDUE RANGE : B 2 B 66 REMARK 3 RESIDUE RANGE : C 21 C 52 REMARK 3 ORIGIN FOR THE GROUP (A): 19.7141 -28.5331 -18.2369 REMARK 3 T TENSOR REMARK 3 T11: -0.2704 T22: 0.1607 REMARK 3 T33: -0.3028 T12: -0.0395 REMARK 3 T13: -0.0037 T23: 0.0016 REMARK 3 L TENSOR REMARK 3 L11: 2.3500 L22: 1.9442 REMARK 3 L33: 1.7097 L12: 0.3536 REMARK 3 L13: 0.4189 L23: -0.0753 REMARK 3 S TENSOR REMARK 3 S11: 0.0681 S12: 0.2729 S13: 0.4283 REMARK 3 S21: -0.1253 S22: 0.0446 S23: 0.0137 REMARK 3 S31: -0.2427 S32: 0.1603 S33: -0.1127 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2YXR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 07-MAY-07. REMARK 100 THE DEPOSITION ID IS D_1000027267. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-DEC-06 REMARK 200 TEMPERATURE (KELVIN) : 200.0 REMARK 200 PH : 9.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97921 REMARK 200 MONOCHROMATOR : SI 111 REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 14742 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.500 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 3.300 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 8.000 REMARK 200 R MERGE (I) : 0.08700 REMARK 200 R SYM (I) : 0.08700 REMARK 200 FOR THE DATA SET : 16.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.63 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 8.00 REMARK 200 R MERGE FOR SHELL (I) : 0.73900 REMARK 200 R SYM FOR SHELL (I) : 0.73900 REMARK 200 FOR SHELL : 3.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: RESOLVE REMARK 200 STARTING MODEL: 1RHZ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 74.84 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.89 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 40-55% PEG400, 50MM GLYCINE-HCL, PH REMARK 280 9.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 46.25500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 75.18000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 46.25500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 75.18000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY IS A MONOMER IN THE ASYMMETRIC UNIT REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 6090 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 28130 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -64.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 LEU A 434 REMARK 465 ASN A 435 REMARK 465 LYS A 436 REMARK 465 MET B 0 REMARK 465 LYS B 1 REMARK 465 PRO B 67 REMARK 465 PRO B 68 REMARK 465 THR B 69 REMARK 465 THR B 70 REMARK 465 PRO B 71 REMARK 465 ARG B 72 REMARK 465 VAL B 73 REMARK 465 MET C 1 REMARK 465 SER C 2 REMARK 465 LYS C 3 REMARK 465 ARG C 4 REMARK 465 GLU C 5 REMARK 465 GLU C 6 REMARK 465 THR C 7 REMARK 465 GLY C 8 REMARK 465 LEU C 9 REMARK 465 ALA C 10 REMARK 465 THR C 11 REMARK 465 SER C 12 REMARK 465 ALA C 13 REMARK 465 GLY C 14 REMARK 465 LEU C 15 REMARK 465 ILE C 16 REMARK 465 ARG C 17 REMARK 465 TYR C 18 REMARK 465 MET C 19 REMARK 465 ASP C 20 REMARK 465 LEU C 53 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 4 37.54 -68.54 REMARK 500 LYS A 19 -169.19 -64.16 REMARK 500 ALA A 48 79.97 -67.53 REMARK 500 ALA A 50 56.32 -91.72 REMARK 500 GLN A 51 -78.37 -69.61 REMARK 500 ALA A 54 39.99 -81.98 REMARK 500 PHE A 56 -70.37 -39.73 REMARK 500 LEU A 70 19.88 -172.59 REMARK 500 ILE A 71 -13.98 108.37 REMARK 500 THR A 72 -98.81 -60.82 REMARK 500 ILE A 75 -32.87 -22.99 REMARK 500 PRO A 77 -18.92 -36.63 REMARK 500 LEU A 88 -71.07 -68.99 REMARK 500 VAL A 89 -1.95 -54.82 REMARK 500 SER A 91 26.39 -75.92 REMARK 500 ILE A 94 50.69 -143.58 REMARK 500 GLN A 95 131.80 -29.35 REMARK 500 SER A 99 -66.42 -6.29 REMARK 500 GLU A 102 -80.74 -61.79 REMARK 500 GLN A 108 -73.47 -66.66 REMARK 500 LEU A 135 30.90 -80.03 REMARK 500 THR A 136 99.68 -50.73 REMARK 500 PRO A 137 -36.95 -32.85 REMARK 500 ILE A 145 -81.18 -52.36 REMARK 500 ILE A 147 -77.70 -50.04 REMARK 500 TYR A 164 -8.73 -141.08 REMARK 500 LEU A 172 -73.48 -51.70 REMARK 500 PRO A 189 -86.00 -58.48 REMARK 500 GLU A 190 39.58 -74.57 REMARK 500 PRO A 205 111.04 -31.04 REMARK 500 ALA A 211 -74.28 -41.64 REMARK 500 HIS A 237 148.54 -32.94 REMARK 500 ARG A 239 -15.99 74.86 REMARK 500 ILE A 240 -151.80 -83.90 REMARK 500 VAL A 244 -95.42 -136.71 REMARK 500 LYS A 246 44.49 173.60 REMARK 500 ASN A 256 -73.75 -65.34 REMARK 500 LEU A 276 48.13 -76.14 REMARK 500 TYR A 277 -57.95 -135.99 REMARK 500 MET A 279 26.26 -150.42 REMARK 500 PRO A 282 59.79 -68.82 REMARK 500 TYR A 287 -89.29 -88.69 REMARK 500 GLU A 288 108.19 67.08 REMARK 500 ASP A 294 145.72 177.88 REMARK 500 TYR A 299 -1.32 -59.26 REMARK 500 TYR A 304 -168.46 -74.24 REMARK 500 LEU A 306 -68.80 -127.09 REMARK 500 SER A 311 35.29 -58.82 REMARK 500 ASP A 312 54.02 -175.62 REMARK 500 THR A 338 -103.97 3.07 REMARK 500 REMARK 500 THIS ENTRY HAS 76 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1RHZ RELATED DB: PDB REMARK 900 PROTEIN TRANSLOCATION CHANNEL REMARK 900 RELATED ID: 1RH5 RELATED DB: PDB REMARK 900 PROTEIN TRANSLOCATION CHANNEL REMARK 900 RELATED ID: 2YXQ RELATED DB: PDB REMARK 900 PROTEIN TRANSLOCATION CHANNEL REMARK 999 REMARK 999 SEQUENCE REMARK 999 DELETION OF 57-67 AND SUBSTITUTION WITH ONE GLY DBREF 2YXR A 1 436 UNP Q60175 SECY_METJA 1 436 DBREF 2YXR B 0 73 UNP Q57817 SECE_METJA 1 74 DBREF 2YXR C 1 53 UNP P60460 SECG_METJA 1 53 SEQADV 2YXR A UNP Q60175 GLU 57 DELETION SEQADV 2YXR A UNP Q60175 PHE 58 DELETION SEQADV 2YXR A UNP Q60175 TRP 59 DELETION SEQADV 2YXR A UNP Q60175 GLN 60 DELETION SEQADV 2YXR A UNP Q60175 THR 61 DELETION SEQADV 2YXR A UNP Q60175 ILE 62 DELETION SEQADV 2YXR A UNP Q60175 THR 63 DELETION SEQADV 2YXR A UNP Q60175 ALA 64 DELETION SEQADV 2YXR A UNP Q60175 SER 65 DELETION SEQADV 2YXR A UNP Q60175 ARG 66 DELETION SEQADV 2YXR GLY A 67 UNP Q60175 ILE 67 SEE REMARK 999 SEQRES 1 A 426 MET LYS LYS LEU ILE PRO ILE LEU GLU LYS ILE PRO GLU SEQRES 2 A 426 VAL GLU LEU PRO VAL LYS GLU ILE THR PHE LYS GLU LYS SEQRES 3 A 426 LEU LYS TRP THR GLY ILE VAL LEU VAL LEU TYR PHE ILE SEQRES 4 A 426 MET GLY CYS ILE ASP VAL TYR THR ALA GLY ALA GLN ILE SEQRES 5 A 426 PRO ALA ILE PHE GLY GLY THR LEU ILE THR LEU GLY ILE SEQRES 6 A 426 GLY PRO ILE VAL THR ALA GLY ILE ILE MET GLN LEU LEU SEQRES 7 A 426 VAL GLY SER GLY ILE ILE GLN MET ASP LEU SER ILE PRO SEQRES 8 A 426 GLU ASN ARG ALA LEU PHE GLN GLY CYS GLN LYS LEU LEU SEQRES 9 A 426 SER ILE ILE MET CYS PHE VAL GLU ALA VAL LEU PHE VAL SEQRES 10 A 426 GLY ALA GLY ALA PHE GLY ILE LEU THR PRO LEU LEU ALA SEQRES 11 A 426 PHE LEU VAL ILE ILE GLN ILE ALA PHE GLY SER ILE ILE SEQRES 12 A 426 LEU ILE TYR LEU ASP GLU ILE VAL SER LYS TYR GLY ILE SEQRES 13 A 426 GLY SER GLY ILE GLY LEU PHE ILE ALA ALA GLY VAL SER SEQRES 14 A 426 GLN THR ILE PHE VAL GLY ALA LEU GLY PRO GLU GLY TYR SEQRES 15 A 426 LEU TRP LYS PHE LEU ASN SER LEU ILE GLN GLY VAL PRO SEQRES 16 A 426 ASN ILE GLU TYR ILE ALA PRO ILE ILE GLY THR ILE ILE SEQRES 17 A 426 VAL PHE LEU MET VAL VAL TYR ALA GLU CYS MET ARG VAL SEQRES 18 A 426 GLU ILE PRO LEU ALA HIS GLY ARG ILE LYS GLY ALA VAL SEQRES 19 A 426 GLY LYS TYR PRO ILE LYS PHE VAL TYR VAL SER ASN ILE SEQRES 20 A 426 PRO VAL ILE LEU ALA ALA ALA LEU PHE ALA ASN ILE GLN SEQRES 21 A 426 LEU TRP GLY LEU ALA LEU TYR ARG MET GLY ILE PRO ILE SEQRES 22 A 426 LEU GLY HIS TYR GLU GLY GLY ARG ALA VAL ASP GLY ILE SEQRES 23 A 426 ALA TYR TYR LEU SER THR PRO TYR GLY LEU SER SER VAL SEQRES 24 A 426 ILE SER ASP PRO ILE HIS ALA ILE VAL TYR MET ILE ALA SEQRES 25 A 426 MET ILE ILE THR CYS VAL MET PHE GLY ILE PHE TRP VAL SEQRES 26 A 426 GLU THR THR GLY LEU ASP PRO LYS SER MET ALA LYS ARG SEQRES 27 A 426 ILE GLY SER LEU GLY MET ALA ILE LYS GLY PHE ARG LYS SEQRES 28 A 426 SER GLU LYS ALA ILE GLU HIS ARG LEU LYS ARG TYR ILE SEQRES 29 A 426 PRO PRO LEU THR VAL MET SER SER ALA PHE VAL GLY PHE SEQRES 30 A 426 LEU ALA THR ILE ALA ASN PHE ILE GLY ALA LEU GLY GLY SEQRES 31 A 426 GLY THR GLY VAL LEU LEU THR VAL SER ILE VAL TYR ARG SEQRES 32 A 426 MET TYR GLU GLN LEU LEU ARG GLU LYS VAL SER GLU LEU SEQRES 33 A 426 HIS PRO ALA ILE ALA LYS LEU LEU ASN LYS SEQRES 1 B 74 MET LYS THR ASP PHE ASN GLN LYS ILE GLU GLN LEU LYS SEQRES 2 B 74 GLU PHE ILE GLU GLU CYS ARG ARG VAL TRP LEU VAL LEU SEQRES 3 B 74 LYS LYS PRO THR LYS ASP GLU TYR LEU ALA VAL ALA LYS SEQRES 4 B 74 VAL THR ALA LEU GLY ILE SER LEU LEU GLY ILE ILE GLY SEQRES 5 B 74 TYR ILE ILE HIS VAL PRO ALA THR TYR ILE LYS GLY ILE SEQRES 6 B 74 LEU LYS PRO PRO THR THR PRO ARG VAL SEQRES 1 C 53 MET SER LYS ARG GLU GLU THR GLY LEU ALA THR SER ALA SEQRES 2 C 53 GLY LEU ILE ARG TYR MET ASP GLU THR PHE SER LYS ILE SEQRES 3 C 53 ARG VAL LYS PRO GLU HIS VAL ILE GLY VAL THR VAL ALA SEQRES 4 C 53 PHE VAL ILE ILE GLU ALA ILE LEU THR TYR GLY ARG PHE SEQRES 5 C 53 LEU HELIX 1 1 LEU A 4 ILE A 11 1 8 HELIX 2 2 THR A 22 ILE A 43 1 22 HELIX 3 3 ALA A 54 THR A 69 1 6 HELIX 4 4 THR A 72 ILE A 75 5 4 HELIX 5 5 GLY A 76 VAL A 89 1 14 HELIX 6 6 ILE A 100 GLY A 128 1 29 HELIX 7 7 THR A 136 GLY A 165 1 30 HELIX 8 8 SER A 168 GLY A 188 1 21 HELIX 9 9 GLY A 191 GLY A 203 1 13 HELIX 10 10 ASN A 206 MET A 229 1 24 HELIX 11 11 VAL A 252 VAL A 254 5 3 HELIX 12 12 SER A 255 LEU A 276 1 22 HELIX 13 13 GLY A 295 LEU A 300 1 6 HELIX 14 14 ASP A 312 THR A 337 1 26 HELIX 15 15 ASP A 341 SER A 351 1 11 HELIX 16 16 SER A 362 GLY A 396 1 35 HELIX 17 17 GLY A 400 GLU A 425 1 26 HELIX 18 18 THR B 2 TRP B 22 1 21 HELIX 19 19 THR B 29 LEU B 65 1 37 HELIX 20 20 LYS C 29 THR C 48 1 20 SHEET 1 A 2 VAL A 231 ILE A 233 0 SHEET 2 A 2 TYR A 247 ILE A 249 -1 O TYR A 247 N ILE A 233 CRYST1 92.510 150.360 79.850 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010810 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006651 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012523 0.00000