data_2YY8 # _entry.id 2YY8 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.388 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2YY8 pdb_00002yy8 10.2210/pdb2yy8/pdb RCSB RCSB027284 ? ? WWPDB D_1000027284 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2008-03-18 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2024-03-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' chem_comp_atom 2 3 'Structure model' chem_comp_bond 3 3 'Structure model' database_2 4 3 'Structure model' struct_ref_seq_dif 5 3 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_struct_ref_seq_dif.details' 4 3 'Structure model' '_struct_site.pdbx_auth_asym_id' 5 3 'Structure model' '_struct_site.pdbx_auth_comp_id' 6 3 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2YY8 _pdbx_database_status.recvd_initial_deposition_date 2007-04-27 _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id pho001000461.1 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Kuratani, M.' 1 'Yokoyama, S.' 2 'RIKEN Structural Genomics/Proteomics Initiative (RSGI)' 3 # _citation.id primary _citation.title ;Crystal structure and mutational study of a unique SpoU family archaeal methylase that forms 2'-O-methylcytidine at position 56 of tRNA ; _citation.journal_abbrev J.Mol.Biol. _citation.journal_volume 375 _citation.page_first 1064 _citation.page_last 1075 _citation.year 2008 _citation.journal_id_ASTM JMOBAK _citation.country UK _citation.journal_id_ISSN 0022-2836 _citation.journal_id_CSD 0070 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 18068186 _citation.pdbx_database_id_DOI 10.1016/j.jmb.2007.11.023 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Kuratani, M.' 1 ? primary 'Bessho, Y.' 2 ? primary 'Nishimoto, M.' 3 ? primary 'Grosjean, H.' 4 ? primary 'Yokoyama, S.' 5 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'UPF0106 protein PH0461' 22859.383 2 ? ? 'UNP residues 1-195' ? 2 non-polymer syn "5'-DEOXY-5'-METHYLTHIOADENOSINE" 297.334 1 ? ? ? ? 3 non-polymer syn S-ADENOSYLMETHIONINE 398.437 1 ? ? ? ? 4 water nat water 18.015 101 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name aTrm56 # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MIVVLRLGHRPERDKRVTTHVALTARAFGADGIIIASEEDEKVKESVEDVVKRWGGPFFIEFNRNWRKVMKEFTGVKVHL TMYGLHVDDVIEELKEKLKKGEDFMIIVGAEKVPREVYELADYNVAIGNQPHSEVAALAVLLDRLLEGKGLKKEFKGAKI KIVPQARGKKVVEVQGYAEQDKAEGKATPGKNWENHHHHHH ; _entity_poly.pdbx_seq_one_letter_code_can ;MIVVLRLGHRPERDKRVTTHVALTARAFGADGIIIASEEDEKVKESVEDVVKRWGGPFFIEFNRNWRKVMKEFTGVKVHL TMYGLHVDDVIEELKEKLKKGEDFMIIVGAEKVPREVYELADYNVAIGNQPHSEVAALAVLLDRLLEGKGLKKEFKGAKI KIVPQARGKKVVEVQGYAEQDKAEGKATPGKNWENHHHHHH ; _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier pho001000461.1 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 "5'-DEOXY-5'-METHYLTHIOADENOSINE" MTA 3 S-ADENOSYLMETHIONINE SAM 4 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 ILE n 1 3 VAL n 1 4 VAL n 1 5 LEU n 1 6 ARG n 1 7 LEU n 1 8 GLY n 1 9 HIS n 1 10 ARG n 1 11 PRO n 1 12 GLU n 1 13 ARG n 1 14 ASP n 1 15 LYS n 1 16 ARG n 1 17 VAL n 1 18 THR n 1 19 THR n 1 20 HIS n 1 21 VAL n 1 22 ALA n 1 23 LEU n 1 24 THR n 1 25 ALA n 1 26 ARG n 1 27 ALA n 1 28 PHE n 1 29 GLY n 1 30 ALA n 1 31 ASP n 1 32 GLY n 1 33 ILE n 1 34 ILE n 1 35 ILE n 1 36 ALA n 1 37 SER n 1 38 GLU n 1 39 GLU n 1 40 ASP n 1 41 GLU n 1 42 LYS n 1 43 VAL n 1 44 LYS n 1 45 GLU n 1 46 SER n 1 47 VAL n 1 48 GLU n 1 49 ASP n 1 50 VAL n 1 51 VAL n 1 52 LYS n 1 53 ARG n 1 54 TRP n 1 55 GLY n 1 56 GLY n 1 57 PRO n 1 58 PHE n 1 59 PHE n 1 60 ILE n 1 61 GLU n 1 62 PHE n 1 63 ASN n 1 64 ARG n 1 65 ASN n 1 66 TRP n 1 67 ARG n 1 68 LYS n 1 69 VAL n 1 70 MET n 1 71 LYS n 1 72 GLU n 1 73 PHE n 1 74 THR n 1 75 GLY n 1 76 VAL n 1 77 LYS n 1 78 VAL n 1 79 HIS n 1 80 LEU n 1 81 THR n 1 82 MET n 1 83 TYR n 1 84 GLY n 1 85 LEU n 1 86 HIS n 1 87 VAL n 1 88 ASP n 1 89 ASP n 1 90 VAL n 1 91 ILE n 1 92 GLU n 1 93 GLU n 1 94 LEU n 1 95 LYS n 1 96 GLU n 1 97 LYS n 1 98 LEU n 1 99 LYS n 1 100 LYS n 1 101 GLY n 1 102 GLU n 1 103 ASP n 1 104 PHE n 1 105 MET n 1 106 ILE n 1 107 ILE n 1 108 VAL n 1 109 GLY n 1 110 ALA n 1 111 GLU n 1 112 LYS n 1 113 VAL n 1 114 PRO n 1 115 ARG n 1 116 GLU n 1 117 VAL n 1 118 TYR n 1 119 GLU n 1 120 LEU n 1 121 ALA n 1 122 ASP n 1 123 TYR n 1 124 ASN n 1 125 VAL n 1 126 ALA n 1 127 ILE n 1 128 GLY n 1 129 ASN n 1 130 GLN n 1 131 PRO n 1 132 HIS n 1 133 SER n 1 134 GLU n 1 135 VAL n 1 136 ALA n 1 137 ALA n 1 138 LEU n 1 139 ALA n 1 140 VAL n 1 141 LEU n 1 142 LEU n 1 143 ASP n 1 144 ARG n 1 145 LEU n 1 146 LEU n 1 147 GLU n 1 148 GLY n 1 149 LYS n 1 150 GLY n 1 151 LEU n 1 152 LYS n 1 153 LYS n 1 154 GLU n 1 155 PHE n 1 156 LYS n 1 157 GLY n 1 158 ALA n 1 159 LYS n 1 160 ILE n 1 161 LYS n 1 162 ILE n 1 163 VAL n 1 164 PRO n 1 165 GLN n 1 166 ALA n 1 167 ARG n 1 168 GLY n 1 169 LYS n 1 170 LYS n 1 171 VAL n 1 172 VAL n 1 173 GLU n 1 174 VAL n 1 175 GLN n 1 176 GLY n 1 177 TYR n 1 178 ALA n 1 179 GLU n 1 180 GLN n 1 181 ASP n 1 182 LYS n 1 183 ALA n 1 184 GLU n 1 185 GLY n 1 186 LYS n 1 187 ALA n 1 188 THR n 1 189 PRO n 1 190 GLY n 1 191 LYS n 1 192 ASN n 1 193 TRP n 1 194 GLU n 1 195 ASN n 1 196 HIS n 1 197 HIS n 1 198 HIS n 1 199 HIS n 1 200 HIS n 1 201 HIS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Pyrococcus _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Pyrococcus horikoshii' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 53953 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET26b _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MTA non-polymer . "5'-DEOXY-5'-METHYLTHIOADENOSINE" ? 'C11 H15 N5 O3 S' 297.334 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SAM non-polymer . S-ADENOSYLMETHIONINE ? 'C15 H22 N6 O5 S' 398.437 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 1 1 MET MET A . n A 1 2 ILE 2 2 2 ILE ILE A . n A 1 3 VAL 3 3 3 VAL VAL A . n A 1 4 VAL 4 4 4 VAL VAL A . n A 1 5 LEU 5 5 5 LEU LEU A . n A 1 6 ARG 6 6 6 ARG ARG A . n A 1 7 LEU 7 7 7 LEU LEU A . n A 1 8 GLY 8 8 8 GLY GLY A . n A 1 9 HIS 9 9 9 HIS HIS A . n A 1 10 ARG 10 10 10 ARG ARG A . n A 1 11 PRO 11 11 11 PRO PRO A . n A 1 12 GLU 12 12 12 GLU GLU A . n A 1 13 ARG 13 13 ? ? ? A . n A 1 14 ASP 14 14 14 ASP ASP A . n A 1 15 LYS 15 15 15 LYS LYS A . n A 1 16 ARG 16 16 16 ARG ARG A . n A 1 17 VAL 17 17 17 VAL VAL A . n A 1 18 THR 18 18 18 THR THR A . n A 1 19 THR 19 19 19 THR THR A . n A 1 20 HIS 20 20 20 HIS HIS A . n A 1 21 VAL 21 21 21 VAL VAL A . n A 1 22 ALA 22 22 22 ALA ALA A . n A 1 23 LEU 23 23 23 LEU LEU A . n A 1 24 THR 24 24 24 THR THR A . n A 1 25 ALA 25 25 25 ALA ALA A . n A 1 26 ARG 26 26 26 ARG ARG A . n A 1 27 ALA 27 27 27 ALA ALA A . n A 1 28 PHE 28 28 28 PHE PHE A . n A 1 29 GLY 29 29 29 GLY GLY A . n A 1 30 ALA 30 30 30 ALA ALA A . n A 1 31 ASP 31 31 31 ASP ASP A . n A 1 32 GLY 32 32 32 GLY GLY A . n A 1 33 ILE 33 33 33 ILE ILE A . n A 1 34 ILE 34 34 34 ILE ILE A . n A 1 35 ILE 35 35 35 ILE ILE A . n A 1 36 ALA 36 36 36 ALA ALA A . n A 1 37 SER 37 37 37 SER SER A . n A 1 38 GLU 38 38 38 GLU GLU A . n A 1 39 GLU 39 39 39 GLU GLU A . n A 1 40 ASP 40 40 40 ASP ASP A . n A 1 41 GLU 41 41 41 GLU GLU A . n A 1 42 LYS 42 42 42 LYS LYS A . n A 1 43 VAL 43 43 43 VAL VAL A . n A 1 44 LYS 44 44 44 LYS LYS A . n A 1 45 GLU 45 45 45 GLU GLU A . n A 1 46 SER 46 46 46 SER SER A . n A 1 47 VAL 47 47 47 VAL VAL A . n A 1 48 GLU 48 48 48 GLU GLU A . n A 1 49 ASP 49 49 49 ASP ASP A . n A 1 50 VAL 50 50 50 VAL VAL A . n A 1 51 VAL 51 51 51 VAL VAL A . n A 1 52 LYS 52 52 52 LYS LYS A . n A 1 53 ARG 53 53 53 ARG ARG A . n A 1 54 TRP 54 54 54 TRP TRP A . n A 1 55 GLY 55 55 55 GLY GLY A . n A 1 56 GLY 56 56 56 GLY GLY A . n A 1 57 PRO 57 57 57 PRO PRO A . n A 1 58 PHE 58 58 58 PHE PHE A . n A 1 59 PHE 59 59 59 PHE PHE A . n A 1 60 ILE 60 60 60 ILE ILE A . n A 1 61 GLU 61 61 61 GLU GLU A . n A 1 62 PHE 62 62 62 PHE PHE A . n A 1 63 ASN 63 63 63 ASN ASN A . n A 1 64 ARG 64 64 64 ARG ARG A . n A 1 65 ASN 65 65 65 ASN ASN A . n A 1 66 TRP 66 66 66 TRP TRP A . n A 1 67 ARG 67 67 67 ARG ARG A . n A 1 68 LYS 68 68 68 LYS LYS A . n A 1 69 VAL 69 69 69 VAL VAL A . n A 1 70 MET 70 70 70 MET MET A . n A 1 71 LYS 71 71 71 LYS LYS A . n A 1 72 GLU 72 72 72 GLU GLU A . n A 1 73 PHE 73 73 73 PHE PHE A . n A 1 74 THR 74 74 74 THR THR A . n A 1 75 GLY 75 75 75 GLY GLY A . n A 1 76 VAL 76 76 76 VAL VAL A . n A 1 77 LYS 77 77 77 LYS LYS A . n A 1 78 VAL 78 78 78 VAL VAL A . n A 1 79 HIS 79 79 79 HIS HIS A . n A 1 80 LEU 80 80 80 LEU LEU A . n A 1 81 THR 81 81 81 THR THR A . n A 1 82 MET 82 82 82 MET MET A . n A 1 83 TYR 83 83 83 TYR TYR A . n A 1 84 GLY 84 84 84 GLY GLY A . n A 1 85 LEU 85 85 85 LEU LEU A . n A 1 86 HIS 86 86 86 HIS HIS A . n A 1 87 VAL 87 87 87 VAL VAL A . n A 1 88 ASP 88 88 88 ASP ASP A . n A 1 89 ASP 89 89 89 ASP ASP A . n A 1 90 VAL 90 90 90 VAL VAL A . n A 1 91 ILE 91 91 91 ILE ILE A . n A 1 92 GLU 92 92 92 GLU GLU A . n A 1 93 GLU 93 93 93 GLU GLU A . n A 1 94 LEU 94 94 94 LEU LEU A . n A 1 95 LYS 95 95 95 LYS LYS A . n A 1 96 GLU 96 96 96 GLU GLU A . n A 1 97 LYS 97 97 97 LYS LYS A . n A 1 98 LEU 98 98 98 LEU LEU A . n A 1 99 LYS 99 99 99 LYS LYS A . n A 1 100 LYS 100 100 100 LYS LYS A . n A 1 101 GLY 101 101 101 GLY GLY A . n A 1 102 GLU 102 102 102 GLU GLU A . n A 1 103 ASP 103 103 103 ASP ASP A . n A 1 104 PHE 104 104 104 PHE PHE A . n A 1 105 MET 105 105 105 MET MET A . n A 1 106 ILE 106 106 106 ILE ILE A . n A 1 107 ILE 107 107 107 ILE ILE A . n A 1 108 VAL 108 108 108 VAL VAL A . n A 1 109 GLY 109 109 109 GLY GLY A . n A 1 110 ALA 110 110 110 ALA ALA A . n A 1 111 GLU 111 111 111 GLU GLU A . n A 1 112 LYS 112 112 112 LYS LYS A . n A 1 113 VAL 113 113 113 VAL VAL A . n A 1 114 PRO 114 114 114 PRO PRO A . n A 1 115 ARG 115 115 115 ARG ARG A . n A 1 116 GLU 116 116 116 GLU GLU A . n A 1 117 VAL 117 117 117 VAL VAL A . n A 1 118 TYR 118 118 118 TYR TYR A . n A 1 119 GLU 119 119 119 GLU GLU A . n A 1 120 LEU 120 120 120 LEU LEU A . n A 1 121 ALA 121 121 121 ALA ALA A . n A 1 122 ASP 122 122 122 ASP ASP A . n A 1 123 TYR 123 123 123 TYR TYR A . n A 1 124 ASN 124 124 124 ASN ASN A . n A 1 125 VAL 125 125 125 VAL VAL A . n A 1 126 ALA 126 126 126 ALA ALA A . n A 1 127 ILE 127 127 127 ILE ILE A . n A 1 128 GLY 128 128 128 GLY GLY A . n A 1 129 ASN 129 129 129 ASN ASN A . n A 1 130 GLN 130 130 130 GLN GLN A . n A 1 131 PRO 131 131 131 PRO PRO A . n A 1 132 HIS 132 132 132 HIS HIS A . n A 1 133 SER 133 133 133 SER SER A . n A 1 134 GLU 134 134 134 GLU GLU A . n A 1 135 VAL 135 135 135 VAL VAL A . n A 1 136 ALA 136 136 136 ALA ALA A . n A 1 137 ALA 137 137 137 ALA ALA A . n A 1 138 LEU 138 138 138 LEU LEU A . n A 1 139 ALA 139 139 139 ALA ALA A . n A 1 140 VAL 140 140 140 VAL VAL A . n A 1 141 LEU 141 141 141 LEU LEU A . n A 1 142 LEU 142 142 142 LEU LEU A . n A 1 143 ASP 143 143 143 ASP ASP A . n A 1 144 ARG 144 144 144 ARG ARG A . n A 1 145 LEU 145 145 145 LEU LEU A . n A 1 146 LEU 146 146 146 LEU LEU A . n A 1 147 GLU 147 147 147 GLU GLU A . n A 1 148 GLY 148 148 148 GLY GLY A . n A 1 149 LYS 149 149 149 LYS LYS A . n A 1 150 GLY 150 150 150 GLY GLY A . n A 1 151 LEU 151 151 151 LEU LEU A . n A 1 152 LYS 152 152 152 LYS LYS A . n A 1 153 LYS 153 153 153 LYS LYS A . n A 1 154 GLU 154 154 154 GLU GLU A . n A 1 155 PHE 155 155 155 PHE PHE A . n A 1 156 LYS 156 156 156 LYS LYS A . n A 1 157 GLY 157 157 157 GLY GLY A . n A 1 158 ALA 158 158 158 ALA ALA A . n A 1 159 LYS 159 159 159 LYS LYS A . n A 1 160 ILE 160 160 160 ILE ILE A . n A 1 161 LYS 161 161 161 LYS LYS A . n A 1 162 ILE 162 162 162 ILE ILE A . n A 1 163 VAL 163 163 163 VAL VAL A . n A 1 164 PRO 164 164 164 PRO PRO A . n A 1 165 GLN 165 165 165 GLN GLN A . n A 1 166 ALA 166 166 166 ALA ALA A . n A 1 167 ARG 167 167 167 ARG ARG A . n A 1 168 GLY 168 168 168 GLY GLY A . n A 1 169 LYS 169 169 169 LYS LYS A . n A 1 170 LYS 170 170 170 LYS LYS A . n A 1 171 VAL 171 171 171 VAL VAL A . n A 1 172 VAL 172 172 172 VAL VAL A . n A 1 173 GLU 173 173 173 GLU GLU A . n A 1 174 VAL 174 174 174 VAL VAL A . n A 1 175 GLN 175 175 175 GLN GLN A . n A 1 176 GLY 176 176 ? ? ? A . n A 1 177 TYR 177 177 ? ? ? A . n A 1 178 ALA 178 178 ? ? ? A . n A 1 179 GLU 179 179 ? ? ? A . n A 1 180 GLN 180 180 ? ? ? A . n A 1 181 ASP 181 181 ? ? ? A . n A 1 182 LYS 182 182 ? ? ? A . n A 1 183 ALA 183 183 ? ? ? A . n A 1 184 GLU 184 184 ? ? ? A . n A 1 185 GLY 185 185 ? ? ? A . n A 1 186 LYS 186 186 ? ? ? A . n A 1 187 ALA 187 187 ? ? ? A . n A 1 188 THR 188 188 ? ? ? A . n A 1 189 PRO 189 189 ? ? ? A . n A 1 190 GLY 190 190 ? ? ? A . n A 1 191 LYS 191 191 ? ? ? A . n A 1 192 ASN 192 192 ? ? ? A . n A 1 193 TRP 193 193 ? ? ? A . n A 1 194 GLU 194 194 ? ? ? A . n A 1 195 ASN 195 195 ? ? ? A . n A 1 196 HIS 196 196 ? ? ? A . n A 1 197 HIS 197 197 ? ? ? A . n A 1 198 HIS 198 198 ? ? ? A . n A 1 199 HIS 199 199 ? ? ? A . n A 1 200 HIS 200 200 ? ? ? A . n A 1 201 HIS 201 201 ? ? ? A . n B 1 1 MET 1 1 1 MET MET B . n B 1 2 ILE 2 2 2 ILE ILE B . n B 1 3 VAL 3 3 3 VAL VAL B . n B 1 4 VAL 4 4 4 VAL VAL B . n B 1 5 LEU 5 5 5 LEU LEU B . n B 1 6 ARG 6 6 6 ARG ARG B . n B 1 7 LEU 7 7 7 LEU LEU B . n B 1 8 GLY 8 8 8 GLY GLY B . n B 1 9 HIS 9 9 9 HIS HIS B . n B 1 10 ARG 10 10 10 ARG ARG B . n B 1 11 PRO 11 11 11 PRO PRO B . n B 1 12 GLU 12 12 12 GLU GLU B . n B 1 13 ARG 13 13 13 ARG ARG B . n B 1 14 ASP 14 14 14 ASP ASP B . n B 1 15 LYS 15 15 15 LYS LYS B . n B 1 16 ARG 16 16 16 ARG ARG B . n B 1 17 VAL 17 17 17 VAL VAL B . n B 1 18 THR 18 18 18 THR THR B . n B 1 19 THR 19 19 19 THR THR B . n B 1 20 HIS 20 20 20 HIS HIS B . n B 1 21 VAL 21 21 21 VAL VAL B . n B 1 22 ALA 22 22 22 ALA ALA B . n B 1 23 LEU 23 23 23 LEU LEU B . n B 1 24 THR 24 24 24 THR THR B . n B 1 25 ALA 25 25 25 ALA ALA B . n B 1 26 ARG 26 26 26 ARG ARG B . n B 1 27 ALA 27 27 27 ALA ALA B . n B 1 28 PHE 28 28 28 PHE PHE B . n B 1 29 GLY 29 29 29 GLY GLY B . n B 1 30 ALA 30 30 30 ALA ALA B . n B 1 31 ASP 31 31 31 ASP ASP B . n B 1 32 GLY 32 32 32 GLY GLY B . n B 1 33 ILE 33 33 33 ILE ILE B . n B 1 34 ILE 34 34 34 ILE ILE B . n B 1 35 ILE 35 35 35 ILE ILE B . n B 1 36 ALA 36 36 36 ALA ALA B . n B 1 37 SER 37 37 37 SER SER B . n B 1 38 GLU 38 38 38 GLU GLU B . n B 1 39 GLU 39 39 39 GLU GLU B . n B 1 40 ASP 40 40 40 ASP ASP B . n B 1 41 GLU 41 41 41 GLU GLU B . n B 1 42 LYS 42 42 42 LYS LYS B . n B 1 43 VAL 43 43 43 VAL VAL B . n B 1 44 LYS 44 44 44 LYS LYS B . n B 1 45 GLU 45 45 45 GLU GLU B . n B 1 46 SER 46 46 46 SER SER B . n B 1 47 VAL 47 47 47 VAL VAL B . n B 1 48 GLU 48 48 48 GLU GLU B . n B 1 49 ASP 49 49 49 ASP ASP B . n B 1 50 VAL 50 50 50 VAL VAL B . n B 1 51 VAL 51 51 51 VAL VAL B . n B 1 52 LYS 52 52 52 LYS LYS B . n B 1 53 ARG 53 53 53 ARG ARG B . n B 1 54 TRP 54 54 54 TRP TRP B . n B 1 55 GLY 55 55 55 GLY GLY B . n B 1 56 GLY 56 56 56 GLY GLY B . n B 1 57 PRO 57 57 57 PRO PRO B . n B 1 58 PHE 58 58 58 PHE PHE B . n B 1 59 PHE 59 59 59 PHE PHE B . n B 1 60 ILE 60 60 60 ILE ILE B . n B 1 61 GLU 61 61 61 GLU GLU B . n B 1 62 PHE 62 62 62 PHE PHE B . n B 1 63 ASN 63 63 63 ASN ASN B . n B 1 64 ARG 64 64 64 ARG ARG B . n B 1 65 ASN 65 65 65 ASN ASN B . n B 1 66 TRP 66 66 66 TRP TRP B . n B 1 67 ARG 67 67 67 ARG ARG B . n B 1 68 LYS 68 68 68 LYS LYS B . n B 1 69 VAL 69 69 69 VAL VAL B . n B 1 70 MET 70 70 70 MET MET B . n B 1 71 LYS 71 71 71 LYS LYS B . n B 1 72 GLU 72 72 72 GLU GLU B . n B 1 73 PHE 73 73 73 PHE PHE B . n B 1 74 THR 74 74 74 THR THR B . n B 1 75 GLY 75 75 75 GLY GLY B . n B 1 76 VAL 76 76 76 VAL VAL B . n B 1 77 LYS 77 77 77 LYS LYS B . n B 1 78 VAL 78 78 78 VAL VAL B . n B 1 79 HIS 79 79 79 HIS HIS B . n B 1 80 LEU 80 80 80 LEU LEU B . n B 1 81 THR 81 81 81 THR THR B . n B 1 82 MET 82 82 82 MET MET B . n B 1 83 TYR 83 83 83 TYR TYR B . n B 1 84 GLY 84 84 84 GLY GLY B . n B 1 85 LEU 85 85 85 LEU LEU B . n B 1 86 HIS 86 86 86 HIS HIS B . n B 1 87 VAL 87 87 87 VAL VAL B . n B 1 88 ASP 88 88 88 ASP ASP B . n B 1 89 ASP 89 89 89 ASP ASP B . n B 1 90 VAL 90 90 90 VAL VAL B . n B 1 91 ILE 91 91 91 ILE ILE B . n B 1 92 GLU 92 92 92 GLU GLU B . n B 1 93 GLU 93 93 93 GLU GLU B . n B 1 94 LEU 94 94 94 LEU LEU B . n B 1 95 LYS 95 95 95 LYS LYS B . n B 1 96 GLU 96 96 96 GLU GLU B . n B 1 97 LYS 97 97 97 LYS LYS B . n B 1 98 LEU 98 98 98 LEU LEU B . n B 1 99 LYS 99 99 99 LYS LYS B . n B 1 100 LYS 100 100 100 LYS LYS B . n B 1 101 GLY 101 101 101 GLY GLY B . n B 1 102 GLU 102 102 102 GLU GLU B . n B 1 103 ASP 103 103 103 ASP ASP B . n B 1 104 PHE 104 104 104 PHE PHE B . n B 1 105 MET 105 105 105 MET MET B . n B 1 106 ILE 106 106 106 ILE ILE B . n B 1 107 ILE 107 107 107 ILE ILE B . n B 1 108 VAL 108 108 108 VAL VAL B . n B 1 109 GLY 109 109 109 GLY GLY B . n B 1 110 ALA 110 110 110 ALA ALA B . n B 1 111 GLU 111 111 111 GLU GLU B . n B 1 112 LYS 112 112 112 LYS LYS B . n B 1 113 VAL 113 113 113 VAL VAL B . n B 1 114 PRO 114 114 114 PRO PRO B . n B 1 115 ARG 115 115 115 ARG ARG B . n B 1 116 GLU 116 116 116 GLU GLU B . n B 1 117 VAL 117 117 117 VAL VAL B . n B 1 118 TYR 118 118 118 TYR TYR B . n B 1 119 GLU 119 119 119 GLU GLU B . n B 1 120 LEU 120 120 120 LEU LEU B . n B 1 121 ALA 121 121 121 ALA ALA B . n B 1 122 ASP 122 122 122 ASP ASP B . n B 1 123 TYR 123 123 123 TYR TYR B . n B 1 124 ASN 124 124 124 ASN ASN B . n B 1 125 VAL 125 125 125 VAL VAL B . n B 1 126 ALA 126 126 126 ALA ALA B . n B 1 127 ILE 127 127 127 ILE ILE B . n B 1 128 GLY 128 128 128 GLY GLY B . n B 1 129 ASN 129 129 129 ASN ASN B . n B 1 130 GLN 130 130 130 GLN GLN B . n B 1 131 PRO 131 131 131 PRO PRO B . n B 1 132 HIS 132 132 132 HIS HIS B . n B 1 133 SER 133 133 133 SER SER B . n B 1 134 GLU 134 134 134 GLU GLU B . n B 1 135 VAL 135 135 135 VAL VAL B . n B 1 136 ALA 136 136 136 ALA ALA B . n B 1 137 ALA 137 137 137 ALA ALA B . n B 1 138 LEU 138 138 138 LEU LEU B . n B 1 139 ALA 139 139 139 ALA ALA B . n B 1 140 VAL 140 140 140 VAL VAL B . n B 1 141 LEU 141 141 141 LEU LEU B . n B 1 142 LEU 142 142 142 LEU LEU B . n B 1 143 ASP 143 143 143 ASP ASP B . n B 1 144 ARG 144 144 144 ARG ARG B . n B 1 145 LEU 145 145 145 LEU LEU B . n B 1 146 LEU 146 146 146 LEU LEU B . n B 1 147 GLU 147 147 147 GLU GLU B . n B 1 148 GLY 148 148 148 GLY GLY B . n B 1 149 LYS 149 149 149 LYS LYS B . n B 1 150 GLY 150 150 150 GLY GLY B . n B 1 151 LEU 151 151 151 LEU LEU B . n B 1 152 LYS 152 152 152 LYS LYS B . n B 1 153 LYS 153 153 153 LYS LYS B . n B 1 154 GLU 154 154 154 GLU GLU B . n B 1 155 PHE 155 155 155 PHE PHE B . n B 1 156 LYS 156 156 156 LYS LYS B . n B 1 157 GLY 157 157 157 GLY GLY B . n B 1 158 ALA 158 158 158 ALA ALA B . n B 1 159 LYS 159 159 159 LYS LYS B . n B 1 160 ILE 160 160 160 ILE ILE B . n B 1 161 LYS 161 161 161 LYS LYS B . n B 1 162 ILE 162 162 162 ILE ILE B . n B 1 163 VAL 163 163 163 VAL VAL B . n B 1 164 PRO 164 164 164 PRO PRO B . n B 1 165 GLN 165 165 165 GLN GLN B . n B 1 166 ALA 166 166 166 ALA ALA B . n B 1 167 ARG 167 167 167 ARG ARG B . n B 1 168 GLY 168 168 168 GLY GLY B . n B 1 169 LYS 169 169 169 LYS LYS B . n B 1 170 LYS 170 170 170 LYS LYS B . n B 1 171 VAL 171 171 171 VAL VAL B . n B 1 172 VAL 172 172 172 VAL VAL B . n B 1 173 GLU 173 173 173 GLU GLU B . n B 1 174 VAL 174 174 174 VAL VAL B . n B 1 175 GLN 175 175 ? ? ? B . n B 1 176 GLY 176 176 ? ? ? B . n B 1 177 TYR 177 177 ? ? ? B . n B 1 178 ALA 178 178 ? ? ? B . n B 1 179 GLU 179 179 ? ? ? B . n B 1 180 GLN 180 180 ? ? ? B . n B 1 181 ASP 181 181 ? ? ? B . n B 1 182 LYS 182 182 ? ? ? B . n B 1 183 ALA 183 183 ? ? ? B . n B 1 184 GLU 184 184 ? ? ? B . n B 1 185 GLY 185 185 ? ? ? B . n B 1 186 LYS 186 186 ? ? ? B . n B 1 187 ALA 187 187 ? ? ? B . n B 1 188 THR 188 188 ? ? ? B . n B 1 189 PRO 189 189 ? ? ? B . n B 1 190 GLY 190 190 ? ? ? B . n B 1 191 LYS 191 191 ? ? ? B . n B 1 192 ASN 192 192 ? ? ? B . n B 1 193 TRP 193 193 ? ? ? B . n B 1 194 GLU 194 194 ? ? ? B . n B 1 195 ASN 195 195 ? ? ? B . n B 1 196 HIS 196 196 ? ? ? B . n B 1 197 HIS 197 197 ? ? ? B . n B 1 198 HIS 198 198 ? ? ? B . n B 1 199 HIS 199 199 ? ? ? B . n B 1 200 HIS 200 200 ? ? ? B . n B 1 201 HIS 201 201 ? ? ? B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MTA 1 400 400 MTA MTA A . D 3 SAM 1 500 500 SAM SAM B . E 4 HOH 1 401 1 HOH TIP A . E 4 HOH 2 402 2 HOH TIP A . E 4 HOH 3 403 4 HOH TIP A . E 4 HOH 4 404 6 HOH TIP A . E 4 HOH 5 405 9 HOH TIP A . E 4 HOH 6 406 10 HOH TIP A . E 4 HOH 7 407 11 HOH TIP A . E 4 HOH 8 408 12 HOH TIP A . E 4 HOH 9 409 13 HOH TIP A . E 4 HOH 10 410 19 HOH TIP A . E 4 HOH 11 411 23 HOH TIP A . E 4 HOH 12 412 24 HOH TIP A . E 4 HOH 13 413 25 HOH TIP A . E 4 HOH 14 414 29 HOH TIP A . E 4 HOH 15 415 31 HOH TIP A . E 4 HOH 16 416 32 HOH TIP A . E 4 HOH 17 417 33 HOH TIP A . E 4 HOH 18 418 36 HOH TIP A . E 4 HOH 19 419 39 HOH TIP A . E 4 HOH 20 420 42 HOH TIP A . E 4 HOH 21 421 43 HOH TIP A . E 4 HOH 22 422 45 HOH TIP A . E 4 HOH 23 423 46 HOH TIP A . E 4 HOH 24 424 47 HOH TIP A . E 4 HOH 25 425 48 HOH TIP A . E 4 HOH 26 426 50 HOH TIP A . E 4 HOH 27 427 52 HOH TIP A . E 4 HOH 28 428 53 HOH TIP A . E 4 HOH 29 429 55 HOH TIP A . E 4 HOH 30 430 57 HOH TIP A . E 4 HOH 31 431 58 HOH TIP A . E 4 HOH 32 432 59 HOH TIP A . E 4 HOH 33 433 60 HOH TIP A . E 4 HOH 34 434 63 HOH TIP A . E 4 HOH 35 435 64 HOH TIP A . E 4 HOH 36 436 65 HOH TIP A . E 4 HOH 37 437 66 HOH TIP A . E 4 HOH 38 438 74 HOH TIP A . E 4 HOH 39 439 75 HOH TIP A . E 4 HOH 40 440 76 HOH TIP A . E 4 HOH 41 441 79 HOH TIP A . E 4 HOH 42 442 85 HOH TIP A . E 4 HOH 43 443 86 HOH TIP A . E 4 HOH 44 444 87 HOH TIP A . E 4 HOH 45 445 90 HOH TIP A . E 4 HOH 46 446 91 HOH TIP A . E 4 HOH 47 447 93 HOH TIP A . E 4 HOH 48 448 95 HOH TIP A . E 4 HOH 49 449 96 HOH TIP A . E 4 HOH 50 450 99 HOH TIP A . E 4 HOH 51 451 100 HOH TIP A . F 4 HOH 1 501 3 HOH TIP B . F 4 HOH 2 502 5 HOH TIP B . F 4 HOH 3 503 7 HOH TIP B . F 4 HOH 4 504 8 HOH TIP B . F 4 HOH 5 505 14 HOH TIP B . F 4 HOH 6 506 15 HOH TIP B . F 4 HOH 7 507 16 HOH TIP B . F 4 HOH 8 508 17 HOH TIP B . F 4 HOH 9 509 18 HOH TIP B . F 4 HOH 10 510 20 HOH TIP B . F 4 HOH 11 511 21 HOH TIP B . F 4 HOH 12 512 22 HOH TIP B . F 4 HOH 13 513 26 HOH TIP B . F 4 HOH 14 514 27 HOH TIP B . F 4 HOH 15 515 28 HOH TIP B . F 4 HOH 16 516 30 HOH TIP B . F 4 HOH 17 517 34 HOH TIP B . F 4 HOH 18 518 35 HOH TIP B . F 4 HOH 19 519 37 HOH TIP B . F 4 HOH 20 520 38 HOH TIP B . F 4 HOH 21 521 40 HOH TIP B . F 4 HOH 22 522 41 HOH TIP B . F 4 HOH 23 523 44 HOH TIP B . F 4 HOH 24 524 49 HOH TIP B . F 4 HOH 25 525 51 HOH TIP B . F 4 HOH 26 526 54 HOH TIP B . F 4 HOH 27 527 56 HOH TIP B . F 4 HOH 28 528 61 HOH TIP B . F 4 HOH 29 529 62 HOH TIP B . F 4 HOH 30 530 67 HOH TIP B . F 4 HOH 31 531 68 HOH TIP B . F 4 HOH 32 532 69 HOH TIP B . F 4 HOH 33 533 70 HOH TIP B . F 4 HOH 34 534 71 HOH TIP B . F 4 HOH 35 535 72 HOH TIP B . F 4 HOH 36 536 73 HOH TIP B . F 4 HOH 37 537 77 HOH TIP B . F 4 HOH 38 538 78 HOH TIP B . F 4 HOH 39 539 80 HOH TIP B . F 4 HOH 40 540 81 HOH TIP B . F 4 HOH 41 541 82 HOH TIP B . F 4 HOH 42 542 83 HOH TIP B . F 4 HOH 43 543 84 HOH TIP B . F 4 HOH 44 544 88 HOH TIP B . F 4 HOH 45 545 89 HOH TIP B . F 4 HOH 46 546 92 HOH TIP B . F 4 HOH 47 547 94 HOH TIP B . F 4 HOH 48 548 97 HOH TIP B . F 4 HOH 49 549 98 HOH TIP B . F 4 HOH 50 550 101 HOH TIP B . # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal CNS refinement 1.1 ? 1 HKL-2000 'data collection' . ? 2 HKL-2000 'data reduction' . ? 3 SCALEPACK 'data scaling' . ? 4 SHARP phasing . ? 5 # _cell.entry_id 2YY8 _cell.length_a 56.151 _cell.length_b 56.151 _cell.length_c 121.844 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 2YY8 _symmetry.space_group_name_H-M 'P 32' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 145 _symmetry.space_group_name_Hall ? # _exptl.entry_id 2YY8 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 2 # loop_ _exptl_crystal.id _exptl_crystal.density_meas _exptl_crystal.density_Matthews _exptl_crystal.density_percent_sol _exptl_crystal.description _exptl_crystal.F_000 _exptl_crystal.preparation 1 ? 2.43 49.42 ? ? ? 2 ? ? ? ? ? ? # loop_ _exptl_crystal_grow.crystal_id _exptl_crystal_grow.method _exptl_crystal_grow.temp _exptl_crystal_grow.temp_details _exptl_crystal_grow.pH _exptl_crystal_grow.pdbx_details _exptl_crystal_grow.pdbx_pH_range 1 'VAPOR DIFFUSION, HANGING DROP' 293 ? 4.5 ;20% PEG3000 100mM Acetate (pH4.5), VAPOR DIFFUSION, HANGING DROP, temperature 293K ; . 2 'VAPOR DIFFUSION, HANGING DROP' 293 ? 4.5 ;20% PEG3000 100mM Acetate (pH4.5), VAPOR DIFFUSION, HANGING DROP, temperature 293K ; . # loop_ _diffrn.id _diffrn.ambient_temp _diffrn.ambient_temp_details _diffrn.crystal_id 1 100 ? 1 2 100 ? 1 # loop_ _diffrn_detector.diffrn_id _diffrn_detector.detector _diffrn_detector.type _diffrn_detector.pdbx_collection_date _diffrn_detector.details 1 CCD 'ADSC QUANTUM 210' 2006-11-05 ? 2 CCD 'ADSC QUANTUM 210' 2006-11-05 ? # loop_ _diffrn_radiation.diffrn_id _diffrn_radiation.wavelength_id _diffrn_radiation.pdbx_monochromatic_or_laue_m_l _diffrn_radiation.monochromator _diffrn_radiation.pdbx_diffrn_protocol _diffrn_radiation.pdbx_scattering_type 1 1 M ? 'SINGLE WAVELENGTH' x-ray 2 1 M ? MAD x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 1.0000 1.0 2 0.9793 1.0 3 0.9795 1.0 4 0.9643 1.0 # loop_ _diffrn_source.diffrn_id _diffrn_source.source _diffrn_source.type _diffrn_source.pdbx_synchrotron_site _diffrn_source.pdbx_synchrotron_beamline _diffrn_source.pdbx_wavelength _diffrn_source.pdbx_wavelength_list 1 SYNCHROTRON 'PHOTON FACTORY BEAMLINE AR-NW12A' 'Photon Factory' AR-NW12A ? 1.0000 2 SYNCHROTRON 'PHOTON FACTORY BEAMLINE AR-NW12A' 'Photon Factory' AR-NW12A ? '0.9793, 0.9795, 0.9643' # _reflns.entry_id 2YY8 _reflns.observed_criterion_sigma_I 0 _reflns.observed_criterion_sigma_F 0 _reflns.d_resolution_low 50 _reflns.d_resolution_high 2.48 _reflns.number_obs 15052 _reflns.number_all ? _reflns.percent_possible_obs 98.2 _reflns.pdbx_Rmerge_I_obs 0.064 _reflns.pdbx_Rsym_value 0.056 _reflns.pdbx_netI_over_sigmaI 27.1 _reflns.B_iso_Wilson_estimate 40.5 _reflns.pdbx_redundancy 4.6 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1,2 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 2.48 _reflns_shell.d_res_low 2.57 _reflns_shell.percent_possible_all 92.8 _reflns_shell.Rmerge_I_obs 0.274 _reflns_shell.pdbx_Rsym_value 0.269 _reflns_shell.meanI_over_sigI_obs 4.9 _reflns_shell.pdbx_redundancy 3.8 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 1451 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 2YY8 _refine.ls_number_reflns_obs 14633 _refine.ls_number_reflns_all 14835 _refine.pdbx_ls_sigma_I 0 _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF 1875931.18 _refine.pdbx_data_cutoff_low_absF 0.000000 _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 45.17 _refine.ls_d_res_high 2.48 _refine.ls_percent_reflns_obs 96.2 _refine.ls_R_factor_obs 0.216 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.216 _refine.ls_R_factor_R_free 0.268 _refine.ls_R_factor_R_free_error 0.010 _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.0 _refine.ls_number_reflns_R_free 730 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 41.0 _refine.aniso_B[1][1] -4.50 _refine.aniso_B[2][2] -4.50 _refine.aniso_B[3][3] 8.99 _refine.aniso_B[1][2] 3.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'FLAT MODEL' _refine.solvent_model_param_ksol 0.372568 _refine.solvent_model_param_bsol 42.6085 _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_isotropic_thermal_model RESTRAINED _refine.pdbx_stereochemistry_target_values 'Engh & Huber' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 2YY8 _refine_analyze.Luzzati_coordinate_error_obs 0.30 _refine_analyze.Luzzati_sigma_a_obs 0.24 _refine_analyze.Luzzati_d_res_low_obs 5.00 _refine_analyze.Luzzati_coordinate_error_free 0.41 _refine_analyze.Luzzati_sigma_a_free 0.33 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2772 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 47 _refine_hist.number_atoms_solvent 101 _refine_hist.number_atoms_total 2920 _refine_hist.d_res_high 2.48 _refine_hist.d_res_low 45.17 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d 0.007 ? ? ? 'X-RAY DIFFRACTION' ? c_bond_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_bond_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg 1.7 ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d 23.4 ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d 2.22 ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_mcbond_it 1.47 1.50 ? ? 'X-RAY DIFFRACTION' ? c_mcangle_it 2.46 2.00 ? ? 'X-RAY DIFFRACTION' ? c_scbond_it 2.21 2.00 ? ? 'X-RAY DIFFRACTION' ? c_scangle_it 3.38 2.50 ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 8 _refine_ls_shell.d_res_high 2.48 _refine_ls_shell.d_res_low 2.59 _refine_ls_shell.number_reflns_R_work 1669 _refine_ls_shell.R_factor_R_work 0.255 _refine_ls_shell.percent_reflns_obs 91.8 _refine_ls_shell.R_factor_R_free 0.300 _refine_ls_shell.R_factor_R_free_error 0.034 _refine_ls_shell.percent_reflns_R_free 4.5 _refine_ls_shell.number_reflns_R_free 79 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs 1451 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # loop_ _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file _pdbx_xplor_file.pdbx_refine_id 1 protein_rep.param protein.top 'X-RAY DIFFRACTION' 2 water_rep.param water.top 'X-RAY DIFFRACTION' 3 ligand.param ligand.top 'X-RAY DIFFRACTION' # _database_PDB_matrix.entry_id 2YY8 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 2YY8 _struct.title ;Crystal structure of archaeal tRNA-methylase for position 56 (aTrm56) from Pyrococcus horikoshii, complexed with S-adenosyl-L-methionine ; _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2YY8 _struct_keywords.pdbx_keywords TRANSFERASE _struct_keywords.text ;deep trefoil knot, Structural Genomics, NPPSFA, National Project on Protein Structural and Functional Analyses, RIKEN Structural Genomics/Proteomics Initiative, RSGI, TRANSFERASE ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 3 ? E N N 4 ? F N N 4 ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Y461_PYRHO _struct_ref.pdbx_db_accession O58214 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MIVVLRLGHRPERDKRVTTHVALTARAFGADGIIIASEEDEKVKESVEDVVKRWGGPFFIEFNRNWRKVMKEFTGVKVHL TMYGLHVDDVIEELKEKLKKGEDFMIIVGAEKVPREVYELADYNVAIGNQPHSEVAALAVLLDRLLEGKGLKKEFKGAKI KIVPQARGKKVVEVQGYAEQDKAEGKATPGKNWEN ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2YY8 A 1 ? 195 ? O58214 1 ? 195 ? 1 195 2 1 2YY8 B 1 ? 195 ? O58214 1 ? 195 ? 1 195 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2YY8 HIS A 196 ? UNP O58214 ? ? 'expression tag' 196 1 1 2YY8 HIS A 197 ? UNP O58214 ? ? 'expression tag' 197 2 1 2YY8 HIS A 198 ? UNP O58214 ? ? 'expression tag' 198 3 1 2YY8 HIS A 199 ? UNP O58214 ? ? 'expression tag' 199 4 1 2YY8 HIS A 200 ? UNP O58214 ? ? 'expression tag' 200 5 1 2YY8 HIS A 201 ? UNP O58214 ? ? 'expression tag' 201 6 2 2YY8 HIS B 196 ? UNP O58214 ? ? 'expression tag' 196 7 2 2YY8 HIS B 197 ? UNP O58214 ? ? 'expression tag' 197 8 2 2YY8 HIS B 198 ? UNP O58214 ? ? 'expression tag' 198 9 2 2YY8 HIS B 199 ? UNP O58214 ? ? 'expression tag' 199 10 2 2YY8 HIS B 200 ? UNP O58214 ? ? 'expression tag' 200 11 2 2YY8 HIS B 201 ? UNP O58214 ? ? 'expression tag' 201 12 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 5240 ? 1 MORE -19.2 ? 1 'SSA (A^2)' 14690 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 LYS A 15 ? PHE A 28 ? LYS A 15 PHE A 28 1 ? 14 HELX_P HELX_P2 2 ASP A 40 ? GLY A 55 ? ASP A 40 GLY A 55 1 ? 16 HELX_P HELX_P3 3 ASN A 65 ? PHE A 73 ? ASN A 65 PHE A 73 1 ? 9 HELX_P HELX_P4 4 VAL A 87 ? LYS A 100 ? VAL A 87 LYS A 100 1 ? 14 HELX_P HELX_P5 5 PRO A 114 ? ALA A 121 ? PRO A 114 ALA A 121 1 ? 8 HELX_P HELX_P6 6 SER A 133 ? LEU A 146 ? SER A 133 LEU A 146 1 ? 14 HELX_P HELX_P7 7 GLY A 148 ? LYS A 153 ? GLY A 148 LYS A 153 5 ? 6 HELX_P HELX_P8 8 ARG B 10 ? PHE B 28 ? ARG B 10 PHE B 28 1 ? 19 HELX_P HELX_P9 9 ASP B 40 ? GLY B 55 ? ASP B 40 GLY B 55 1 ? 16 HELX_P HELX_P10 10 ASN B 65 ? PHE B 73 ? ASN B 65 PHE B 73 1 ? 9 HELX_P HELX_P11 11 VAL B 90 ? LYS B 100 ? VAL B 90 LYS B 100 1 ? 11 HELX_P HELX_P12 12 PRO B 114 ? ALA B 121 ? PRO B 114 ALA B 121 1 ? 8 HELX_P HELX_P13 13 SER B 133 ? GLU B 147 ? SER B 133 GLU B 147 1 ? 15 HELX_P HELX_P14 14 LYS B 149 ? LYS B 153 ? LYS B 149 LYS B 153 5 ? 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 6 ? B ? 2 ? C ? 7 ? D ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? parallel A 2 3 ? parallel A 3 4 ? parallel A 4 5 ? parallel A 5 6 ? parallel B 1 2 ? anti-parallel C 1 2 ? parallel C 2 3 ? parallel C 3 4 ? parallel C 4 5 ? parallel C 5 6 ? parallel C 6 7 ? parallel D 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 GLY A 32 ? ILE A 35 ? GLY A 32 ILE A 35 A 2 ILE A 2 ? ARG A 6 ? ILE A 2 ARG A 6 A 3 PHE A 104 ? VAL A 108 ? PHE A 104 VAL A 108 A 4 VAL A 76 ? LEU A 80 ? VAL A 76 LEU A 80 A 5 TYR A 123 ? ALA A 126 ? TYR A 123 ALA A 126 A 6 LEU A 85 ? HIS A 86 ? LEU A 85 HIS A 86 B 1 ILE A 160 ? ILE A 162 ? ILE A 160 ILE A 162 B 2 VAL A 171 ? GLU A 173 ? VAL A 171 GLU A 173 C 1 PHE B 59 ? PHE B 62 ? PHE B 59 PHE B 62 C 2 GLY B 32 ? ILE B 35 ? GLY B 32 ILE B 35 C 3 ILE B 2 ? ARG B 6 ? ILE B 2 ARG B 6 C 4 PHE B 104 ? VAL B 108 ? PHE B 104 VAL B 108 C 5 VAL B 76 ? LEU B 80 ? VAL B 76 LEU B 80 C 6 TYR B 123 ? ALA B 126 ? TYR B 123 ALA B 126 C 7 LEU B 85 ? HIS B 86 ? LEU B 85 HIS B 86 D 1 ILE B 160 ? ILE B 162 ? ILE B 160 ILE B 162 D 2 VAL B 171 ? GLU B 173 ? VAL B 171 GLU B 173 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O ILE A 34 ? O ILE A 34 N ARG A 6 ? N ARG A 6 A 2 3 N LEU A 5 ? N LEU A 5 O ILE A 106 ? O ILE A 106 A 3 4 O MET A 105 ? O MET A 105 N VAL A 78 ? N VAL A 78 A 4 5 N HIS A 79 ? N HIS A 79 O TYR A 123 ? O TYR A 123 A 5 6 O ALA A 126 ? O ALA A 126 N LEU A 85 ? N LEU A 85 B 1 2 N LYS A 161 ? N LYS A 161 O VAL A 172 ? O VAL A 172 C 1 2 O GLU B 61 ? O GLU B 61 N ILE B 35 ? N ILE B 35 C 2 3 O ILE B 34 ? O ILE B 34 N VAL B 4 ? N VAL B 4 C 3 4 N LEU B 5 ? N LEU B 5 O ILE B 106 ? O ILE B 106 C 4 5 O MET B 105 ? O MET B 105 N VAL B 76 ? N VAL B 76 C 5 6 N HIS B 79 ? N HIS B 79 O TYR B 123 ? O TYR B 123 C 6 7 O ALA B 126 ? O ALA B 126 N LEU B 85 ? N LEU B 85 D 1 2 N LYS B 161 ? N LYS B 161 O VAL B 172 ? O VAL B 172 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software B SAM 500 ? 13 'BINDING SITE FOR RESIDUE SAM B 500' AC2 Software A MTA 400 ? 13 'BINDING SITE FOR RESIDUE MTA A 400' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 13 LEU B 80 ? LEU B 80 . ? 1_555 ? 2 AC1 13 THR B 81 ? THR B 81 . ? 1_555 ? 3 AC1 13 MET B 82 ? MET B 82 . ? 1_555 ? 4 AC1 13 GLY B 109 ? GLY B 109 . ? 1_555 ? 5 AC1 13 ALA B 110 ? ALA B 110 . ? 1_555 ? 6 AC1 13 LYS B 112 ? LYS B 112 . ? 1_555 ? 7 AC1 13 ILE B 127 ? ILE B 127 . ? 1_555 ? 8 AC1 13 GLY B 128 ? GLY B 128 . ? 1_555 ? 9 AC1 13 GLN B 130 ? GLN B 130 . ? 1_555 ? 10 AC1 13 HIS B 132 ? HIS B 132 . ? 1_555 ? 11 AC1 13 SER B 133 ? SER B 133 . ? 1_555 ? 12 AC1 13 GLU B 134 ? GLU B 134 . ? 1_555 ? 13 AC1 13 ALA B 137 ? ALA B 137 . ? 1_555 ? 14 AC2 13 LEU A 80 ? LEU A 80 . ? 1_555 ? 15 AC2 13 THR A 81 ? THR A 81 . ? 1_555 ? 16 AC2 13 MET A 82 ? MET A 82 . ? 1_555 ? 17 AC2 13 GLY A 109 ? GLY A 109 . ? 1_555 ? 18 AC2 13 ALA A 110 ? ALA A 110 . ? 1_555 ? 19 AC2 13 GLU A 111 ? GLU A 111 . ? 1_555 ? 20 AC2 13 ALA A 126 ? ALA A 126 . ? 1_555 ? 21 AC2 13 ILE A 127 ? ILE A 127 . ? 1_555 ? 22 AC2 13 GLY A 128 ? GLY A 128 . ? 1_555 ? 23 AC2 13 GLN A 130 ? GLN A 130 . ? 1_555 ? 24 AC2 13 HIS A 132 ? HIS A 132 . ? 1_555 ? 25 AC2 13 GLU A 134 ? GLU A 134 . ? 1_555 ? 26 AC2 13 ALA A 137 ? ALA A 137 . ? 1_555 ? # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 C _pdbx_validate_rmsd_angle.auth_asym_id_1 A _pdbx_validate_rmsd_angle.auth_comp_id_1 ARG _pdbx_validate_rmsd_angle.auth_seq_id_1 10 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 N _pdbx_validate_rmsd_angle.auth_asym_id_2 A _pdbx_validate_rmsd_angle.auth_comp_id_2 PRO _pdbx_validate_rmsd_angle.auth_seq_id_2 11 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 CA _pdbx_validate_rmsd_angle.auth_asym_id_3 A _pdbx_validate_rmsd_angle.auth_comp_id_3 PRO _pdbx_validate_rmsd_angle.auth_seq_id_3 11 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 131.04 _pdbx_validate_rmsd_angle.angle_target_value 119.30 _pdbx_validate_rmsd_angle.angle_deviation 11.74 _pdbx_validate_rmsd_angle.angle_standard_deviation 1.50 _pdbx_validate_rmsd_angle.linker_flag Y # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 PRO A 11 ? ? -45.49 -12.17 2 1 LYS A 15 ? ? 56.18 -65.54 3 1 SER A 37 ? ? 170.98 170.05 4 1 GLU A 61 ? ? -178.17 133.30 5 1 ALA A 110 ? ? -115.49 -135.99 6 1 LYS A 112 ? ? 75.83 112.17 7 1 HIS A 132 ? ? -147.40 -128.60 8 1 LEU A 151 ? ? -76.43 24.29 9 1 GLU B 12 ? ? -55.63 -4.74 10 1 ARG B 13 ? ? -141.10 -48.92 11 1 ALA B 110 ? ? -133.89 -37.83 12 1 LYS B 112 ? ? 36.10 99.28 13 1 HIS B 132 ? ? -141.64 -115.12 14 1 ARG B 167 ? ? -153.94 73.21 # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'NPPSFA, National Project on Protein Structural and Functional Analyses' _pdbx_SG_project.full_name_of_center 'RIKEN Structural Genomics/Proteomics Initiative' _pdbx_SG_project.initial_of_center RSGI # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A ARG 13 ? A ARG 13 2 1 Y 1 A GLY 176 ? A GLY 176 3 1 Y 1 A TYR 177 ? A TYR 177 4 1 Y 1 A ALA 178 ? A ALA 178 5 1 Y 1 A GLU 179 ? A GLU 179 6 1 Y 1 A GLN 180 ? A GLN 180 7 1 Y 1 A ASP 181 ? A ASP 181 8 1 Y 1 A LYS 182 ? A LYS 182 9 1 Y 1 A ALA 183 ? A ALA 183 10 1 Y 1 A GLU 184 ? A GLU 184 11 1 Y 1 A GLY 185 ? A GLY 185 12 1 Y 1 A LYS 186 ? A LYS 186 13 1 Y 1 A ALA 187 ? A ALA 187 14 1 Y 1 A THR 188 ? A THR 188 15 1 Y 1 A PRO 189 ? A PRO 189 16 1 Y 1 A GLY 190 ? A GLY 190 17 1 Y 1 A LYS 191 ? A LYS 191 18 1 Y 1 A ASN 192 ? A ASN 192 19 1 Y 1 A TRP 193 ? A TRP 193 20 1 Y 1 A GLU 194 ? A GLU 194 21 1 Y 1 A ASN 195 ? A ASN 195 22 1 Y 1 A HIS 196 ? A HIS 196 23 1 Y 1 A HIS 197 ? A HIS 197 24 1 Y 1 A HIS 198 ? A HIS 198 25 1 Y 1 A HIS 199 ? A HIS 199 26 1 Y 1 A HIS 200 ? A HIS 200 27 1 Y 1 A HIS 201 ? A HIS 201 28 1 Y 1 B GLN 175 ? B GLN 175 29 1 Y 1 B GLY 176 ? B GLY 176 30 1 Y 1 B TYR 177 ? B TYR 177 31 1 Y 1 B ALA 178 ? B ALA 178 32 1 Y 1 B GLU 179 ? B GLU 179 33 1 Y 1 B GLN 180 ? B GLN 180 34 1 Y 1 B ASP 181 ? B ASP 181 35 1 Y 1 B LYS 182 ? B LYS 182 36 1 Y 1 B ALA 183 ? B ALA 183 37 1 Y 1 B GLU 184 ? B GLU 184 38 1 Y 1 B GLY 185 ? B GLY 185 39 1 Y 1 B LYS 186 ? B LYS 186 40 1 Y 1 B ALA 187 ? B ALA 187 41 1 Y 1 B THR 188 ? B THR 188 42 1 Y 1 B PRO 189 ? B PRO 189 43 1 Y 1 B GLY 190 ? B GLY 190 44 1 Y 1 B LYS 191 ? B LYS 191 45 1 Y 1 B ASN 192 ? B ASN 192 46 1 Y 1 B TRP 193 ? B TRP 193 47 1 Y 1 B GLU 194 ? B GLU 194 48 1 Y 1 B ASN 195 ? B ASN 195 49 1 Y 1 B HIS 196 ? B HIS 196 50 1 Y 1 B HIS 197 ? B HIS 197 51 1 Y 1 B HIS 198 ? B HIS 198 52 1 Y 1 B HIS 199 ? B HIS 199 53 1 Y 1 B HIS 200 ? B HIS 200 54 1 Y 1 B HIS 201 ? B HIS 201 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 GLN N N N N 74 GLN CA C N S 75 GLN C C N N 76 GLN O O N N 77 GLN CB C N N 78 GLN CG C N N 79 GLN CD C N N 80 GLN OE1 O N N 81 GLN NE2 N N N 82 GLN OXT O N N 83 GLN H H N N 84 GLN H2 H N N 85 GLN HA H N N 86 GLN HB2 H N N 87 GLN HB3 H N N 88 GLN HG2 H N N 89 GLN HG3 H N N 90 GLN HE21 H N N 91 GLN HE22 H N N 92 GLN HXT H N N 93 GLU N N N N 94 GLU CA C N S 95 GLU C C N N 96 GLU O O N N 97 GLU CB C N N 98 GLU CG C N N 99 GLU CD C N N 100 GLU OE1 O N N 101 GLU OE2 O N N 102 GLU OXT O N N 103 GLU H H N N 104 GLU H2 H N N 105 GLU HA H N N 106 GLU HB2 H N N 107 GLU HB3 H N N 108 GLU HG2 H N N 109 GLU HG3 H N N 110 GLU HE2 H N N 111 GLU HXT H N N 112 GLY N N N N 113 GLY CA C N N 114 GLY C C N N 115 GLY O O N N 116 GLY OXT O N N 117 GLY H H N N 118 GLY H2 H N N 119 GLY HA2 H N N 120 GLY HA3 H N N 121 GLY HXT H N N 122 HIS N N N N 123 HIS CA C N S 124 HIS C C N N 125 HIS O O N N 126 HIS CB C N N 127 HIS CG C Y N 128 HIS ND1 N Y N 129 HIS CD2 C Y N 130 HIS CE1 C Y N 131 HIS NE2 N Y N 132 HIS OXT O N N 133 HIS H H N N 134 HIS H2 H N N 135 HIS HA H N N 136 HIS HB2 H N N 137 HIS HB3 H N N 138 HIS HD1 H N N 139 HIS HD2 H N N 140 HIS HE1 H N N 141 HIS HE2 H N N 142 HIS HXT H N N 143 HOH O O N N 144 HOH H1 H N N 145 HOH H2 H N N 146 ILE N N N N 147 ILE CA C N S 148 ILE C C N N 149 ILE O O N N 150 ILE CB C N S 151 ILE CG1 C N N 152 ILE CG2 C N N 153 ILE CD1 C N N 154 ILE OXT O N N 155 ILE H H N N 156 ILE H2 H N N 157 ILE HA H N N 158 ILE HB H N N 159 ILE HG12 H N N 160 ILE HG13 H N N 161 ILE HG21 H N N 162 ILE HG22 H N N 163 ILE HG23 H N N 164 ILE HD11 H N N 165 ILE HD12 H N N 166 ILE HD13 H N N 167 ILE HXT H N N 168 LEU N N N N 169 LEU CA C N S 170 LEU C C N N 171 LEU O O N N 172 LEU CB C N N 173 LEU CG C N N 174 LEU CD1 C N N 175 LEU CD2 C N N 176 LEU OXT O N N 177 LEU H H N N 178 LEU H2 H N N 179 LEU HA H N N 180 LEU HB2 H N N 181 LEU HB3 H N N 182 LEU HG H N N 183 LEU HD11 H N N 184 LEU HD12 H N N 185 LEU HD13 H N N 186 LEU HD21 H N N 187 LEU HD22 H N N 188 LEU HD23 H N N 189 LEU HXT H N N 190 LYS N N N N 191 LYS CA C N S 192 LYS C C N N 193 LYS O O N N 194 LYS CB C N N 195 LYS CG C N N 196 LYS CD C N N 197 LYS CE C N N 198 LYS NZ N N N 199 LYS OXT O N N 200 LYS H H N N 201 LYS H2 H N N 202 LYS HA H N N 203 LYS HB2 H N N 204 LYS HB3 H N N 205 LYS HG2 H N N 206 LYS HG3 H N N 207 LYS HD2 H N N 208 LYS HD3 H N N 209 LYS HE2 H N N 210 LYS HE3 H N N 211 LYS HZ1 H N N 212 LYS HZ2 H N N 213 LYS HZ3 H N N 214 LYS HXT H N N 215 MET N N N N 216 MET CA C N S 217 MET C C N N 218 MET O O N N 219 MET CB C N N 220 MET CG C N N 221 MET SD S N N 222 MET CE C N N 223 MET OXT O N N 224 MET H H N N 225 MET H2 H N N 226 MET HA H N N 227 MET HB2 H N N 228 MET HB3 H N N 229 MET HG2 H N N 230 MET HG3 H N N 231 MET HE1 H N N 232 MET HE2 H N N 233 MET HE3 H N N 234 MET HXT H N N 235 MTA CS C N N 236 MTA "S5'" S N N 237 MTA "C5'" C N N 238 MTA "C4'" C N S 239 MTA "O4'" O N N 240 MTA "C2'" C N R 241 MTA "O2'" O N N 242 MTA "C3'" C N S 243 MTA "O3'" O N N 244 MTA "C1'" C N R 245 MTA N9 N Y N 246 MTA C8 C Y N 247 MTA N7 N Y N 248 MTA C5 C Y N 249 MTA C6 C Y N 250 MTA N6 N N N 251 MTA N1 N Y N 252 MTA C2 C Y N 253 MTA N3 N Y N 254 MTA C4 C Y N 255 MTA HCS1 H N N 256 MTA HCS2 H N N 257 MTA HCS3 H N N 258 MTA "H5'1" H N N 259 MTA "H5'2" H N N 260 MTA "H4'" H N N 261 MTA "H2'" H N N 262 MTA "HO2'" H N N 263 MTA "H3'" H N N 264 MTA H3T H N N 265 MTA "H1'" H N N 266 MTA H8 H N N 267 MTA H61 H N N 268 MTA H62 H N N 269 MTA H2 H N N 270 PHE N N N N 271 PHE CA C N S 272 PHE C C N N 273 PHE O O N N 274 PHE CB C N N 275 PHE CG C Y N 276 PHE CD1 C Y N 277 PHE CD2 C Y N 278 PHE CE1 C Y N 279 PHE CE2 C Y N 280 PHE CZ C Y N 281 PHE OXT O N N 282 PHE H H N N 283 PHE H2 H N N 284 PHE HA H N N 285 PHE HB2 H N N 286 PHE HB3 H N N 287 PHE HD1 H N N 288 PHE HD2 H N N 289 PHE HE1 H N N 290 PHE HE2 H N N 291 PHE HZ H N N 292 PHE HXT H N N 293 PRO N N N N 294 PRO CA C N S 295 PRO C C N N 296 PRO O O N N 297 PRO CB C N N 298 PRO CG C N N 299 PRO CD C N N 300 PRO OXT O N N 301 PRO H H N N 302 PRO HA H N N 303 PRO HB2 H N N 304 PRO HB3 H N N 305 PRO HG2 H N N 306 PRO HG3 H N N 307 PRO HD2 H N N 308 PRO HD3 H N N 309 PRO HXT H N N 310 SAM N N N N 311 SAM CA C N S 312 SAM C C N N 313 SAM O O N N 314 SAM OXT O N N 315 SAM CB C N N 316 SAM CG C N N 317 SAM SD S N S 318 SAM CE C N N 319 SAM "C5'" C N N 320 SAM "C4'" C N S 321 SAM "O4'" O N N 322 SAM "C3'" C N S 323 SAM "O3'" O N N 324 SAM "C2'" C N R 325 SAM "O2'" O N N 326 SAM "C1'" C N R 327 SAM N9 N Y N 328 SAM C8 C Y N 329 SAM N7 N Y N 330 SAM C5 C Y N 331 SAM C6 C Y N 332 SAM N6 N N N 333 SAM N1 N Y N 334 SAM C2 C Y N 335 SAM N3 N Y N 336 SAM C4 C Y N 337 SAM HN1 H N N 338 SAM HN2 H N N 339 SAM HA H N N 340 SAM HB1 H N N 341 SAM HB2 H N N 342 SAM HG1 H N N 343 SAM HG2 H N N 344 SAM HE1 H N N 345 SAM HE2 H N N 346 SAM HE3 H N N 347 SAM "H5'1" H N N 348 SAM "H5'2" H N N 349 SAM "H4'" H N N 350 SAM "H3'" H N N 351 SAM "HO3'" H N N 352 SAM "H2'" H N N 353 SAM "HO2'" H N N 354 SAM "H1'" H N N 355 SAM H8 H N N 356 SAM HN61 H N N 357 SAM HN62 H N N 358 SAM H2 H N N 359 SER N N N N 360 SER CA C N S 361 SER C C N N 362 SER O O N N 363 SER CB C N N 364 SER OG O N N 365 SER OXT O N N 366 SER H H N N 367 SER H2 H N N 368 SER HA H N N 369 SER HB2 H N N 370 SER HB3 H N N 371 SER HG H N N 372 SER HXT H N N 373 THR N N N N 374 THR CA C N S 375 THR C C N N 376 THR O O N N 377 THR CB C N R 378 THR OG1 O N N 379 THR CG2 C N N 380 THR OXT O N N 381 THR H H N N 382 THR H2 H N N 383 THR HA H N N 384 THR HB H N N 385 THR HG1 H N N 386 THR HG21 H N N 387 THR HG22 H N N 388 THR HG23 H N N 389 THR HXT H N N 390 TRP N N N N 391 TRP CA C N S 392 TRP C C N N 393 TRP O O N N 394 TRP CB C N N 395 TRP CG C Y N 396 TRP CD1 C Y N 397 TRP CD2 C Y N 398 TRP NE1 N Y N 399 TRP CE2 C Y N 400 TRP CE3 C Y N 401 TRP CZ2 C Y N 402 TRP CZ3 C Y N 403 TRP CH2 C Y N 404 TRP OXT O N N 405 TRP H H N N 406 TRP H2 H N N 407 TRP HA H N N 408 TRP HB2 H N N 409 TRP HB3 H N N 410 TRP HD1 H N N 411 TRP HE1 H N N 412 TRP HE3 H N N 413 TRP HZ2 H N N 414 TRP HZ3 H N N 415 TRP HH2 H N N 416 TRP HXT H N N 417 TYR N N N N 418 TYR CA C N S 419 TYR C C N N 420 TYR O O N N 421 TYR CB C N N 422 TYR CG C Y N 423 TYR CD1 C Y N 424 TYR CD2 C Y N 425 TYR CE1 C Y N 426 TYR CE2 C Y N 427 TYR CZ C Y N 428 TYR OH O N N 429 TYR OXT O N N 430 TYR H H N N 431 TYR H2 H N N 432 TYR HA H N N 433 TYR HB2 H N N 434 TYR HB3 H N N 435 TYR HD1 H N N 436 TYR HD2 H N N 437 TYR HE1 H N N 438 TYR HE2 H N N 439 TYR HH H N N 440 TYR HXT H N N 441 VAL N N N N 442 VAL CA C N S 443 VAL C C N N 444 VAL O O N N 445 VAL CB C N N 446 VAL CG1 C N N 447 VAL CG2 C N N 448 VAL OXT O N N 449 VAL H H N N 450 VAL H2 H N N 451 VAL HA H N N 452 VAL HB H N N 453 VAL HG11 H N N 454 VAL HG12 H N N 455 VAL HG13 H N N 456 VAL HG21 H N N 457 VAL HG22 H N N 458 VAL HG23 H N N 459 VAL HXT H N N 460 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 GLN N CA sing N N 70 GLN N H sing N N 71 GLN N H2 sing N N 72 GLN CA C sing N N 73 GLN CA CB sing N N 74 GLN CA HA sing N N 75 GLN C O doub N N 76 GLN C OXT sing N N 77 GLN CB CG sing N N 78 GLN CB HB2 sing N N 79 GLN CB HB3 sing N N 80 GLN CG CD sing N N 81 GLN CG HG2 sing N N 82 GLN CG HG3 sing N N 83 GLN CD OE1 doub N N 84 GLN CD NE2 sing N N 85 GLN NE2 HE21 sing N N 86 GLN NE2 HE22 sing N N 87 GLN OXT HXT sing N N 88 GLU N CA sing N N 89 GLU N H sing N N 90 GLU N H2 sing N N 91 GLU CA C sing N N 92 GLU CA CB sing N N 93 GLU CA HA sing N N 94 GLU C O doub N N 95 GLU C OXT sing N N 96 GLU CB CG sing N N 97 GLU CB HB2 sing N N 98 GLU CB HB3 sing N N 99 GLU CG CD sing N N 100 GLU CG HG2 sing N N 101 GLU CG HG3 sing N N 102 GLU CD OE1 doub N N 103 GLU CD OE2 sing N N 104 GLU OE2 HE2 sing N N 105 GLU OXT HXT sing N N 106 GLY N CA sing N N 107 GLY N H sing N N 108 GLY N H2 sing N N 109 GLY CA C sing N N 110 GLY CA HA2 sing N N 111 GLY CA HA3 sing N N 112 GLY C O doub N N 113 GLY C OXT sing N N 114 GLY OXT HXT sing N N 115 HIS N CA sing N N 116 HIS N H sing N N 117 HIS N H2 sing N N 118 HIS CA C sing N N 119 HIS CA CB sing N N 120 HIS CA HA sing N N 121 HIS C O doub N N 122 HIS C OXT sing N N 123 HIS CB CG sing N N 124 HIS CB HB2 sing N N 125 HIS CB HB3 sing N N 126 HIS CG ND1 sing Y N 127 HIS CG CD2 doub Y N 128 HIS ND1 CE1 doub Y N 129 HIS ND1 HD1 sing N N 130 HIS CD2 NE2 sing Y N 131 HIS CD2 HD2 sing N N 132 HIS CE1 NE2 sing Y N 133 HIS CE1 HE1 sing N N 134 HIS NE2 HE2 sing N N 135 HIS OXT HXT sing N N 136 HOH O H1 sing N N 137 HOH O H2 sing N N 138 ILE N CA sing N N 139 ILE N H sing N N 140 ILE N H2 sing N N 141 ILE CA C sing N N 142 ILE CA CB sing N N 143 ILE CA HA sing N N 144 ILE C O doub N N 145 ILE C OXT sing N N 146 ILE CB CG1 sing N N 147 ILE CB CG2 sing N N 148 ILE CB HB sing N N 149 ILE CG1 CD1 sing N N 150 ILE CG1 HG12 sing N N 151 ILE CG1 HG13 sing N N 152 ILE CG2 HG21 sing N N 153 ILE CG2 HG22 sing N N 154 ILE CG2 HG23 sing N N 155 ILE CD1 HD11 sing N N 156 ILE CD1 HD12 sing N N 157 ILE CD1 HD13 sing N N 158 ILE OXT HXT sing N N 159 LEU N CA sing N N 160 LEU N H sing N N 161 LEU N H2 sing N N 162 LEU CA C sing N N 163 LEU CA CB sing N N 164 LEU CA HA sing N N 165 LEU C O doub N N 166 LEU C OXT sing N N 167 LEU CB CG sing N N 168 LEU CB HB2 sing N N 169 LEU CB HB3 sing N N 170 LEU CG CD1 sing N N 171 LEU CG CD2 sing N N 172 LEU CG HG sing N N 173 LEU CD1 HD11 sing N N 174 LEU CD1 HD12 sing N N 175 LEU CD1 HD13 sing N N 176 LEU CD2 HD21 sing N N 177 LEU CD2 HD22 sing N N 178 LEU CD2 HD23 sing N N 179 LEU OXT HXT sing N N 180 LYS N CA sing N N 181 LYS N H sing N N 182 LYS N H2 sing N N 183 LYS CA C sing N N 184 LYS CA CB sing N N 185 LYS CA HA sing N N 186 LYS C O doub N N 187 LYS C OXT sing N N 188 LYS CB CG sing N N 189 LYS CB HB2 sing N N 190 LYS CB HB3 sing N N 191 LYS CG CD sing N N 192 LYS CG HG2 sing N N 193 LYS CG HG3 sing N N 194 LYS CD CE sing N N 195 LYS CD HD2 sing N N 196 LYS CD HD3 sing N N 197 LYS CE NZ sing N N 198 LYS CE HE2 sing N N 199 LYS CE HE3 sing N N 200 LYS NZ HZ1 sing N N 201 LYS NZ HZ2 sing N N 202 LYS NZ HZ3 sing N N 203 LYS OXT HXT sing N N 204 MET N CA sing N N 205 MET N H sing N N 206 MET N H2 sing N N 207 MET CA C sing N N 208 MET CA CB sing N N 209 MET CA HA sing N N 210 MET C O doub N N 211 MET C OXT sing N N 212 MET CB CG sing N N 213 MET CB HB2 sing N N 214 MET CB HB3 sing N N 215 MET CG SD sing N N 216 MET CG HG2 sing N N 217 MET CG HG3 sing N N 218 MET SD CE sing N N 219 MET CE HE1 sing N N 220 MET CE HE2 sing N N 221 MET CE HE3 sing N N 222 MET OXT HXT sing N N 223 MTA CS "S5'" sing N N 224 MTA CS HCS1 sing N N 225 MTA CS HCS2 sing N N 226 MTA CS HCS3 sing N N 227 MTA "S5'" "C5'" sing N N 228 MTA "C5'" "C4'" sing N N 229 MTA "C5'" "H5'1" sing N N 230 MTA "C5'" "H5'2" sing N N 231 MTA "C4'" "O4'" sing N N 232 MTA "C4'" "C3'" sing N N 233 MTA "C4'" "H4'" sing N N 234 MTA "O4'" "C1'" sing N N 235 MTA "C2'" "O2'" sing N N 236 MTA "C2'" "C3'" sing N N 237 MTA "C2'" "C1'" sing N N 238 MTA "C2'" "H2'" sing N N 239 MTA "O2'" "HO2'" sing N N 240 MTA "C3'" "O3'" sing N N 241 MTA "C3'" "H3'" sing N N 242 MTA "O3'" H3T sing N N 243 MTA "C1'" N9 sing N N 244 MTA "C1'" "H1'" sing N N 245 MTA N9 C8 sing Y N 246 MTA N9 C4 sing Y N 247 MTA C8 N7 doub Y N 248 MTA C8 H8 sing N N 249 MTA N7 C5 sing Y N 250 MTA C5 C6 sing Y N 251 MTA C5 C4 doub Y N 252 MTA C6 N6 sing N N 253 MTA C6 N1 doub Y N 254 MTA N6 H61 sing N N 255 MTA N6 H62 sing N N 256 MTA N1 C2 sing Y N 257 MTA C2 N3 doub Y N 258 MTA C2 H2 sing N N 259 MTA N3 C4 sing Y N 260 PHE N CA sing N N 261 PHE N H sing N N 262 PHE N H2 sing N N 263 PHE CA C sing N N 264 PHE CA CB sing N N 265 PHE CA HA sing N N 266 PHE C O doub N N 267 PHE C OXT sing N N 268 PHE CB CG sing N N 269 PHE CB HB2 sing N N 270 PHE CB HB3 sing N N 271 PHE CG CD1 doub Y N 272 PHE CG CD2 sing Y N 273 PHE CD1 CE1 sing Y N 274 PHE CD1 HD1 sing N N 275 PHE CD2 CE2 doub Y N 276 PHE CD2 HD2 sing N N 277 PHE CE1 CZ doub Y N 278 PHE CE1 HE1 sing N N 279 PHE CE2 CZ sing Y N 280 PHE CE2 HE2 sing N N 281 PHE CZ HZ sing N N 282 PHE OXT HXT sing N N 283 PRO N CA sing N N 284 PRO N CD sing N N 285 PRO N H sing N N 286 PRO CA C sing N N 287 PRO CA CB sing N N 288 PRO CA HA sing N N 289 PRO C O doub N N 290 PRO C OXT sing N N 291 PRO CB CG sing N N 292 PRO CB HB2 sing N N 293 PRO CB HB3 sing N N 294 PRO CG CD sing N N 295 PRO CG HG2 sing N N 296 PRO CG HG3 sing N N 297 PRO CD HD2 sing N N 298 PRO CD HD3 sing N N 299 PRO OXT HXT sing N N 300 SAM N CA sing N N 301 SAM N HN1 sing N N 302 SAM N HN2 sing N N 303 SAM CA C sing N N 304 SAM CA CB sing N N 305 SAM CA HA sing N N 306 SAM C O doub N N 307 SAM C OXT sing N N 308 SAM CB CG sing N N 309 SAM CB HB1 sing N N 310 SAM CB HB2 sing N N 311 SAM CG SD sing N N 312 SAM CG HG1 sing N N 313 SAM CG HG2 sing N N 314 SAM SD CE sing N N 315 SAM SD "C5'" sing N N 316 SAM CE HE1 sing N N 317 SAM CE HE2 sing N N 318 SAM CE HE3 sing N N 319 SAM "C5'" "C4'" sing N N 320 SAM "C5'" "H5'1" sing N N 321 SAM "C5'" "H5'2" sing N N 322 SAM "C4'" "O4'" sing N N 323 SAM "C4'" "C3'" sing N N 324 SAM "C4'" "H4'" sing N N 325 SAM "O4'" "C1'" sing N N 326 SAM "C3'" "O3'" sing N N 327 SAM "C3'" "C2'" sing N N 328 SAM "C3'" "H3'" sing N N 329 SAM "O3'" "HO3'" sing N N 330 SAM "C2'" "O2'" sing N N 331 SAM "C2'" "C1'" sing N N 332 SAM "C2'" "H2'" sing N N 333 SAM "O2'" "HO2'" sing N N 334 SAM "C1'" N9 sing N N 335 SAM "C1'" "H1'" sing N N 336 SAM N9 C8 sing Y N 337 SAM N9 C4 sing Y N 338 SAM C8 N7 doub Y N 339 SAM C8 H8 sing N N 340 SAM N7 C5 sing Y N 341 SAM C5 C6 sing Y N 342 SAM C5 C4 doub Y N 343 SAM C6 N6 sing N N 344 SAM C6 N1 doub Y N 345 SAM N6 HN61 sing N N 346 SAM N6 HN62 sing N N 347 SAM N1 C2 sing Y N 348 SAM C2 N3 doub Y N 349 SAM C2 H2 sing N N 350 SAM N3 C4 sing Y N 351 SER N CA sing N N 352 SER N H sing N N 353 SER N H2 sing N N 354 SER CA C sing N N 355 SER CA CB sing N N 356 SER CA HA sing N N 357 SER C O doub N N 358 SER C OXT sing N N 359 SER CB OG sing N N 360 SER CB HB2 sing N N 361 SER CB HB3 sing N N 362 SER OG HG sing N N 363 SER OXT HXT sing N N 364 THR N CA sing N N 365 THR N H sing N N 366 THR N H2 sing N N 367 THR CA C sing N N 368 THR CA CB sing N N 369 THR CA HA sing N N 370 THR C O doub N N 371 THR C OXT sing N N 372 THR CB OG1 sing N N 373 THR CB CG2 sing N N 374 THR CB HB sing N N 375 THR OG1 HG1 sing N N 376 THR CG2 HG21 sing N N 377 THR CG2 HG22 sing N N 378 THR CG2 HG23 sing N N 379 THR OXT HXT sing N N 380 TRP N CA sing N N 381 TRP N H sing N N 382 TRP N H2 sing N N 383 TRP CA C sing N N 384 TRP CA CB sing N N 385 TRP CA HA sing N N 386 TRP C O doub N N 387 TRP C OXT sing N N 388 TRP CB CG sing N N 389 TRP CB HB2 sing N N 390 TRP CB HB3 sing N N 391 TRP CG CD1 doub Y N 392 TRP CG CD2 sing Y N 393 TRP CD1 NE1 sing Y N 394 TRP CD1 HD1 sing N N 395 TRP CD2 CE2 doub Y N 396 TRP CD2 CE3 sing Y N 397 TRP NE1 CE2 sing Y N 398 TRP NE1 HE1 sing N N 399 TRP CE2 CZ2 sing Y N 400 TRP CE3 CZ3 doub Y N 401 TRP CE3 HE3 sing N N 402 TRP CZ2 CH2 doub Y N 403 TRP CZ2 HZ2 sing N N 404 TRP CZ3 CH2 sing Y N 405 TRP CZ3 HZ3 sing N N 406 TRP CH2 HH2 sing N N 407 TRP OXT HXT sing N N 408 TYR N CA sing N N 409 TYR N H sing N N 410 TYR N H2 sing N N 411 TYR CA C sing N N 412 TYR CA CB sing N N 413 TYR CA HA sing N N 414 TYR C O doub N N 415 TYR C OXT sing N N 416 TYR CB CG sing N N 417 TYR CB HB2 sing N N 418 TYR CB HB3 sing N N 419 TYR CG CD1 doub Y N 420 TYR CG CD2 sing Y N 421 TYR CD1 CE1 sing Y N 422 TYR CD1 HD1 sing N N 423 TYR CD2 CE2 doub Y N 424 TYR CD2 HD2 sing N N 425 TYR CE1 CZ doub Y N 426 TYR CE1 HE1 sing N N 427 TYR CE2 CZ sing Y N 428 TYR CE2 HE2 sing N N 429 TYR CZ OH sing N N 430 TYR OH HH sing N N 431 TYR OXT HXT sing N N 432 VAL N CA sing N N 433 VAL N H sing N N 434 VAL N H2 sing N N 435 VAL CA C sing N N 436 VAL CA CB sing N N 437 VAL CA HA sing N N 438 VAL C O doub N N 439 VAL C OXT sing N N 440 VAL CB CG1 sing N N 441 VAL CB CG2 sing N N 442 VAL CB HB sing N N 443 VAL CG1 HG11 sing N N 444 VAL CG1 HG12 sing N N 445 VAL CG1 HG13 sing N N 446 VAL CG2 HG21 sing N N 447 VAL CG2 HG22 sing N N 448 VAL CG2 HG23 sing N N 449 VAL OXT HXT sing N N 450 # _atom_sites.entry_id 2YY8 _atom_sites.fract_transf_matrix[1][1] 0.017809 _atom_sites.fract_transf_matrix[1][2] 0.010282 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.020564 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.008207 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_