HEADER HYDROLASE 02-MAY-07 2YZ3 TITLE CRYSTALLOGRAPHIC INVESTIGATION OF INHIBITION MODE OF THE VIM-2 TITLE 2 METALLO-BETA-LACTAMASE FROM PSEUDOMONAS AERUGINOSA WITH TITLE 3 MERCAPTOCARBOXYLATE INHIBITOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: METALLO-BETA-LACTAMASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: VIM-2, METALLO-BETA-LACTAMASE VIM-2, VIM-2 BETA-LACTAMASE; COMPND 5 EC: 3.5.2.6; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS PUTIDA; SOURCE 3 ORGANISM_TAXID: 303; SOURCE 4 GENE: VIM-2, BLA VIM-2, BLAVIM-2; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PBC, PVM4K/VIM-2 KEYWDS METALLO-BETA-LACTAMASE, ENZYME-INHIBITOR COMPLEX, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR Y.YAMAGUCHI,Y.YAMAGATA,Y.ARAKAWA,H.KUROSAKI REVDAT 3 13-MAR-24 2YZ3 1 REMARK LINK REVDAT 2 24-FEB-09 2YZ3 1 VERSN REVDAT 1 11-MAR-08 2YZ3 0 JRNL AUTH Y.YAMAGUCHI,W.JIN,K.MATSUNAGA,S.IKEMIZU,Y.YAMAGATA, JRNL AUTH 2 J.WACHINO,N.SHIBATA,Y.ARAKAWA,H.KUROSAKI JRNL TITL CRYSTALLOGRAPHIC INVESTIGATION OF THE INHIBITION MODE OF A JRNL TITL 2 VIM-2 METALLO-BETA-LACTAMASE FROM PSEUDOMONAS AERUGINOSA BY JRNL TITL 3 A MERCAPTOCARBOXYLATE INHIBITOR. JRNL REF J.MED.CHEM. V. 50 6647 2007 JRNL REFN ISSN 0022-2623 JRNL PMID 18052313 JRNL DOI 10.1021/JM701031N REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.80 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 1667622.240 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 24102 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.212 REMARK 3 FREE R VALUE : 0.247 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 1166 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.007 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.44 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.30 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 3608 REMARK 3 BIN R VALUE (WORKING SET) : 0.2620 REMARK 3 BIN FREE R VALUE : 0.3010 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.70 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 179 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.022 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3386 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 54 REMARK 3 SOLVENT ATOMS : 212 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 37.70 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 37.90 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -4.02000 REMARK 3 B22 (A**2) : -3.41000 REMARK 3 B33 (A**2) : 7.42000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.28 REMARK 3 ESD FROM SIGMAA (A) : 0.22 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.33 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.26 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.007 REMARK 3 BOND ANGLES (DEGREES) : 2.000 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 25.80 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.540 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.32 REMARK 3 BSOL : 28.47 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : ION.PARAM REMARK 3 PARAMETER FILE 3 : LIGAND.PARAM REMARK 3 PARAMETER FILE 4 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 5 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : ION.TOP REMARK 3 TOPOLOGY FILE 3 : LIGAND.TOP REMARK 3 TOPOLOGY FILE 4 : WATER_REP.TOP REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2YZ3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 10-MAY-07. REMARK 100 THE DEPOSITION ID IS D_1000027315. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL41XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 24156 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : 6.800 REMARK 200 R MERGE (I) : 0.06200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 34.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.38 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.26700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.450 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.22 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.33 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PH 6.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 22.59200 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 64.48850 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 45.37450 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 64.48850 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 22.59200 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 45.37450 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -19 REMARK 465 PHE A -18 REMARK 465 LYS A -17 REMARK 465 LEU A -16 REMARK 465 LEU A -15 REMARK 465 SER A -14 REMARK 465 LYS A -13 REMARK 465 LEU A -12 REMARK 465 LEU A -11 REMARK 465 VAL A -10 REMARK 465 TYR A -9 REMARK 465 LEU A -8 REMARK 465 THR A -7 REMARK 465 ALA A -6 REMARK 465 SER A -5 REMARK 465 ILE A -4 REMARK 465 MET A -3 REMARK 465 ALA A -2 REMARK 465 ILE A -1 REMARK 465 ALA A 0 REMARK 465 SER A 1 REMARK 465 PRO A 2 REMARK 465 LEU A 3 REMARK 465 ALA A 4 REMARK 465 PHE A 5 REMARK 465 SER A 6 REMARK 465 VAL A 7 REMARK 465 ASP A 8 REMARK 465 SER A 9 REMARK 465 SER A 10 REMARK 465 GLY A 11 REMARK 465 LYS A 237 REMARK 465 ALA A 238 REMARK 465 HIS A 239 REMARK 465 THR A 240 REMARK 465 ASN A 241 REMARK 465 ARG A 242 REMARK 465 SER A 243 REMARK 465 VAL A 244 REMARK 465 VAL A 245 REMARK 465 GLU A 246 REMARK 465 MET B -19 REMARK 465 PHE B -18 REMARK 465 LYS B -17 REMARK 465 LEU B -16 REMARK 465 LEU B -15 REMARK 465 SER B -14 REMARK 465 LYS B -13 REMARK 465 LEU B -12 REMARK 465 LEU B -11 REMARK 465 VAL B -10 REMARK 465 TYR B -9 REMARK 465 LEU B -8 REMARK 465 THR B -7 REMARK 465 ALA B -6 REMARK 465 SER B -5 REMARK 465 ILE B -4 REMARK 465 MET B -3 REMARK 465 ALA B -2 REMARK 465 ILE B -1 REMARK 465 ALA B 0 REMARK 465 SER B 1 REMARK 465 PRO B 2 REMARK 465 LEU B 3 REMARK 465 ALA B 4 REMARK 465 PHE B 5 REMARK 465 SER B 6 REMARK 465 VAL B 7 REMARK 465 ASP B 8 REMARK 465 SER B 9 REMARK 465 SER B 10 REMARK 465 GLY B 11 REMARK 465 LYS B 237 REMARK 465 ALA B 238 REMARK 465 HIS B 239 REMARK 465 THR B 240 REMARK 465 ASN B 241 REMARK 465 ARG B 242 REMARK 465 SER B 243 REMARK 465 VAL B 244 REMARK 465 VAL B 245 REMARK 465 GLU B 246 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 64 151.15 73.39 REMARK 500 ALA A 66 31.32 -97.79 REMARK 500 LEU A 138 19.54 -145.73 REMARK 500 ALA A 158 -105.47 -151.51 REMARK 500 LEU A 226 -8.71 -58.98 REMARK 500 ASP B 64 148.89 74.00 REMARK 500 ALA B 66 37.89 -99.97 REMARK 500 ALA B 158 -106.16 -157.21 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 301 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 94 NE2 REMARK 620 2 HIS A 96 ND1 105.2 REMARK 620 3 HIS A 159 NE2 120.4 100.7 REMARK 620 4 M5P A 401 S1 116.3 112.9 100.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 302 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 98 OD1 REMARK 620 2 CYS A 178 SG 114.0 REMARK 620 3 HIS A 220 NE2 95.9 104.2 REMARK 620 4 M5P A 401 S1 100.0 123.7 115.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 303 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 94 NE2 REMARK 620 2 HIS B 96 ND1 104.5 REMARK 620 3 HIS B 159 NE2 109.6 106.8 REMARK 620 4 M5P B 402 S1 125.6 111.9 97.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 304 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 98 OD1 REMARK 620 2 CYS B 178 SG 117.4 REMARK 620 3 HIS B 220 NE2 99.1 104.9 REMARK 620 4 M5P B 402 S1 100.4 115.9 118.5 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE M5P A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE M5P B 402 DBREF 2YZ3 A -19 246 UNP Q7BJM5 Q7BJM5_PSEPU 1 266 DBREF 2YZ3 B -19 246 UNP Q7BJM5 Q7BJM5_PSEPU 1 266 SEQRES 1 A 266 MET PHE LYS LEU LEU SER LYS LEU LEU VAL TYR LEU THR SEQRES 2 A 266 ALA SER ILE MET ALA ILE ALA SER PRO LEU ALA PHE SER SEQRES 3 A 266 VAL ASP SER SER GLY GLU TYR PRO THR VAL SER GLU ILE SEQRES 4 A 266 PRO VAL GLY GLU VAL ARG LEU TYR GLN ILE ALA ASP GLY SEQRES 5 A 266 VAL TRP SER HIS ILE ALA THR GLN SER PHE ASP GLY ALA SEQRES 6 A 266 VAL TYR PRO SER ASN GLY LEU ILE VAL ARG ASP GLY ASP SEQRES 7 A 266 GLU LEU LEU LEU ILE ASP THR ALA TRP GLY ALA LYS ASN SEQRES 8 A 266 THR ALA ALA LEU LEU ALA GLU ILE GLU LYS GLN ILE GLY SEQRES 9 A 266 LEU PRO VAL THR ARG ALA VAL SER THR HIS PHE HIS ASP SEQRES 10 A 266 ASP ARG VAL GLY GLY VAL ASP VAL LEU ARG ALA ALA GLY SEQRES 11 A 266 VAL ALA THR TYR ALA SER PRO SER THR ARG ARG LEU ALA SEQRES 12 A 266 GLU VAL GLU GLY ASN GLU ILE PRO THR HIS SER LEU GLU SEQRES 13 A 266 GLY LEU SER SER SER GLY ASP ALA VAL ARG PHE GLY PRO SEQRES 14 A 266 VAL GLU LEU PHE TYR PRO GLY ALA ALA HIS SER THR ASP SEQRES 15 A 266 ASN LEU VAL VAL TYR VAL PRO SER ALA SER VAL LEU TYR SEQRES 16 A 266 GLY GLY CYS ALA ILE TYR GLU LEU SER ARG THR SER ALA SEQRES 17 A 266 GLY ASN VAL ALA ASP ALA ASP LEU ALA GLU TRP PRO THR SEQRES 18 A 266 SER ILE GLU ARG ILE GLN GLN HIS TYR PRO GLU ALA GLN SEQRES 19 A 266 PHE VAL ILE PRO GLY HIS GLY LEU PRO GLY GLY LEU ASP SEQRES 20 A 266 LEU LEU LYS HIS THR THR ASN VAL VAL LYS ALA HIS THR SEQRES 21 A 266 ASN ARG SER VAL VAL GLU SEQRES 1 B 266 MET PHE LYS LEU LEU SER LYS LEU LEU VAL TYR LEU THR SEQRES 2 B 266 ALA SER ILE MET ALA ILE ALA SER PRO LEU ALA PHE SER SEQRES 3 B 266 VAL ASP SER SER GLY GLU TYR PRO THR VAL SER GLU ILE SEQRES 4 B 266 PRO VAL GLY GLU VAL ARG LEU TYR GLN ILE ALA ASP GLY SEQRES 5 B 266 VAL TRP SER HIS ILE ALA THR GLN SER PHE ASP GLY ALA SEQRES 6 B 266 VAL TYR PRO SER ASN GLY LEU ILE VAL ARG ASP GLY ASP SEQRES 7 B 266 GLU LEU LEU LEU ILE ASP THR ALA TRP GLY ALA LYS ASN SEQRES 8 B 266 THR ALA ALA LEU LEU ALA GLU ILE GLU LYS GLN ILE GLY SEQRES 9 B 266 LEU PRO VAL THR ARG ALA VAL SER THR HIS PHE HIS ASP SEQRES 10 B 266 ASP ARG VAL GLY GLY VAL ASP VAL LEU ARG ALA ALA GLY SEQRES 11 B 266 VAL ALA THR TYR ALA SER PRO SER THR ARG ARG LEU ALA SEQRES 12 B 266 GLU VAL GLU GLY ASN GLU ILE PRO THR HIS SER LEU GLU SEQRES 13 B 266 GLY LEU SER SER SER GLY ASP ALA VAL ARG PHE GLY PRO SEQRES 14 B 266 VAL GLU LEU PHE TYR PRO GLY ALA ALA HIS SER THR ASP SEQRES 15 B 266 ASN LEU VAL VAL TYR VAL PRO SER ALA SER VAL LEU TYR SEQRES 16 B 266 GLY GLY CYS ALA ILE TYR GLU LEU SER ARG THR SER ALA SEQRES 17 B 266 GLY ASN VAL ALA ASP ALA ASP LEU ALA GLU TRP PRO THR SEQRES 18 B 266 SER ILE GLU ARG ILE GLN GLN HIS TYR PRO GLU ALA GLN SEQRES 19 B 266 PHE VAL ILE PRO GLY HIS GLY LEU PRO GLY GLY LEU ASP SEQRES 20 B 266 LEU LEU LYS HIS THR THR ASN VAL VAL LYS ALA HIS THR SEQRES 21 B 266 ASN ARG SER VAL VAL GLU HET ZN A 301 1 HET ZN A 302 1 HET SO4 A 502 5 HET SO4 A 503 5 HET M5P A 401 15 HET ZN B 303 1 HET ZN B 304 1 HET SO4 B 501 5 HET SO4 B 504 5 HET M5P B 402 15 HETNAM ZN ZINC ION HETNAM SO4 SULFATE ION HETNAM M5P (S)-2-(MERCAPTOMETHYL)-5-PHENYLPENTANOIC ACID FORMUL 3 ZN 4(ZN 2+) FORMUL 5 SO4 4(O4 S 2-) FORMUL 7 M5P 2(C12 H16 O2 S) FORMUL 13 HOH *212(H2 O) HELIX 1 1 THR A 15 ILE A 19 5 5 HELIX 2 2 GLY A 68 ILE A 83 1 16 HELIX 3 3 HIS A 96 GLY A 101 1 6 HELIX 4 4 GLY A 102 ALA A 109 1 8 HELIX 5 5 SER A 116 VAL A 125 1 10 HELIX 6 6 PRO A 169 ALA A 171 5 3 HELIX 7 7 CYS A 178 ILE A 180 5 3 HELIX 8 8 GLU A 198 TYR A 210 1 13 HELIX 9 9 LEU A 226 VAL A 236 1 11 HELIX 10 10 THR B 15 ILE B 19 5 5 HELIX 11 11 GLY B 68 ILE B 83 1 16 HELIX 12 12 HIS B 96 GLY B 101 1 6 HELIX 13 13 GLY B 102 ALA B 109 1 8 HELIX 14 14 SER B 116 GLY B 127 1 12 HELIX 15 15 CYS B 178 ILE B 180 5 3 HELIX 16 16 GLU B 198 TYR B 210 1 13 HELIX 17 17 LEU B 226 VAL B 236 1 11 SHEET 1 A 7 VAL A 24 ALA A 30 0 SHEET 2 A 7 VAL A 33 PHE A 42 -1 O VAL A 33 N ILE A 29 SHEET 3 A 7 ALA A 45 ASP A 56 -1 O TYR A 47 N GLN A 40 SHEET 4 A 7 GLU A 59 ILE A 63 -1 O GLU A 59 N ASP A 56 SHEET 5 A 7 VAL A 87 VAL A 91 1 O ARG A 89 N LEU A 62 SHEET 6 A 7 ALA A 112 ALA A 115 1 O TYR A 114 N ALA A 90 SHEET 7 A 7 HIS A 133 SER A 134 1 O HIS A 133 N THR A 113 SHEET 1 B 5 ASP A 143 PHE A 147 0 SHEET 2 B 5 VAL A 150 TYR A 154 -1 O VAL A 150 N PHE A 147 SHEET 3 B 5 VAL A 165 VAL A 168 -1 O TYR A 167 N GLU A 151 SHEET 4 B 5 VAL A 173 GLY A 177 -1 O TYR A 175 N VAL A 166 SHEET 5 B 5 PHE A 215 PRO A 218 1 O PHE A 215 N LEU A 174 SHEET 1 C 7 ARG B 25 ALA B 30 0 SHEET 2 C 7 VAL B 33 PHE B 42 -1 O ILE B 37 N ARG B 25 SHEET 3 C 7 ALA B 45 ASP B 56 -1 O ILE B 53 N TRP B 34 SHEET 4 C 7 GLU B 59 ILE B 63 -1 O ILE B 63 N LEU B 52 SHEET 5 C 7 VAL B 87 VAL B 91 1 O ARG B 89 N LEU B 62 SHEET 6 C 7 ALA B 112 ALA B 115 1 O TYR B 114 N ALA B 90 SHEET 7 C 7 HIS B 133 SER B 134 1 O HIS B 133 N THR B 113 SHEET 1 D 5 ASP B 143 PHE B 147 0 SHEET 2 D 5 VAL B 150 TYR B 154 -1 O LEU B 152 N VAL B 145 SHEET 3 D 5 VAL B 165 VAL B 168 -1 O TYR B 167 N GLU B 151 SHEET 4 D 5 VAL B 173 GLY B 177 -1 O TYR B 175 N VAL B 166 SHEET 5 D 5 PHE B 215 PRO B 218 1 O PHE B 215 N LEU B 174 LINK NE2 HIS A 94 ZN ZN A 301 1555 1555 2.24 LINK ND1 HIS A 96 ZN ZN A 301 1555 1555 1.98 LINK OD1 ASP A 98 ZN ZN A 302 1555 1555 1.94 LINK NE2 HIS A 159 ZN ZN A 301 1555 1555 2.23 LINK SG CYS A 178 ZN ZN A 302 1555 1555 2.20 LINK NE2 HIS A 220 ZN ZN A 302 1555 1555 2.13 LINK ZN ZN A 301 S1 M5P A 401 1555 1555 2.49 LINK ZN ZN A 302 S1 M5P A 401 1555 1555 2.11 LINK NE2 HIS B 94 ZN ZN B 303 1555 1555 2.13 LINK ND1 HIS B 96 ZN ZN B 303 1555 1555 2.16 LINK OD1 ASP B 98 ZN ZN B 304 1555 1555 1.97 LINK NE2 HIS B 159 ZN ZN B 303 1555 1555 2.17 LINK SG CYS B 178 ZN ZN B 304 1555 1555 2.26 LINK NE2 HIS B 220 ZN ZN B 304 1555 1555 2.09 LINK ZN ZN B 303 S1 M5P B 402 1555 1555 2.24 LINK ZN ZN B 304 S1 M5P B 402 1555 1555 2.17 SITE 1 AC1 3 HIS A 94 HIS A 96 HIS A 159 SITE 1 AC2 4 ASP A 98 ARG A 99 CYS A 178 HIS A 220 SITE 1 AC3 3 HIS B 94 HIS B 96 HIS B 159 SITE 1 AC4 4 ASP B 98 ARG B 99 CYS B 178 HIS B 220 SITE 1 AC5 4 SER A 41 HOH A 541 THR B 15 SER B 17 SITE 1 AC6 3 THR A 15 SER A 17 SER B 41 SITE 1 AC7 7 SER A 41 PHE A 42 ASP A 43 HOH A 541 SITE 2 AC7 7 HOH A 564 HOH A 574 HOH A 590 SITE 1 AC8 2 ARG B 89 GLY B 148 SITE 1 AC9 8 PHE A 42 TYR A 47 HIS A 96 ASP A 98 SITE 2 AC9 8 HIS A 159 ARG A 185 ASN A 190 HIS A 220 SITE 1 BC1 10 PHE B 42 TYR B 47 TRP B 67 HIS B 96 SITE 2 BC1 10 ASP B 98 HIS B 159 ARG B 185 ASN B 190 SITE 3 BC1 10 HIS B 220 HOH B 594 CRYST1 45.184 90.749 128.977 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022132 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011019 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007753 0.00000