HEADER SUGAR BINDING PROTEIN 02-MAY-07 2YZ4 TITLE THE NEUTRON STRUCTURE OF CONCANAVALIN A AT 2.2 ANGSTROMS COMPND MOL_ID: 1; COMPND 2 MOLECULE: CONCANAVALIN A; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: CON A SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CANAVALIA ENSIFORMIS; SOURCE 3 ORGANISM_COMMON: JACK BEAN; SOURCE 4 ORGANISM_TAXID: 3823 KEYWDS PROTONATION STATES, SUGAR BINDING PROTEIN EXPDTA NEUTRON DIFFRACTION AUTHOR H.U.AHMED,M.P.BLAKELEY,M.CIANCI,J.A.HUBBARD,J.R.HELLIWELL REVDAT 5 25-OCT-23 2YZ4 1 REMARK LINK REVDAT 4 11-OCT-17 2YZ4 1 SOURCE REMARK ATOM REVDAT 3 13-JUL-11 2YZ4 1 VERSN REVDAT 2 24-FEB-09 2YZ4 1 VERSN REVDAT 1 05-FEB-08 2YZ4 0 JRNL AUTH H.U.AHMED,M.P.BLAKELEY,M.CIANCI,D.W.CRUICKSHANK,J.A.HUBBARD, JRNL AUTH 2 J.R.HELLIWELL JRNL TITL THE DETERMINATION OF PROTONATION STATES IN PROTEINS. JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 63 906 2007 JRNL REFN ISSN 0907-4449 JRNL PMID 17642517 JRNL DOI 10.1107/S0907444907029976 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 33.64 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 2980363.250 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 66.1 REMARK 3 NUMBER OF REFLECTIONS : 8511 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.279 REMARK 3 FREE R VALUE : 0.312 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.600 REMARK 3 FREE R VALUE TEST SET COUNT : 466 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.014 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.34 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 47.30 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 944 REMARK 3 BIN R VALUE (WORKING SET) : 0.3400 REMARK 3 BIN FREE R VALUE : 0.3630 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.30 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 53 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.050 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1809 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 2 REMARK 3 SOLVENT ATOMS : 84 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 22.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.90 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 9.28300 REMARK 3 B22 (A**2) : -13.96800 REMARK 3 B33 (A**2) : 4.68500 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.38 REMARK 3 ESD FROM SIGMAA (A) : 0.45 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.43 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.44 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.015 REMARK 3 BOND ANGLES (DEGREES) : 2.200 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 19.30 REMARK 3 IMPROPER ANGLES (DEGREES) : 10.58 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.340 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.230 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 1.360 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 2.090 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.04 REMARK 3 BSOL : 10.00 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN-H-D-PLANAR.PARAM REMARK 3 PARAMETER FILE 2 : ION.PARAM REMARK 3 PARAMETER FILE 3 : WAT.PARAM REMARK 3 PARAMETER FILE 4 : PROTEIN-H-D-PLANAR.PARAM REMARK 3 PARAMETER FILE 5 : ION.PARAM REMARK 3 PARAMETER FILE 6 : WAT.PARAM REMARK 3 PARAMETER FILE 7 : NULL REMARK 3 TOPOLOGY FILE 1 : ION.TOP REMARK 3 TOPOLOGY FILE 2 : WAT.TOP REMARK 3 TOPOLOGY FILE 3 : PROTEIN-H-D-PLANAR.TOP REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 TOPOLOGY FILE 6 : NULL REMARK 3 TOPOLOGY FILE 7 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2YZ4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 10-MAY-07. REMARK 100 THE DEPOSITION ID IS D_1000027316. REMARK 230 REMARK 230 EXPERIMENTAL DETAILS REMARK 230 EXPERIMENT TYPE : NEUTRON DIFFRACTION REMARK 230 DATE OF DATA COLLECTION : 01-JUN-05 REMARK 230 TEMPERATURE (KELVIN) : 293.0 REMARK 230 PH : 6.50 REMARK 230 NUMBER OF CRYSTALS USED : 1 REMARK 230 REMARK 230 NEUTRON SOURCE : NULL REMARK 230 BEAMLINE : NULL REMARK 230 WAVELENGTH OR RANGE (A) : 2.9-3.9 REMARK 230 MONOCHROMATOR : MULTI MIRROR BANDPASS FILTER REMARK 230 OPTICS : NULL REMARK 230 REMARK 230 DETECTOR TYPE : LADI REMARK 230 DETECTOR MANUFACTURER : IMAGE PLATE REMARK 230 INTENSITY-INTEGRATION SOFTWARE : LAUEGEN, LSCALE REMARK 230 DATA SCALING SOFTWARE : SCALA REMARK 230 REMARK 230 NUMBER OF UNIQUE REFLECTIONS : 8512 REMARK 230 RESOLUTION RANGE HIGH (A) : 2.181 REMARK 230 RESOLUTION RANGE LOW (A) : 33.653 REMARK 230 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 230 REMARK 230 OVERALL. REMARK 230 COMPLETENESS FOR RANGE (%) : 67.2 REMARK 230 DATA REDUNDANCY : 6.200 REMARK 230 R MERGE (I) : 0.21300 REMARK 230 R SYM (I) : 0.21300 REMARK 230 FOR THE DATA SET : 2.8000 REMARK 230 REMARK 230 IN THE HIGHEST RESOLUTION SHELL. REMARK 230 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 230 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.32 REMARK 230 COMPLETENESS FOR SHELL (%) : 46.9 REMARK 230 DATA REDUNDANCY IN SHELL : 4.00 REMARK 230 R MERGE FOR SHELL (I) : 0.31400 REMARK 230 R SYM FOR SHELL (I) : 0.31400 REMARK 230 FOR SHELL : 1.900 REMARK 230 REMARK 230 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 230 SOFTWARE USED : CNS 1.1 REMARK 230 STARTING MODEL: PDB ENTRY 1NLS REMARK 230 REMARK 230 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): NULL REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): NULL REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M NANO3, 0.05M TRIS-ACETATE, 1MM REMARK 280 MNCL2, 1MM CACL2, PH 6.5, BATCH DIALYSIS, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 44.68850 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 43.65700 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 31.52550 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 44.68850 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 43.65700 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 31.52550 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 44.68850 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 43.65700 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 31.52550 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 44.68850 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 43.65700 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 31.52550 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 89.37700 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 87.31400 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -1.000000 0.000000 0.000000 89.37700 REMARK 350 BIOMT2 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 4 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 0.000000 -1.000000 0.000000 87.31400 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 DD22 ASN A 104 DG1 THR A 157 0.99 REMARK 500 C HIS A 127 D PHE A 128 1.32 REMARK 500 DG1 THR A 112 DD1 HIS A 127 1.38 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 VAL A 65 CB VAL A 65 CG1 0.320 REMARK 500 GLU A 102 CD GLU A 102 OE2 0.093 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ILE A 25 N - CA - CB ANGL. DEV. = 19.0 DEGREES REMARK 500 ILE A 25 CA - CB - CG1 ANGL. DEV. = 14.9 DEGREES REMARK 500 ILE A 27 CA - CB - CG1 ANGL. DEV. = 12.8 DEGREES REMARK 500 MET A 42 CG - SD - CE ANGL. DEV. = -11.8 DEGREES REMARK 500 VAL A 65 CG1 - CB - CG2 ANGL. DEV. = -19.6 DEGREES REMARK 500 VAL A 65 CA - CB - CG1 ANGL. DEV. = -13.2 DEGREES REMARK 500 HIS A 121 C - N - CA ANGL. DEV. = 34.5 DEGREES REMARK 500 LYS A 135 CB - CG - CD ANGL. DEV. = 26.8 DEGREES REMARK 500 ASP A 151 CB - CG - OD2 ANGL. DEV. = -5.9 DEGREES REMARK 500 ARG A 158 NE - CZ - NH1 ANGL. DEV. = 4.6 DEGREES REMARK 500 ARG A 158 NE - CZ - NH2 ANGL. DEV. = -3.8 DEGREES REMARK 500 ARG A 172 NH1 - CZ - NH2 ANGL. DEV. = 6.7 DEGREES REMARK 500 ARG A 172 NE - CZ - NH2 ANGL. DEV. = -6.1 DEGREES REMARK 500 VAL A 188 CB - CA - C ANGL. DEV. = 11.7 DEGREES REMARK 500 THR A 196 N - CA - CB ANGL. DEV. = 17.4 DEGREES REMARK 500 ASP A 218 CB - CG - OD2 ANGL. DEV. = -7.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 21 38.21 -82.17 REMARK 500 THR A 120 100.69 -46.61 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 DOD A 578 DISTANCE = 6.41 ANGSTROMS REMARK 525 DOD A 581 DISTANCE = 7.03 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 500 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 8 OE2 REMARK 620 2 ASP A 10 OD2 94.8 REMARK 620 3 ASP A 19 OD1 169.5 95.2 REMARK 620 4 DOD A 506 O 84.0 99.2 91.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 501 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 10 OD1 REMARK 620 2 ASP A 10 OD2 52.7 REMARK 620 3 TYR A 12 O 76.4 112.0 REMARK 620 4 ASN A 14 OD1 151.4 155.9 84.3 REMARK 620 5 ASP A 19 OD2 109.6 78.2 80.8 87.5 REMARK 620 6 DOD A 504 O 106.2 67.9 175.6 94.5 94.9 REMARK 620 7 DOD A 521 O 67.9 112.1 78.4 87.9 159.1 105.8 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 500 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 501 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1C57 RELATED DB: PDB REMARK 900 NEUTRON STRUCTURE OF CONCANAVALIN A AT 293K TO 2.5 ANGSTROMS REMARK 900 RELATED ID: 1XQN RELATED DB: PDB REMARK 900 THE 15K NEUTRON STRUCTURE OF CONCANAVALIN A REMARK 900 RELATED ID: 1NLS RELATED DB: PDB REMARK 900 ULTRA-HIGH RESOLUTION X-RAY STRUCTURE OF CONCANAVALIN A DBREF 2YZ4 A 1 118 UNP P02866 CONA_CANEN 164 281 DBREF 2YZ4 A 119 237 UNP P02866 CONA_CANEN 30 148 SEQRES 1 A 237 ALA ASP THR ILE VAL ALA VAL GLU LEU ASP THR TYR PRO SEQRES 2 A 237 ASN THR ASP ILE GLY ASP PRO SER TYR PRO HIS ILE GLY SEQRES 3 A 237 ILE ASP ILE LYS SER VAL ARG SER LYS LYS THR ALA LYS SEQRES 4 A 237 TRP ASN MET GLN ASN GLY LYS VAL GLY THR ALA HIS ILE SEQRES 5 A 237 ILE TYR ASN SER VAL ASP LYS ARG LEU SER ALA VAL VAL SEQRES 6 A 237 SER TYR PRO ASN ALA ASP SER ALA THR VAL SER TYR ASP SEQRES 7 A 237 VAL ASP LEU ASP ASN VAL LEU PRO GLU TRP VAL ARG VAL SEQRES 8 A 237 GLY LEU SER ALA SER THR GLY LEU TYR LYS GLU THR ASN SEQRES 9 A 237 THR ILE LEU SER TRP SER PHE THR SER LYS LEU LYS SER SEQRES 10 A 237 ASN SER THR HIS GLU THR ASN ALA LEU HIS PHE MET PHE SEQRES 11 A 237 ASN GLN PHE SER LYS ASP GLN LYS ASP LEU ILE LEU GLN SEQRES 12 A 237 GLY ASP ALA THR THR GLY THR ASP GLY ASN LEU GLU LEU SEQRES 13 A 237 THR ARG VAL SER SER ASN GLY SER PRO GLN GLY SER SER SEQRES 14 A 237 VAL GLY ARG ALA LEU PHE TYR ALA PRO VAL HIS ILE TRP SEQRES 15 A 237 GLU SER SER ALA VAL VAL ALA SER PHE GLU ALA THR PHE SEQRES 16 A 237 THR PHE LEU ILE LYS SER PRO ASP SER HIS PRO ALA ASP SEQRES 17 A 237 GLY ILE ALA PHE PHE ILE SER ASN ILE ASP SER SER ILE SEQRES 18 A 237 PRO SER GLY SER THR GLY ARG LEU LEU GLY LEU PHE PRO SEQRES 19 A 237 ASP ALA ASN HET MN A 500 1 HET CA A 501 1 HETNAM MN MANGANESE (II) ION HETNAM CA CALCIUM ION FORMUL 2 MN MN 2+ FORMUL 3 CA CA 2+ FORMUL 4 DOD *84(D2 O) HELIX 1 1 ASN A 14 GLY A 18 5 5 HELIX 2 2 ASP A 80 VAL A 84 5 5 HELIX 3 3 THR A 226 LEU A 230 5 5 SHEET 1 A 7 LYS A 36 LYS A 39 0 SHEET 2 A 7 HIS A 24 ILE A 29 -1 N ILE A 25 O ALA A 38 SHEET 3 A 7 ILE A 4 ASP A 10 -1 N ALA A 6 O ASP A 28 SHEET 4 A 7 GLY A 209 SER A 215 -1 O ILE A 210 N LEU A 9 SHEET 5 A 7 TRP A 88 SER A 96 -1 N SER A 94 O ALA A 211 SHEET 6 A 7 VAL A 170 PHE A 175 -1 O PHE A 175 N VAL A 91 SHEET 7 A 7 LEU A 140 GLY A 144 -1 N ILE A 141 O LEU A 174 SHEET 1 B 6 LYS A 36 LYS A 39 0 SHEET 2 B 6 HIS A 24 ILE A 29 -1 N ILE A 25 O ALA A 38 SHEET 3 B 6 ILE A 4 ASP A 10 -1 N ALA A 6 O ASP A 28 SHEET 4 B 6 GLY A 209 SER A 215 -1 O ILE A 210 N LEU A 9 SHEET 5 B 6 TRP A 88 SER A 96 -1 N SER A 94 O ALA A 211 SHEET 6 B 6 VAL A 179 HIS A 180 -1 O VAL A 179 N VAL A 89 SHEET 1 C 6 ALA A 73 ASP A 78 0 SHEET 2 C 6 ARG A 60 SER A 66 -1 N LEU A 61 O TYR A 77 SHEET 3 C 6 VAL A 47 ASN A 55 -1 N HIS A 51 O VAL A 64 SHEET 4 C 6 ALA A 186 LEU A 198 -1 O ALA A 193 N ILE A 52 SHEET 5 C 6 THR A 105 SER A 117 -1 N LYS A 116 O VAL A 187 SHEET 6 C 6 THR A 123 PHE A 130 -1 O PHE A 130 N TRP A 109 SHEET 1 D 7 ALA A 73 ASP A 78 0 SHEET 2 D 7 ARG A 60 SER A 66 -1 N LEU A 61 O TYR A 77 SHEET 3 D 7 VAL A 47 ASN A 55 -1 N HIS A 51 O VAL A 64 SHEET 4 D 7 ALA A 186 LEU A 198 -1 O ALA A 193 N ILE A 52 SHEET 5 D 7 THR A 105 SER A 117 -1 N LYS A 116 O VAL A 187 SHEET 6 D 7 LEU A 154 GLU A 155 -1 O LEU A 154 N ILE A 106 SHEET 7 D 7 THR A 147 THR A 148 -1 N THR A 147 O GLU A 155 LINK OE2 GLU A 8 MN MN A 500 1555 1555 2.17 LINK OD2 ASP A 10 MN MN A 500 1555 1555 2.15 LINK OD1 ASP A 10 CA CA A 501 1555 1555 2.47 LINK OD2 ASP A 10 CA CA A 501 1555 1555 2.51 LINK O TYR A 12 CA CA A 501 1555 1555 2.38 LINK OD1 ASN A 14 CA CA A 501 1555 1555 2.35 LINK OD1 ASP A 19 MN MN A 500 1555 1555 2.19 LINK OD2 ASP A 19 CA CA A 501 1555 1555 2.41 LINK MN MN A 500 O DOD A 506 1555 1555 2.30 LINK CA CA A 501 O DOD A 504 1555 1555 2.95 LINK CA CA A 501 O DOD A 521 1555 1555 2.93 CISPEP 1 THR A 120 HIS A 121 0 -6.65 CISPEP 2 HIS A 121 GLU A 122 0 8.21 CISPEP 3 ALA A 207 ASP A 208 0 0.93 SITE 1 AC1 4 GLU A 8 ASP A 10 ASP A 19 HIS A 24 SITE 1 AC2 4 ASP A 10 TYR A 12 ASN A 14 ASP A 19 CRYST1 89.377 87.314 63.051 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011189 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011453 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015860 0.00000