HEADER LYASE 06-MAY-07 2YZR TITLE CRYSTAL STRUCTURE OF PYRIDOXINE BIOSYNTHESIS PROTEIN FROM TITLE 2 METHANOCALDOCOCCUS JANNASCHII COMPND MOL_ID: 1; COMPND 2 MOLECULE: PYRIDOXAL BIOSYNTHESIS LYASE PDXS; COMPND 3 CHAIN: A, B, C; COMPND 4 SYNONYM: PYRIDOXINE BIOSYNTHESIS PROTEIN; COMPND 5 EC: 4.-.-.-; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: METHANOCALDOCOCCUS JANNASCHII; SOURCE 3 ORGANISM_TAXID: 243232; SOURCE 4 STRAIN: DSM 2661; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: ROSETTA(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET-21A KEYWDS REDOX PROTEIN, LYASE, PYRIDOXAL PHOSPHATE, STRUCTURAL GENOMICS, KEYWDS 2 NPPSFA, NATIONAL PROJECT ON PROTEIN STRUCTURAL AND FUNCTIONAL KEYWDS 3 ANALYSES, RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE, RSGI EXPDTA X-RAY DIFFRACTION AUTHOR M.MANZOKU,A.EBIHARA,S.YOKOYAMA,S.KURAMITSU,RIKEN STRUCTURAL AUTHOR 2 GENOMICS/PROTEOMICS INITIATIVE (RSGI) REVDAT 5 25-OCT-23 2YZR 1 REMARK REVDAT 4 13-JUL-11 2YZR 1 VERSN REVDAT 3 24-FEB-09 2YZR 1 VERSN REVDAT 2 13-NOV-07 2YZR 1 JRNL REVDAT 1 06-NOV-07 2YZR 0 JRNL AUTH M.MANZOKU,A.EBIHARA,L.CHEN,Z.-Q.FU,J.CHRZAS,B.-C.WANG, JRNL AUTH 2 S.YOKOYAMA,S.KURAMITSU JRNL TITL CRYSTAL STRUCTURE OF PYRIDOXINE BIOSYNTHESIS PROTEIN FROM JRNL TITL 2 METHANOCALDOCOCCUS JANNASCHII JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.30 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 3898537.760 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 97.7 REMARK 3 NUMBER OF REFLECTIONS : 68032 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.197 REMARK 3 FREE R VALUE : 0.225 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.100 REMARK 3 FREE R VALUE TEST SET COUNT : 6883 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.003 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.44 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 94.10 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 9760 REMARK 3 BIN R VALUE (WORKING SET) : 0.2090 REMARK 3 BIN FREE R VALUE : 0.2460 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 10.40 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 1129 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.007 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6839 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 9 REMARK 3 SOLVENT ATOMS : 318 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 30.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.60 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.46000 REMARK 3 B22 (A**2) : -0.63000 REMARK 3 B33 (A**2) : 1.09000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.24 REMARK 3 ESD FROM SIGMAA (A) : 0.14 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.28 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.18 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.005 REMARK 3 BOND ANGLES (DEGREES) : 1.200 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 21.30 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.750 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.330 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.130 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 2.470 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 3.630 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.38 REMARK 3 BSOL : 24.50 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : WATER.TOP REMARK 3 TOPOLOGY FILE 3 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2YZR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 30-JUL-07. REMARK 100 THE DEPOSITION ID IS D_1000027339. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 31-JAN-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-BM REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9790 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 68092 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.1 REMARK 200 DATA REDUNDANCY : 11.20 REMARK 200 R MERGE (I) : 0.08100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 29.0400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.38 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : 11.40 REMARK 200 R MERGE FOR SHELL (I) : 0.23500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 8.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 1ZNN REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 66.25 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.64 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M SODIUM ACETATE PH 4.6, 3.5M REMARK 280 AMMONIUM CHLORIDE, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 53.02700 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 85.39850 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 86.66700 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 53.02700 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 85.39850 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 86.66700 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 53.02700 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 85.39850 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 86.66700 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 53.02700 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 85.39850 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 86.66700 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DODECAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DODECAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 46790 ANGSTROM**2 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -106.05400 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 -170.79700 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -1.000000 0.000000 0.000000 -106.05400 REMARK 350 BIOMT2 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 4 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 0.000000 -1.000000 0.000000 -170.79700 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 LYS A 2 REMARK 465 LYS A 3 REMARK 465 GLY A 4 REMARK 465 ALA A 53 REMARK 465 ALA A 54 REMARK 465 ILE A 314 REMARK 465 ASP A 315 REMARK 465 ILE A 316 REMARK 465 THR A 317 REMARK 465 GLN A 318 REMARK 465 ILE A 319 REMARK 465 SER A 320 REMARK 465 GLU A 321 REMARK 465 ALA A 322 REMARK 465 GLU A 323 REMARK 465 LYS A 324 REMARK 465 MET A 325 REMARK 465 GLN A 326 REMARK 465 TYR A 327 REMARK 465 ARG A 328 REMARK 465 GLY A 329 REMARK 465 ASP A 330 REMARK 465 MET B 1 REMARK 465 LYS B 2 REMARK 465 LYS B 3 REMARK 465 GLY B 4 REMARK 465 THR B 5 REMARK 465 ASP B 6 REMARK 465 LEU B 7 REMARK 465 LEU B 8 REMARK 465 LYS B 9 REMARK 465 LYS B 10 REMARK 465 GLY B 11 REMARK 465 PHE B 12 REMARK 465 ALA B 13 REMARK 465 LYS B 14 REMARK 465 ILE B 314 REMARK 465 ASP B 315 REMARK 465 ILE B 316 REMARK 465 THR B 317 REMARK 465 GLN B 318 REMARK 465 ILE B 319 REMARK 465 SER B 320 REMARK 465 GLU B 321 REMARK 465 ALA B 322 REMARK 465 GLU B 323 REMARK 465 LYS B 324 REMARK 465 MET B 325 REMARK 465 GLN B 326 REMARK 465 TYR B 327 REMARK 465 ARG B 328 REMARK 465 GLY B 329 REMARK 465 ASP B 330 REMARK 465 MET C 1 REMARK 465 LYS C 2 REMARK 465 LYS C 3 REMARK 465 GLY C 4 REMARK 465 THR C 5 REMARK 465 ASP C 6 REMARK 465 LEU C 7 REMARK 465 LEU C 8 REMARK 465 LYS C 9 REMARK 465 LYS C 10 REMARK 465 GLY C 11 REMARK 465 PHE C 12 REMARK 465 ALA C 13 REMARK 465 LYS C 14 REMARK 465 ALA C 53 REMARK 465 ILE C 314 REMARK 465 ASP C 315 REMARK 465 ILE C 316 REMARK 465 THR C 317 REMARK 465 GLN C 318 REMARK 465 ILE C 319 REMARK 465 SER C 320 REMARK 465 GLU C 321 REMARK 465 ALA C 322 REMARK 465 GLU C 323 REMARK 465 LYS C 324 REMARK 465 MET C 325 REMARK 465 GLN C 326 REMARK 465 TYR C 327 REMARK 465 ARG C 328 REMARK 465 GLY C 329 REMARK 465 ASP C 330 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 THR A 5 OG1 CG2 REMARK 470 MET B 15 CG SD CE REMARK 470 VAL B 47 CG1 CG2 REMARK 470 MET C 15 CG SD CE REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 6 -65.96 68.20 REMARK 500 HIS A 18 -7.99 81.93 REMARK 500 ALA A 310 -167.53 -106.76 REMARK 500 LYS B 312 -77.15 -65.94 REMARK 500 GLU C 150 106.68 175.02 REMARK 500 ILE C 274 -61.36 -93.67 REMARK 500 ASN C 293 47.10 -109.65 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL C 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 506 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 507 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL C 508 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 509 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: MJA001000677.1 RELATED DB: TARGETDB DBREF 2YZR A 1 330 UNP Q58090 PDXS_METJA 1 330 DBREF 2YZR B 1 330 UNP Q58090 PDXS_METJA 1 330 DBREF 2YZR C 1 330 UNP Q58090 PDXS_METJA 1 330 SEQRES 1 A 330 MET LYS LYS GLY THR ASP LEU LEU LYS LYS GLY PHE ALA SEQRES 2 A 330 LYS MET VAL LYS HIS GLY VAL VAL MET ASP VAL THR ASN SEQRES 3 A 330 VAL GLU GLN ALA GLN ILE ALA GLU GLU ALA GLY ALA VAL SEQRES 4 A 330 ALA VAL MET ALA LEU GLU ARG VAL PRO ALA ASP ILE ARG SEQRES 5 A 330 ALA ALA GLY GLY VAL ALA ARG MET SER ASP PRO ALA LEU SEQRES 6 A 330 ILE GLU GLU ILE MET ASP ALA VAL SER ILE PRO VAL MET SEQRES 7 A 330 ALA LYS CYS ARG ILE GLY HIS THR THR GLU ALA LEU VAL SEQRES 8 A 330 LEU GLU ALA ILE GLY VAL ASP MET ILE ASP GLU SER GLU SEQRES 9 A 330 VAL LEU THR GLN ALA ASP PRO PHE PHE HIS ILE TYR LYS SEQRES 10 A 330 LYS LYS PHE ASN VAL PRO PHE VAL CYS GLY ALA ARG ASN SEQRES 11 A 330 LEU GLY GLU ALA VAL ARG ARG ILE TRP GLU GLY ALA ALA SEQRES 12 A 330 MET ILE ARG THR LYS GLY GLU ALA GLY THR GLY ASN ILE SEQRES 13 A 330 VAL GLU ALA VAL ARG HIS MET ARG LEU MET ASN GLU ALA SEQRES 14 A 330 ILE ALA GLN LEU GLN ARG MET THR ASP GLU GLU VAL TYR SEQRES 15 A 330 GLY VAL ALA LYS PHE TYR ALA ASN ARG TYR ALA GLU LEU SEQRES 16 A 330 ALA LYS THR VAL ARG GLU GLY MET GLY LEU PRO ALA THR SEQRES 17 A 330 VAL LEU GLU ASN GLU PRO ILE TYR GLU GLY PHE THR LEU SEQRES 18 A 330 ALA GLU ILE ILE ASP GLY LEU TYR GLU VAL LEU LEU GLU SEQRES 19 A 330 VAL LYS LYS LEU GLY ARG LEU PRO VAL VAL ASN PHE ALA SEQRES 20 A 330 ALA GLY GLY VAL ALA THR PRO ALA ASP ALA ALA LEU MET SEQRES 21 A 330 MET GLN LEU GLY SER ASP GLY VAL PHE VAL GLY SER GLY SEQRES 22 A 330 ILE PHE LYS SER GLU ASN PRO LEU GLU ARG ALA ARG ALA SEQRES 23 A 330 ILE VAL GLU ALA THR TYR ASN TYR ASP LYS PRO ASP ILE SEQRES 24 A 330 VAL ALA GLU VAL SER LYS ASN LEU GLY GLU ALA MET LYS SEQRES 25 A 330 GLY ILE ASP ILE THR GLN ILE SER GLU ALA GLU LYS MET SEQRES 26 A 330 GLN TYR ARG GLY ASP SEQRES 1 B 330 MET LYS LYS GLY THR ASP LEU LEU LYS LYS GLY PHE ALA SEQRES 2 B 330 LYS MET VAL LYS HIS GLY VAL VAL MET ASP VAL THR ASN SEQRES 3 B 330 VAL GLU GLN ALA GLN ILE ALA GLU GLU ALA GLY ALA VAL SEQRES 4 B 330 ALA VAL MET ALA LEU GLU ARG VAL PRO ALA ASP ILE ARG SEQRES 5 B 330 ALA ALA GLY GLY VAL ALA ARG MET SER ASP PRO ALA LEU SEQRES 6 B 330 ILE GLU GLU ILE MET ASP ALA VAL SER ILE PRO VAL MET SEQRES 7 B 330 ALA LYS CYS ARG ILE GLY HIS THR THR GLU ALA LEU VAL SEQRES 8 B 330 LEU GLU ALA ILE GLY VAL ASP MET ILE ASP GLU SER GLU SEQRES 9 B 330 VAL LEU THR GLN ALA ASP PRO PHE PHE HIS ILE TYR LYS SEQRES 10 B 330 LYS LYS PHE ASN VAL PRO PHE VAL CYS GLY ALA ARG ASN SEQRES 11 B 330 LEU GLY GLU ALA VAL ARG ARG ILE TRP GLU GLY ALA ALA SEQRES 12 B 330 MET ILE ARG THR LYS GLY GLU ALA GLY THR GLY ASN ILE SEQRES 13 B 330 VAL GLU ALA VAL ARG HIS MET ARG LEU MET ASN GLU ALA SEQRES 14 B 330 ILE ALA GLN LEU GLN ARG MET THR ASP GLU GLU VAL TYR SEQRES 15 B 330 GLY VAL ALA LYS PHE TYR ALA ASN ARG TYR ALA GLU LEU SEQRES 16 B 330 ALA LYS THR VAL ARG GLU GLY MET GLY LEU PRO ALA THR SEQRES 17 B 330 VAL LEU GLU ASN GLU PRO ILE TYR GLU GLY PHE THR LEU SEQRES 18 B 330 ALA GLU ILE ILE ASP GLY LEU TYR GLU VAL LEU LEU GLU SEQRES 19 B 330 VAL LYS LYS LEU GLY ARG LEU PRO VAL VAL ASN PHE ALA SEQRES 20 B 330 ALA GLY GLY VAL ALA THR PRO ALA ASP ALA ALA LEU MET SEQRES 21 B 330 MET GLN LEU GLY SER ASP GLY VAL PHE VAL GLY SER GLY SEQRES 22 B 330 ILE PHE LYS SER GLU ASN PRO LEU GLU ARG ALA ARG ALA SEQRES 23 B 330 ILE VAL GLU ALA THR TYR ASN TYR ASP LYS PRO ASP ILE SEQRES 24 B 330 VAL ALA GLU VAL SER LYS ASN LEU GLY GLU ALA MET LYS SEQRES 25 B 330 GLY ILE ASP ILE THR GLN ILE SER GLU ALA GLU LYS MET SEQRES 26 B 330 GLN TYR ARG GLY ASP SEQRES 1 C 330 MET LYS LYS GLY THR ASP LEU LEU LYS LYS GLY PHE ALA SEQRES 2 C 330 LYS MET VAL LYS HIS GLY VAL VAL MET ASP VAL THR ASN SEQRES 3 C 330 VAL GLU GLN ALA GLN ILE ALA GLU GLU ALA GLY ALA VAL SEQRES 4 C 330 ALA VAL MET ALA LEU GLU ARG VAL PRO ALA ASP ILE ARG SEQRES 5 C 330 ALA ALA GLY GLY VAL ALA ARG MET SER ASP PRO ALA LEU SEQRES 6 C 330 ILE GLU GLU ILE MET ASP ALA VAL SER ILE PRO VAL MET SEQRES 7 C 330 ALA LYS CYS ARG ILE GLY HIS THR THR GLU ALA LEU VAL SEQRES 8 C 330 LEU GLU ALA ILE GLY VAL ASP MET ILE ASP GLU SER GLU SEQRES 9 C 330 VAL LEU THR GLN ALA ASP PRO PHE PHE HIS ILE TYR LYS SEQRES 10 C 330 LYS LYS PHE ASN VAL PRO PHE VAL CYS GLY ALA ARG ASN SEQRES 11 C 330 LEU GLY GLU ALA VAL ARG ARG ILE TRP GLU GLY ALA ALA SEQRES 12 C 330 MET ILE ARG THR LYS GLY GLU ALA GLY THR GLY ASN ILE SEQRES 13 C 330 VAL GLU ALA VAL ARG HIS MET ARG LEU MET ASN GLU ALA SEQRES 14 C 330 ILE ALA GLN LEU GLN ARG MET THR ASP GLU GLU VAL TYR SEQRES 15 C 330 GLY VAL ALA LYS PHE TYR ALA ASN ARG TYR ALA GLU LEU SEQRES 16 C 330 ALA LYS THR VAL ARG GLU GLY MET GLY LEU PRO ALA THR SEQRES 17 C 330 VAL LEU GLU ASN GLU PRO ILE TYR GLU GLY PHE THR LEU SEQRES 18 C 330 ALA GLU ILE ILE ASP GLY LEU TYR GLU VAL LEU LEU GLU SEQRES 19 C 330 VAL LYS LYS LEU GLY ARG LEU PRO VAL VAL ASN PHE ALA SEQRES 20 C 330 ALA GLY GLY VAL ALA THR PRO ALA ASP ALA ALA LEU MET SEQRES 21 C 330 MET GLN LEU GLY SER ASP GLY VAL PHE VAL GLY SER GLY SEQRES 22 C 330 ILE PHE LYS SER GLU ASN PRO LEU GLU ARG ALA ARG ALA SEQRES 23 C 330 ILE VAL GLU ALA THR TYR ASN TYR ASP LYS PRO ASP ILE SEQRES 24 C 330 VAL ALA GLU VAL SER LYS ASN LEU GLY GLU ALA MET LYS SEQRES 25 C 330 GLY ILE ASP ILE THR GLN ILE SER GLU ALA GLU LYS MET SEQRES 26 C 330 GLN TYR ARG GLY ASP HET CL A 501 1 HET CL A 502 1 HET CL A 506 1 HET CL A 507 1 HET CL B 503 1 HET CL B 505 1 HET CL B 509 1 HET CL C 504 1 HET CL C 508 1 HETNAM CL CHLORIDE ION FORMUL 4 CL 9(CL 1-) FORMUL 13 HOH *318(H2 O) HELIX 1 1 ASP A 6 MET A 15 1 10 HELIX 2 2 ASN A 26 GLY A 37 1 12 HELIX 3 3 VAL A 47 ARG A 52 1 6 HELIX 4 4 ASP A 62 VAL A 73 1 12 HELIX 5 5 HIS A 85 ILE A 95 1 11 HELIX 6 6 TYR A 116 PHE A 120 5 5 HELIX 7 7 ASN A 130 GLY A 141 1 12 HELIX 8 8 ILE A 156 GLN A 174 1 19 HELIX 9 9 THR A 177 ASN A 190 1 14 HELIX 10 10 ALA A 193 MET A 203 1 11 HELIX 11 11 LEU A 221 GLY A 239 1 19 HELIX 12 12 THR A 253 LEU A 263 1 11 HELIX 13 13 GLY A 271 LYS A 276 1 6 HELIX 14 14 ASN A 279 ASN A 293 1 15 HELIX 15 15 LYS A 296 LYS A 305 1 10 HELIX 16 16 ASN B 26 GLY B 37 1 12 HELIX 17 17 VAL B 47 GLY B 55 1 9 HELIX 18 18 ASP B 62 VAL B 73 1 12 HELIX 19 19 HIS B 85 ILE B 95 1 11 HELIX 20 20 TYR B 116 PHE B 120 5 5 HELIX 21 21 ASN B 130 GLU B 140 1 11 HELIX 22 22 ILE B 156 GLN B 174 1 19 HELIX 23 23 THR B 177 ASN B 190 1 14 HELIX 24 24 ALA B 193 MET B 203 1 11 HELIX 25 25 LEU B 221 GLY B 239 1 19 HELIX 26 26 THR B 253 LEU B 263 1 11 HELIX 27 27 GLY B 271 LYS B 276 1 6 HELIX 28 28 ASN B 279 ASN B 293 1 15 HELIX 29 29 LYS B 296 LYS B 305 1 10 HELIX 30 30 ASN C 26 GLY C 37 1 12 HELIX 31 31 VAL C 47 ARG C 52 1 6 HELIX 32 32 ASP C 62 VAL C 73 1 12 HELIX 33 33 HIS C 85 ILE C 95 1 11 HELIX 34 34 TYR C 116 PHE C 120 5 5 HELIX 35 35 ASN C 130 GLY C 141 1 12 HELIX 36 36 ILE C 156 GLN C 174 1 19 HELIX 37 37 THR C 177 ASN C 190 1 14 HELIX 38 38 ALA C 193 MET C 203 1 11 HELIX 39 39 LEU C 221 GLY C 239 1 19 HELIX 40 40 THR C 253 LEU C 263 1 11 HELIX 41 41 GLY C 271 LYS C 276 1 6 HELIX 42 42 ASN C 279 ASN C 293 1 15 HELIX 43 43 LYS C 296 LYS C 305 1 10 SHEET 1 A 9 VAL A 20 VAL A 24 0 SHEET 2 A 9 ALA A 40 ALA A 43 1 O MET A 42 N MET A 22 SHEET 3 A 9 VAL A 77 ARG A 82 1 O MET A 78 N VAL A 41 SHEET 4 A 9 MET A 99 SER A 103 1 O ASP A 101 N ALA A 79 SHEET 5 A 9 PHE A 124 GLY A 127 1 O VAL A 125 N ILE A 100 SHEET 6 A 9 MET A 144 THR A 147 1 O ARG A 146 N CYS A 126 SHEET 7 A 9 VAL A 244 ALA A 247 1 O VAL A 244 N ILE A 145 SHEET 8 A 9 VAL A 268 VAL A 270 1 O PHE A 269 N ALA A 247 SHEET 9 A 9 VAL A 20 VAL A 24 1 N VAL A 21 O VAL A 270 SHEET 1 B 2 PRO A 214 TYR A 216 0 SHEET 2 B 2 PHE A 219 THR A 220 -1 O PHE A 219 N ILE A 215 SHEET 1 C 9 VAL B 20 VAL B 24 0 SHEET 2 C 9 ALA B 40 ALA B 43 1 O MET B 42 N MET B 22 SHEET 3 C 9 VAL B 77 ARG B 82 1 O MET B 78 N ALA B 43 SHEET 4 C 9 MET B 99 SER B 103 1 O ASP B 101 N ALA B 79 SHEET 5 C 9 PHE B 124 ALA B 128 1 O VAL B 125 N ILE B 100 SHEET 6 C 9 MET B 144 LYS B 148 1 O ARG B 146 N CYS B 126 SHEET 7 C 9 VAL B 244 ALA B 248 1 O VAL B 244 N ILE B 145 SHEET 8 C 9 GLY B 267 VAL B 270 1 O GLY B 267 N ALA B 247 SHEET 9 C 9 VAL B 20 VAL B 24 1 N VAL B 21 O VAL B 270 SHEET 1 D 2 PRO B 214 TYR B 216 0 SHEET 2 D 2 PHE B 219 THR B 220 -1 O PHE B 219 N TYR B 216 SHEET 1 E 9 GLY C 19 VAL C 24 0 SHEET 2 E 9 ALA C 40 ALA C 43 1 O MET C 42 N MET C 22 SHEET 3 E 9 VAL C 77 ARG C 82 1 O MET C 78 N ALA C 43 SHEET 4 E 9 MET C 99 SER C 103 1 O ASP C 101 N ALA C 79 SHEET 5 E 9 PHE C 124 ALA C 128 1 O VAL C 125 N ILE C 100 SHEET 6 E 9 MET C 144 LYS C 148 1 O ARG C 146 N CYS C 126 SHEET 7 E 9 VAL C 244 ALA C 248 1 O VAL C 244 N ILE C 145 SHEET 8 E 9 GLY C 267 VAL C 270 1 O GLY C 267 N ALA C 247 SHEET 9 E 9 GLY C 19 VAL C 24 1 N VAL C 21 O VAL C 270 SHEET 1 F 2 PRO C 214 TYR C 216 0 SHEET 2 F 2 PHE C 219 THR C 220 -1 O PHE C 219 N ILE C 215 SITE 1 AC1 2 GLU A 211 LYS C 186 SITE 1 AC2 4 LYS A 186 HOH A 529 LEU C 210 GLU C 211 SITE 1 AC3 2 ARG B 136 ARG B 137 SITE 1 AC4 2 ARG C 136 ARG C 137 SITE 1 AC5 2 LYS B 186 GLU B 211 SITE 1 AC6 2 ARG A 136 ARG A 137 SITE 1 AC7 2 LEU A 241 ASN A 245 SITE 1 AC8 3 ARG C 240 LEU C 241 ASN C 245 SITE 1 AC9 2 LEU B 241 ASN B 245 CRYST1 106.054 170.797 173.334 90.00 90.00 90.00 I 2 2 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009429 0.000000 0.000000 0.00000 SCALE2 0.000000 0.005855 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005769 0.00000