HEADER HYDROLASE/STRUCTURAL PROTEIN 07-MAY-07 2Z0D TITLE THE CRYSTAL STRUCTURE OF HUMAN ATG4B- LC3(1-120) COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYSTEINE PROTEASE ATG4B; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES (-2)-354; COMPND 5 SYNONYM: HSATG4B, AUTOPHAGY-RELATED PROTEIN 4 HOMOLOG B, HAPG4B, COMPND 6 AUTOPHAGIN-1, AUTOPHAGY-RELATED CYSTEINE ENDOPEPTIDASE 1, AUT-LIKE 1 COMPND 7 CYSTEINE ENDOPEPTIDASE; COMPND 8 EC: 3.4.22.-; COMPND 9 ENGINEERED: YES; COMPND 10 MUTATION: YES; COMPND 11 MOL_ID: 2; COMPND 12 MOLECULE: MICROTUBULE-ASSOCIATED PROTEINS 1A/1B LIGHT CHAIN 3B; COMPND 13 CHAIN: B; COMPND 14 SYNONYM: LC3, MICROTUBULE-ASSOCIATED PROTEIN 1 LIGHT CHAIN 3 BETA, COMPND 15 MAP1A/MAP1B LC3 B, MAP1A/1B LIGHT CHAIN 3 B, MAP1 LIGHT CHAIN 3-LIKE COMPND 16 PROTEIN 2, AUTOPHAGY-RELATED PROTEIN LC3 B, AUTOPHAGY-RELATED COMPND 17 UBIQUITIN-LIKE MODIFIER LC3 B; COMPND 18 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PGEX6P; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; SOURCE 12 ORGANISM_COMMON: NORWAY RAT; SOURCE 13 ORGANISM_TAXID: 10116; SOURCE 14 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 16 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 17 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 18 EXPRESSION_SYSTEM_PLASMID: PGEX6P KEYWDS PAPAIN-LIKE FOLD, UBIQUITIN FOLD, HYDROLASE-STRUCTURAL PROTEIN KEYWDS 2 COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR K.SATOO,N.N.NODA,F.INAGAKI REVDAT 5 01-NOV-23 2Z0D 1 REMARK REVDAT 4 10-NOV-21 2Z0D 1 SEQADV REVDAT 3 06-OCT-09 2Z0D 1 JRNL REVDAT 2 24-FEB-09 2Z0D 1 VERSN REVDAT 1 22-MAY-07 2Z0D 0 JRNL AUTH K.SATOO,N.N.NODA,H.KUMETA,Y.FUJIOKA,N.MIZUSHIMA,Y.OHSUMI, JRNL AUTH 2 F.INAGAKI JRNL TITL THE STRUCTURE OF ATG4B-LC3 COMPLEX REVEALS THE MECHANISM OF JRNL TITL 2 LC3 PROCESSING AND DELIPIDATION DURING AUTOPHAGY. JRNL REF EMBO J. V. 28 1341 2009 JRNL REFN ISSN 0261-4189 JRNL PMID 19322194 JRNL DOI 10.1038/EMBOJ.2009.80 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 34.84 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 208436.610 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 92.6 REMARK 3 NUMBER OF REFLECTIONS : 33509 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.192 REMARK 3 FREE R VALUE : 0.227 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3341 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.004 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.02 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 85.20 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 4567 REMARK 3 BIN R VALUE (WORKING SET) : 0.2350 REMARK 3 BIN FREE R VALUE : 0.2710 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 9.60 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 486 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.012 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3363 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 314 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 16.90 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.80 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.67000 REMARK 3 B22 (A**2) : 5.41000 REMARK 3 B33 (A**2) : -6.08000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.21 REMARK 3 ESD FROM SIGMAA (A) : 0.16 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.25 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.18 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.005 REMARK 3 BOND ANGLES (DEGREES) : 1.300 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 23.20 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.780 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.36 REMARK 3 BSOL : 44.87 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : WATER.TOP REMARK 3 TOPOLOGY FILE 3 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2Z0D COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 08-MAY-07. REMARK 100 THE DEPOSITION ID IS D_1000027361. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 90 REMARK 200 PH : 5.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : BL-5A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 34586 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.6 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.05600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.97 REMARK 200 COMPLETENESS FOR SHELL (%) : 92.5 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.33000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 2CY7, 1UGM REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.80 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.04 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG 3350, 0.1M SODIUM CITRATE, PH REMARK 280 5.8, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 23.73750 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 51.29700 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 45.90600 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 51.29700 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 23.73750 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 45.90600 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY IS A HETERO-DIMER OF MOLECULES A REMARK 300 AND B. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2410 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18360 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -6.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -2 REMARK 465 PRO A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 ASP A 2 REMARK 465 ALA A 3 REMARK 465 ALA A 4 REMARK 465 VAL A 187 REMARK 465 PRO A 188 REMARK 465 CYS A 189 REMARK 465 ALA A 190 REMARK 465 GLY A 191 REMARK 465 ALA A 192 REMARK 465 THR A 193 REMARK 465 ALA A 194 REMARK 465 PHE A 195 REMARK 465 PRO A 196 REMARK 465 ALA A 197 REMARK 465 ASP A 198 REMARK 465 SER A 199 REMARK 465 ASP A 200 REMARK 465 ARG A 201 REMARK 465 HIS A 202 REMARK 465 CYS A 203 REMARK 465 ASN A 204 REMARK 465 GLY A 205 REMARK 465 PHE A 206 REMARK 465 PRO A 207 REMARK 465 ALA A 208 REMARK 465 GLY A 209 REMARK 465 ALA A 210 REMARK 465 GLU A 211 REMARK 465 VAL A 212 REMARK 465 THR A 213 REMARK 465 ASN A 214 REMARK 465 ARG A 215 REMARK 465 PRO A 216 REMARK 465 SER A 217 REMARK 465 THR A 289 REMARK 465 ASP A 290 REMARK 465 GLY A 291 REMARK 465 CYS A 292 REMARK 465 PHE A 293 REMARK 465 SER A 340 REMARK 465 LEU A 341 REMARK 465 LEU A 342 REMARK 465 GLY A 343 REMARK 465 GLY A 344 REMARK 465 GLY B -4 REMARK 465 PRO B -3 REMARK 465 LEU B -2 REMARK 465 GLY B -1 REMARK 465 SER B 0 REMARK 465 MET B 1 REMARK 465 PRO B 2 REMARK 465 SER B 3 REMARK 465 GLU B 4 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 THR A 5 OG1 CG2 REMARK 470 ARG A 12 CG CD NE CZ NH1 NH2 REMARK 470 PHE A 13 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLU A 17 CG CD OE1 OE2 REMARK 470 GLU A 21 CG CD OE1 OE2 REMARK 470 SER A 23 OG REMARK 470 LYS A 39 CG CD CE NZ REMARK 470 ARG A 101 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 102 CG CD CE NZ REMARK 470 ARG A 118 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 177 CG CD OE1 OE2 REMARK 470 ARG A 181 CG CD NE CZ NH1 NH2 REMARK 470 THR A 185 OG1 CG2 REMARK 470 SER A 186 OG REMARK 470 SER A 262 OG REMARK 470 GLU A 287 CG CD OE1 OE2 REMARK 470 LYS A 324 CG CD CE NZ REMARK 470 LYS A 337 CG CD CE NZ REMARK 470 LYS A 338 CG CD CE NZ REMARK 470 GLN A 354 CG CD OE1 NE2 REMARK 470 LYS B 49 CG CD CE NZ REMARK 470 LYS B 65 CG CD CE NZ REMARK 470 ARG B 69 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLU A 24 N - CA - C ANGL. DEV. = -19.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 11 94.14 -68.58 REMARK 500 SER A 23 81.57 -49.11 REMARK 500 ASN A 57 32.07 71.83 REMARK 500 ASN A 172 15.39 59.97 REMARK 500 LEU A 230 40.36 -77.61 REMARK 500 SER A 262 89.68 -150.63 REMARK 500 ALA A 280 41.04 -67.44 REMARK 500 GLN A 302 53.27 -91.74 REMARK 500 SER B 115 -120.11 -110.94 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2Z0E RELATED DB: PDB DBREF 2Z0D A 1 354 UNP Q9Y4P1 ATG4B_HUMAN 1 354 DBREF 2Z0D B 1 120 UNP Q62625 MLP3B_RAT 1 120 SEQADV 2Z0D GLY A -2 UNP Q9Y4P1 CLONING ARTIFACT SEQADV 2Z0D PRO A -1 UNP Q9Y4P1 CLONING ARTIFACT SEQADV 2Z0D HIS A 0 UNP Q9Y4P1 CLONING ARTIFACT SEQADV 2Z0D ALA A 280 UNP Q9Y4P1 HIS 280 ENGINEERED MUTATION SEQADV 2Z0D GLY B -4 UNP Q62625 CLONING ARTIFACT SEQADV 2Z0D PRO B -3 UNP Q62625 CLONING ARTIFACT SEQADV 2Z0D LEU B -2 UNP Q62625 CLONING ARTIFACT SEQADV 2Z0D GLY B -1 UNP Q62625 CLONING ARTIFACT SEQADV 2Z0D SER B 0 UNP Q62625 CLONING ARTIFACT SEQRES 1 A 357 GLY PRO HIS MET ASP ALA ALA THR LEU THR TYR ASP THR SEQRES 2 A 357 LEU ARG PHE ALA GLU PHE GLU ASP PHE PRO GLU THR SER SEQRES 3 A 357 GLU PRO VAL TRP ILE LEU GLY ARG LYS TYR SER ILE PHE SEQRES 4 A 357 THR GLU LYS ASP GLU ILE LEU SER ASP VAL ALA SER ARG SEQRES 5 A 357 LEU TRP PHE THR TYR ARG LYS ASN PHE PRO ALA ILE GLY SEQRES 6 A 357 GLY THR GLY PRO THR SER ASP THR GLY TRP GLY CYS MET SEQRES 7 A 357 LEU ARG CYS GLY GLN MET ILE PHE ALA GLN ALA LEU VAL SEQRES 8 A 357 CYS ARG HIS LEU GLY ARG ASP TRP ARG TRP THR GLN ARG SEQRES 9 A 357 LYS ARG GLN PRO ASP SER TYR PHE SER VAL LEU ASN ALA SEQRES 10 A 357 PHE ILE ASP ARG LYS ASP SER TYR TYR SER ILE HIS GLN SEQRES 11 A 357 ILE ALA GLN MET GLY VAL GLY GLU GLY LYS SER ILE GLY SEQRES 12 A 357 GLN TRP TYR GLY PRO ASN THR VAL ALA GLN VAL LEU LYS SEQRES 13 A 357 LYS LEU ALA VAL PHE ASP THR TRP SER SER LEU ALA VAL SEQRES 14 A 357 HIS ILE ALA MET ASP ASN THR VAL VAL MET GLU GLU ILE SEQRES 15 A 357 ARG ARG LEU CYS ARG THR SER VAL PRO CYS ALA GLY ALA SEQRES 16 A 357 THR ALA PHE PRO ALA ASP SER ASP ARG HIS CYS ASN GLY SEQRES 17 A 357 PHE PRO ALA GLY ALA GLU VAL THR ASN ARG PRO SER PRO SEQRES 18 A 357 TRP ARG PRO LEU VAL LEU LEU ILE PRO LEU ARG LEU GLY SEQRES 19 A 357 LEU THR ASP ILE ASN GLU ALA TYR VAL GLU THR LEU LYS SEQRES 20 A 357 HIS CYS PHE MET MET PRO GLN SER LEU GLY VAL ILE GLY SEQRES 21 A 357 GLY LYS PRO ASN SER ALA HIS TYR PHE ILE GLY TYR VAL SEQRES 22 A 357 GLY GLU GLU LEU ILE TYR LEU ASP PRO ALA THR THR GLN SEQRES 23 A 357 PRO ALA VAL GLU PRO THR ASP GLY CYS PHE ILE PRO ASP SEQRES 24 A 357 GLU SER PHE HIS CYS GLN HIS PRO PRO CYS ARG MET SER SEQRES 25 A 357 ILE ALA GLU LEU ASP PRO SER ILE ALA VAL GLY PHE PHE SEQRES 26 A 357 CYS LYS THR GLU ASP ASP PHE ASN ASP TRP CYS GLN GLN SEQRES 27 A 357 VAL LYS LYS LEU SER LEU LEU GLY GLY ALA LEU PRO MET SEQRES 28 A 357 PHE GLU LEU VAL GLU GLN SEQRES 1 B 125 GLY PRO LEU GLY SER MET PRO SER GLU LYS THR PHE LYS SEQRES 2 B 125 GLN ARG ARG SER PHE GLU GLN ARG VAL GLU ASP VAL ARG SEQRES 3 B 125 LEU ILE ARG GLU GLN HIS PRO THR LYS ILE PRO VAL ILE SEQRES 4 B 125 ILE GLU ARG TYR LYS GLY GLU LYS GLN LEU PRO VAL LEU SEQRES 5 B 125 ASP LYS THR LYS PHE LEU VAL PRO ASP HIS VAL ASN MET SEQRES 6 B 125 SER GLU LEU ILE LYS ILE ILE ARG ARG ARG LEU GLN LEU SEQRES 7 B 125 ASN ALA ASN GLN ALA PHE PHE LEU LEU VAL ASN GLY HIS SEQRES 8 B 125 SER MET VAL SER VAL SER THR PRO ILE SER GLU VAL TYR SEQRES 9 B 125 GLU SER GLU ARG ASP GLU ASP GLY PHE LEU TYR MET VAL SEQRES 10 B 125 TYR ALA SER GLN GLU THR PHE GLY FORMUL 3 HOH *314(H2 O) HELIX 1 1 ARG A 12 GLU A 17 5 6 HELIX 2 2 GLU A 38 ARG A 49 1 12 HELIX 3 3 ALA A 60 THR A 64 5 5 HELIX 4 4 GLY A 73 LEU A 92 1 20 HELIX 5 5 PRO A 105 ALA A 114 1 10 HELIX 6 6 SER A 124 GLU A 135 1 12 HELIX 7 7 GLY A 144 VAL A 157 1 14 HELIX 8 8 MET A 176 ARG A 184 1 9 HELIX 9 9 ASN A 236 CYS A 246 1 11 HELIX 10 10 ASP A 296 HIS A 300 5 5 HELIX 11 11 ALA A 311 LEU A 313 5 3 HELIX 12 12 THR A 325 LEU A 339 1 15 HELIX 13 13 THR B 6 ARG B 11 1 6 HELIX 14 14 SER B 12 HIS B 27 1 16 HELIX 15 15 ASN B 59 LEU B 71 1 13 HELIX 16 16 PRO B 94 ARG B 103 1 10 SHEET 1 A 7 ARG A 31 TYR A 33 0 SHEET 2 A 7 VAL A 26 ILE A 28 -1 N VAL A 26 O TYR A 33 SHEET 3 A 7 SER A 262 VAL A 270 -1 O TYR A 269 N TRP A 27 SHEET 4 A 7 SER A 252 LYS A 259 -1 N VAL A 255 O PHE A 266 SHEET 5 A 7 SER A 316 CYS A 323 -1 O GLY A 320 N LEU A 253 SHEET 6 A 7 LEU A 222 ARG A 229 -1 N ILE A 226 O VAL A 319 SHEET 7 A 7 ALA A 165 ILE A 168 1 N ALA A 165 O VAL A 223 SHEET 1 B 5 ARG A 31 TYR A 33 0 SHEET 2 B 5 VAL A 26 ILE A 28 -1 N VAL A 26 O TYR A 33 SHEET 3 B 5 SER A 262 VAL A 270 -1 O TYR A 269 N TRP A 27 SHEET 4 B 5 GLU A 273 LEU A 277 -1 O ILE A 275 N GLY A 268 SHEET 5 B 5 CYS A 306 SER A 309 -1 O MET A 308 N LEU A 274 SHEET 1 C 2 TYR A 54 LYS A 56 0 SHEET 2 C 2 THR A 282 PRO A 284 1 O GLN A 283 N TYR A 54 SHEET 1 D 2 THR A 173 VAL A 175 0 SHEET 2 D 2 GLU A 350 VAL A 352 1 O VAL A 352 N VAL A 174 SHEET 1 E 4 LYS B 51 PRO B 55 0 SHEET 2 E 4 LYS B 30 ARG B 37 -1 N ILE B 31 O VAL B 54 SHEET 3 E 4 LEU B 109 ALA B 114 1 O LEU B 109 N ILE B 34 SHEET 4 E 4 PHE B 80 LEU B 82 -1 N LEU B 82 O VAL B 112 CRYST1 47.475 91.812 102.594 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021064 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010892 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009747 0.00000