data_2Z0H # _entry.id 2Z0H # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.280 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 2Z0H RCSB RCSB027365 WWPDB D_1000027365 # _pdbx_database_PDB_obs_spr.id OBSLTE _pdbx_database_PDB_obs_spr.date 2009-06-02 _pdbx_database_PDB_obs_spr.pdb_id 3HJN _pdbx_database_PDB_obs_spr.replace_pdb_id 2Z0H _pdbx_database_PDB_obs_spr.details ? # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id tma001001099.1 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code OBS _pdbx_database_status.entry_id 2Z0H _pdbx_database_status.recvd_initial_deposition_date 2007-05-07 _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf OBS _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Nakagawa, N.' 1 'Yoshikawa, S.' 2 'Shirouzu, M.' 3 'Yokoyama, S.' 4 'Kuramitsu, S.' 5 'RIKEN Structural Genomics/Proteomics Initiative (RSGI)' 6 # _citation.id primary _citation.title 'Crystal structure of thymidylate kinase in complex with dTDP and ADP from Thermotoga maritima' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Nakagawa, N.' 1 primary 'Yoshikawa, S.' 2 primary 'Shirouzu, M.' 3 primary 'Yokoyama, S.' 4 primary 'Kuramitsu, S.' 5 # _cell.entry_id 2Z0H _cell.length_a 51.587 _cell.length_b 127.050 _cell.length_c 133.519 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 2Z0H _symmetry.space_group_name_H-M 'I 2 2 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Thymidylate kinase' 22885.275 2 2.7.4.9 ? ? ? 2 non-polymer syn "ADENOSINE-5'-DIPHOSPHATE" 427.201 2 ? ? ? ? 3 non-polymer syn "THYMIDINE-5'-DIPHOSPHATE" 402.188 2 ? ? ? ? 4 water nat water 18.015 41 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'dTMP kinase' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MFITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKREPGGTETGEKIRKILLEEEVTPKAELFLFLASRNLLVTEIKQYLS EGYAVLLDRYTDSSVAYQGFGRNLGKEIVEELNDFATDGLIPDLTFYIDVDVETALKRKGELNRFEKREFLERVREGYLV LAREHPERIVVLDGKRSIEEIHRDVVREVKRRWKLDV ; _entity_poly.pdbx_seq_one_letter_code_can ;MFITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKREPGGTETGEKIRKILLEEEVTPKAELFLFLASRNLLVTEIKQYLS EGYAVLLDRYTDSSVAYQGFGRNLGKEIVEELNDFATDGLIPDLTFYIDVDVETALKRKGELNRFEKREFLERVREGYLV LAREHPERIVVLDGKRSIEEIHRDVVREVKRRWKLDV ; _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier tma001001099.1 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 PHE n 1 3 ILE n 1 4 THR n 1 5 PHE n 1 6 GLU n 1 7 GLY n 1 8 ILE n 1 9 ASP n 1 10 GLY n 1 11 SER n 1 12 GLY n 1 13 LYS n 1 14 SER n 1 15 THR n 1 16 GLN n 1 17 ILE n 1 18 GLN n 1 19 LEU n 1 20 LEU n 1 21 ALA n 1 22 GLN n 1 23 TYR n 1 24 LEU n 1 25 GLU n 1 26 LYS n 1 27 ARG n 1 28 GLY n 1 29 LYS n 1 30 LYS n 1 31 VAL n 1 32 ILE n 1 33 LEU n 1 34 LYS n 1 35 ARG n 1 36 GLU n 1 37 PRO n 1 38 GLY n 1 39 GLY n 1 40 THR n 1 41 GLU n 1 42 THR n 1 43 GLY n 1 44 GLU n 1 45 LYS n 1 46 ILE n 1 47 ARG n 1 48 LYS n 1 49 ILE n 1 50 LEU n 1 51 LEU n 1 52 GLU n 1 53 GLU n 1 54 GLU n 1 55 VAL n 1 56 THR n 1 57 PRO n 1 58 LYS n 1 59 ALA n 1 60 GLU n 1 61 LEU n 1 62 PHE n 1 63 LEU n 1 64 PHE n 1 65 LEU n 1 66 ALA n 1 67 SER n 1 68 ARG n 1 69 ASN n 1 70 LEU n 1 71 LEU n 1 72 VAL n 1 73 THR n 1 74 GLU n 1 75 ILE n 1 76 LYS n 1 77 GLN n 1 78 TYR n 1 79 LEU n 1 80 SER n 1 81 GLU n 1 82 GLY n 1 83 TYR n 1 84 ALA n 1 85 VAL n 1 86 LEU n 1 87 LEU n 1 88 ASP n 1 89 ARG n 1 90 TYR n 1 91 THR n 1 92 ASP n 1 93 SER n 1 94 SER n 1 95 VAL n 1 96 ALA n 1 97 TYR n 1 98 GLN n 1 99 GLY n 1 100 PHE n 1 101 GLY n 1 102 ARG n 1 103 ASN n 1 104 LEU n 1 105 GLY n 1 106 LYS n 1 107 GLU n 1 108 ILE n 1 109 VAL n 1 110 GLU n 1 111 GLU n 1 112 LEU n 1 113 ASN n 1 114 ASP n 1 115 PHE n 1 116 ALA n 1 117 THR n 1 118 ASP n 1 119 GLY n 1 120 LEU n 1 121 ILE n 1 122 PRO n 1 123 ASP n 1 124 LEU n 1 125 THR n 1 126 PHE n 1 127 TYR n 1 128 ILE n 1 129 ASP n 1 130 VAL n 1 131 ASP n 1 132 VAL n 1 133 GLU n 1 134 THR n 1 135 ALA n 1 136 LEU n 1 137 LYS n 1 138 ARG n 1 139 LYS n 1 140 GLY n 1 141 GLU n 1 142 LEU n 1 143 ASN n 1 144 ARG n 1 145 PHE n 1 146 GLU n 1 147 LYS n 1 148 ARG n 1 149 GLU n 1 150 PHE n 1 151 LEU n 1 152 GLU n 1 153 ARG n 1 154 VAL n 1 155 ARG n 1 156 GLU n 1 157 GLY n 1 158 TYR n 1 159 LEU n 1 160 VAL n 1 161 LEU n 1 162 ALA n 1 163 ARG n 1 164 GLU n 1 165 HIS n 1 166 PRO n 1 167 GLU n 1 168 ARG n 1 169 ILE n 1 170 VAL n 1 171 VAL n 1 172 LEU n 1 173 ASP n 1 174 GLY n 1 175 LYS n 1 176 ARG n 1 177 SER n 1 178 ILE n 1 179 GLU n 1 180 GLU n 1 181 ILE n 1 182 HIS n 1 183 ARG n 1 184 ASP n 1 185 VAL n 1 186 VAL n 1 187 ARG n 1 188 GLU n 1 189 VAL n 1 190 LYS n 1 191 ARG n 1 192 ARG n 1 193 TRP n 1 194 LYS n 1 195 LEU n 1 196 ASP n 1 197 VAL n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Thermotoga _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species 'Thermotoga maritima' _entity_src_gen.gene_src_strain MSB8 _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Thermotoga maritima MSB8' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 243274 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21-CodonPlus(DE3)-RIL' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET-21a _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code KTHY_THEMA _struct_ref.pdbx_db_accession Q9X0I3 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MFITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKREPGGTETGEKIRKILLEEEVTPKAELFLFLASRNLLVTEIKQYLS EGYAVLLDRYTDSSVAYQGFGRNLGKEIVEELNDFATDGLIPDLTFYIDVDVETALKRKGELNRFEKREFLERVREGYLV LAREHPERIVVLDGKRSIEEIHRDVVREVKRRWKLDV ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2Z0H A 1 ? 197 ? Q9X0I3 1 ? 197 ? 1 197 2 1 2Z0H B 1 ? 197 ? Q9X0I3 1 ? 197 ? 1 197 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ADP non-polymer n "ADENOSINE-5'-DIPHOSPHATE" ? 'C10 H15 N5 O10 P2' 427.201 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYD non-polymer . "THYMIDINE-5'-DIPHOSPHATE" ? 'C10 H16 N2 O11 P2' 402.188 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 2Z0H _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.39 _exptl_crystal.density_percent_sol 48.53 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.4 _exptl_crystal_grow.pdbx_details '0.2M LiSulfate, 20% PEG 3350, pH 6.4, VAPOR DIFFUSION, SITTING DROP, temperature 293K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'RIGAKU JUPITER 210' _diffrn_detector.pdbx_collection_date 2007-03-12 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'SI Double-Crystal' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.0000 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'SPRING-8 BEAMLINE BL26B2' _diffrn_source.pdbx_synchrotron_site SPring-8 _diffrn_source.pdbx_synchrotron_beamline BL26B2 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.0000 # _reflns.entry_id 2Z0H _reflns.observed_criterion_sigma_I -3 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 50.0 _reflns.d_resolution_high 2.10 _reflns.number_obs 25815 _reflns.number_all ? _reflns.percent_possible_obs 98.7 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value 0.055 _reflns.pdbx_netI_over_sigmaI 37.361 _reflns.B_iso_Wilson_estimate 15.9 _reflns.pdbx_redundancy 6.701 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 2.10 _reflns_shell.d_res_low 2.18 _reflns_shell.percent_possible_all 91.4 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value 0.207 _reflns_shell.meanI_over_sigI_obs 3.964 _reflns_shell.pdbx_redundancy 5.5 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 2362 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 2Z0H _refine.ls_number_reflns_obs 25398 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF 172179.82 _refine.pdbx_data_cutoff_low_absF 0.000000 _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 47.80 _refine.ls_d_res_high 2.10 _refine.ls_percent_reflns_obs 97.2 _refine.ls_R_factor_obs ? _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.238 _refine.ls_R_factor_R_free 0.3 _refine.ls_R_factor_R_free_error 0.006 _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 9.8 _refine.ls_number_reflns_R_free 2499 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 49.4 _refine.aniso_B[1][1] -1.24 _refine.aniso_B[2][2] 8.56 _refine.aniso_B[3][3] -7.32 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'FLAT MODEL' _refine.solvent_model_param_ksol 0.369558 _refine.solvent_model_param_bsol 70.2185 _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model 'PDB ENTRY 2CCG' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model RESTRAINED _refine.pdbx_stereochemistry_target_values 'Engh & Huber' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_overall_phase_error ? _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 2Z0H _refine_analyze.Luzzati_coordinate_error_obs 0.29 _refine_analyze.Luzzati_sigma_a_obs 0.25 _refine_analyze.Luzzati_d_res_low_obs 5.00 _refine_analyze.Luzzati_coordinate_error_free 0.39 _refine_analyze.Luzzati_sigma_a_free 0.34 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2942 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 104 _refine_hist.number_atoms_solvent 41 _refine_hist.number_atoms_total 3087 _refine_hist.d_res_high 2.10 _refine_hist.d_res_low 47.80 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d 0.010 ? ? ? 'X-RAY DIFFRACTION' ? c_bond_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_bond_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg 1.5 ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d 21.4 ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d 0.95 ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_mcbond_it 6.74 1.50 ? ? 'X-RAY DIFFRACTION' ? c_mcangle_it 8.12 2.00 ? ? 'X-RAY DIFFRACTION' ? c_scbond_it 9.77 2.00 ? ? 'X-RAY DIFFRACTION' ? c_scangle_it 11.04 2.50 ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 6 _refine_ls_shell.d_res_high 2.10 _refine_ls_shell.d_res_low 2.23 _refine_ls_shell.number_reflns_R_work 3453 _refine_ls_shell.R_factor_R_work 0.301 _refine_ls_shell.percent_reflns_obs 89.1 _refine_ls_shell.R_factor_R_free 0.381 _refine_ls_shell.R_factor_R_free_error 0.020 _refine_ls_shell.percent_reflns_R_free 9.8 _refine_ls_shell.number_reflns_R_free 374 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs 3827 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # loop_ _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file _pdbx_xplor_file.pdbx_refine_id 1 protein_rep.param protein.top 'X-RAY DIFFRACTION' 2 water_rep.param water.top 'X-RAY DIFFRACTION' 3 TDP.param TDP.top 'X-RAY DIFFRACTION' 4 ADP.param ADP.top 'X-RAY DIFFRACTION' # _struct.entry_id 2Z0H _struct.title 'Crystal structure of thymidylate kinase in complex with dTDP and ADP from Thermotoga maritima' _struct.pdbx_descriptor 'Thymidylate kinase (E.C.2.7.4.9)' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2Z0H _struct_keywords.pdbx_keywords TRANSFERASE _struct_keywords.text ;thymidylate kinase, ATP-binding, Nucleotide biosynthesis, Nucleotide-binding, Transferase, Structural Genomics, NPPSFA, National Project on Protein Structural and Functional Analyses, RIKEN Structural Genomics/Proteomics Initiative, RSGI ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 3 ? E N N 2 ? F N N 3 ? G N N 4 ? H N N 4 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLY A 12 ? ARG A 27 ? GLY A 12 ARG A 27 1 ? 16 HELX_P HELX_P2 2 THR A 40 ? GLU A 53 ? THR A 40 GLU A 53 1 ? 14 HELX_P HELX_P3 3 THR A 56 ? LYS A 76 ? THR A 56 LYS A 76 1 ? 21 HELX_P HELX_P4 4 TYR A 90 ? GLN A 98 ? TYR A 90 GLN A 98 1 ? 9 HELX_P HELX_P5 5 GLY A 105 ? ASP A 118 ? GLY A 105 ASP A 118 1 ? 14 HELX_P HELX_P6 6 ASP A 131 ? LYS A 139 ? ASP A 131 LYS A 139 1 ? 9 HELX_P HELX_P7 7 LYS A 147 ? HIS A 165 ? LYS A 147 HIS A 165 1 ? 19 HELX_P HELX_P8 8 SER A 177 ? VAL A 189 ? SER A 177 VAL A 189 1 ? 13 HELX_P HELX_P9 9 GLY B 12 ? TYR B 23 ? GLY B 12 TYR B 23 1 ? 12 HELX_P HELX_P10 10 THR B 40 ? GLU B 53 ? THR B 40 GLU B 53 1 ? 14 HELX_P HELX_P11 11 THR B 56 ? GLU B 74 ? THR B 56 GLU B 74 1 ? 19 HELX_P HELX_P12 12 TYR B 90 ? GLN B 98 ? TYR B 90 GLN B 98 1 ? 9 HELX_P HELX_P13 13 GLY B 105 ? ASP B 118 ? GLY B 105 ASP B 118 1 ? 14 HELX_P HELX_P14 14 ASP B 131 ? ARG B 138 ? ASP B 131 ARG B 138 1 ? 8 HELX_P HELX_P15 15 LYS B 147 ? ARG B 163 ? LYS B 147 ARG B 163 1 ? 17 HELX_P HELX_P16 16 SER B 177 ? ARG B 187 ? SER B 177 ARG B 187 1 ? 11 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 GLU 36 A . ? GLU 36 A PRO 37 A ? PRO 37 A 1 -0.53 2 GLU 36 B . ? GLU 36 B PRO 37 B ? PRO 37 B 1 -0.49 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 5 ? B ? 5 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? parallel A 2 3 ? parallel A 3 4 ? parallel A 4 5 ? parallel B 1 2 ? parallel B 2 3 ? parallel B 3 4 ? parallel B 4 5 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 VAL A 31 ? ARG A 35 ? VAL A 31 ARG A 35 A 2 ALA A 84 ? ASP A 88 ? ALA A 84 ASP A 88 A 3 PHE A 2 ? GLU A 6 ? PHE A 2 GLU A 6 A 4 LEU A 124 ? ASP A 129 ? LEU A 124 ASP A 129 A 5 ILE A 169 ? ASP A 173 ? ILE A 169 ASP A 173 B 1 VAL B 31 ? ARG B 35 ? VAL B 31 ARG B 35 B 2 ALA B 84 ? ASP B 88 ? ALA B 84 ASP B 88 B 3 ILE B 3 ? GLU B 6 ? ILE B 3 GLU B 6 B 4 LEU B 124 ? ASP B 129 ? LEU B 124 ASP B 129 B 5 ILE B 169 ? ASP B 173 ? ILE B 169 ASP B 173 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N ILE A 32 ? N ILE A 32 O LEU A 86 ? O LEU A 86 A 2 3 O VAL A 85 ? O VAL A 85 N ILE A 3 ? N ILE A 3 A 3 4 N THR A 4 ? N THR A 4 O PHE A 126 ? O PHE A 126 A 4 5 N THR A 125 ? N THR A 125 O VAL A 170 ? O VAL A 170 B 1 2 N ILE B 32 ? N ILE B 32 O ALA B 84 ? O ALA B 84 B 2 3 O LEU B 87 ? O LEU B 87 N ILE B 3 ? N ILE B 3 B 3 4 N GLU B 6 ? N GLU B 6 O PHE B 126 ? O PHE B 126 B 4 5 N TYR B 127 ? N TYR B 127 O LEU B 172 ? O LEU B 172 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 16 'BINDING SITE FOR RESIDUE ADP A 301' AC2 Software ? ? ? ? 14 'BINDING SITE FOR RESIDUE TYD A 401' AC3 Software ? ? ? ? 13 'BINDING SITE FOR RESIDUE ADP B 302' AC4 Software ? ? ? ? 15 'BINDING SITE FOR RESIDUE TYD B 402' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 16 ASP A 9 ? ASP A 9 . ? 1_555 ? 2 AC1 16 LYS A 13 ? LYS A 13 . ? 1_555 ? 3 AC1 16 GLU A 36 ? GLU A 36 . ? 1_555 ? 4 AC1 16 PRO A 37 ? PRO A 37 . ? 1_555 ? 5 AC1 16 ARG A 47 ? ARG A 47 . ? 1_555 ? 6 AC1 16 PHE A 64 ? PHE A 64 . ? 1_555 ? 7 AC1 16 ARG A 68 ? ARG A 68 . ? 1_555 ? 8 AC1 16 ARG A 89 ? ARG A 89 . ? 1_555 ? 9 AC1 16 SER A 93 ? SER A 93 . ? 1_555 ? 10 AC1 16 SER A 94 ? SER A 94 . ? 1_555 ? 11 AC1 16 TYR A 97 ? TYR A 97 . ? 1_555 ? 12 AC1 16 GLN A 98 ? GLN A 98 . ? 1_555 ? 13 AC1 16 LYS A 139 ? LYS A 139 . ? 1_555 ? 14 AC1 16 PHE A 145 ? PHE A 145 . ? 1_555 ? 15 AC1 16 TYD D . ? TYD A 401 . ? 1_555 ? 16 AC1 16 HOH G . ? HOH A 403 . ? 1_555 ? 17 AC2 14 ILE A 8 ? ILE A 8 . ? 1_555 ? 18 AC2 14 GLY A 10 ? GLY A 10 . ? 1_555 ? 19 AC2 14 SER A 11 ? SER A 11 . ? 1_555 ? 20 AC2 14 GLY A 12 ? GLY A 12 . ? 1_555 ? 21 AC2 14 LYS A 13 ? LYS A 13 . ? 1_555 ? 22 AC2 14 SER A 14 ? SER A 14 . ? 1_555 ? 23 AC2 14 THR A 15 ? THR A 15 . ? 1_555 ? 24 AC2 14 ARG A 138 ? ARG A 138 . ? 1_555 ? 25 AC2 14 LYS A 139 ? LYS A 139 . ? 1_555 ? 26 AC2 14 ARG A 176 ? ARG A 176 . ? 1_555 ? 27 AC2 14 ILE A 178 ? ILE A 178 . ? 1_555 ? 28 AC2 14 ADP C . ? ADP A 301 . ? 1_555 ? 29 AC2 14 HOH G . ? HOH A 413 . ? 1_555 ? 30 AC2 14 HOH G . ? HOH A 432 . ? 1_555 ? 31 AC3 13 ASP B 9 ? ASP B 9 . ? 1_555 ? 32 AC3 13 GLY B 10 ? GLY B 10 . ? 1_555 ? 33 AC3 13 LYS B 13 ? LYS B 13 . ? 1_555 ? 34 AC3 13 ARG B 47 ? ARG B 47 . ? 1_555 ? 35 AC3 13 PHE B 64 ? PHE B 64 . ? 1_555 ? 36 AC3 13 ARG B 68 ? ARG B 68 . ? 1_555 ? 37 AC3 13 ARG B 89 ? ARG B 89 . ? 1_555 ? 38 AC3 13 SER B 93 ? SER B 93 . ? 1_555 ? 39 AC3 13 SER B 94 ? SER B 94 . ? 1_555 ? 40 AC3 13 TYR B 97 ? TYR B 97 . ? 1_555 ? 41 AC3 13 GLN B 98 ? GLN B 98 . ? 1_555 ? 42 AC3 13 PHE B 145 ? PHE B 145 . ? 1_555 ? 43 AC3 13 TYD F . ? TYD B 402 . ? 1_555 ? 44 AC4 15 GLY B 10 ? GLY B 10 . ? 1_555 ? 45 AC4 15 SER B 11 ? SER B 11 . ? 1_555 ? 46 AC4 15 GLY B 12 ? GLY B 12 . ? 1_555 ? 47 AC4 15 LYS B 13 ? LYS B 13 . ? 1_555 ? 48 AC4 15 SER B 14 ? SER B 14 . ? 1_555 ? 49 AC4 15 THR B 15 ? THR B 15 . ? 1_555 ? 50 AC4 15 GLN B 16 ? GLN B 16 . ? 1_555 ? 51 AC4 15 GLN B 22 ? GLN B 22 . ? 2_445 ? 52 AC4 15 ARG B 138 ? ARG B 138 . ? 1_555 ? 53 AC4 15 GLY B 174 ? GLY B 174 . ? 1_555 ? 54 AC4 15 ARG B 176 ? ARG B 176 . ? 1_555 ? 55 AC4 15 SER B 177 ? SER B 177 . ? 1_555 ? 56 AC4 15 ILE B 178 ? ILE B 178 . ? 1_555 ? 57 AC4 15 ILE B 181 ? ILE B 181 . ? 1_555 ? 58 AC4 15 ADP E . ? ADP B 302 . ? 1_555 ? # _database_PDB_matrix.entry_id 2Z0H _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2Z0H _atom_sites.fract_transf_matrix[1][1] 0.019385 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.007871 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.007490 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 1 1 MET MET A . n A 1 2 PHE 2 2 2 PHE PHE A . n A 1 3 ILE 3 3 3 ILE ILE A . n A 1 4 THR 4 4 4 THR THR A . n A 1 5 PHE 5 5 5 PHE PHE A . n A 1 6 GLU 6 6 6 GLU GLU A . n A 1 7 GLY 7 7 7 GLY GLY A . n A 1 8 ILE 8 8 8 ILE ILE A . n A 1 9 ASP 9 9 9 ASP ASP A . n A 1 10 GLY 10 10 10 GLY GLY A . n A 1 11 SER 11 11 11 SER SER A . n A 1 12 GLY 12 12 12 GLY GLY A . n A 1 13 LYS 13 13 13 LYS LYS A . n A 1 14 SER 14 14 14 SER SER A . n A 1 15 THR 15 15 15 THR THR A . n A 1 16 GLN 16 16 16 GLN GLN A . n A 1 17 ILE 17 17 17 ILE ILE A . n A 1 18 GLN 18 18 18 GLN GLN A . n A 1 19 LEU 19 19 19 LEU LEU A . n A 1 20 LEU 20 20 20 LEU LEU A . n A 1 21 ALA 21 21 21 ALA ALA A . n A 1 22 GLN 22 22 22 GLN GLN A . n A 1 23 TYR 23 23 23 TYR TYR A . n A 1 24 LEU 24 24 24 LEU LEU A . n A 1 25 GLU 25 25 25 GLU GLU A . n A 1 26 LYS 26 26 26 LYS LYS A . n A 1 27 ARG 27 27 27 ARG ARG A . n A 1 28 GLY 28 28 28 GLY GLY A . n A 1 29 LYS 29 29 ? ? ? A . n A 1 30 LYS 30 30 30 LYS LYS A . n A 1 31 VAL 31 31 31 VAL VAL A . n A 1 32 ILE 32 32 32 ILE ILE A . n A 1 33 LEU 33 33 33 LEU LEU A . n A 1 34 LYS 34 34 34 LYS LYS A . n A 1 35 ARG 35 35 35 ARG ARG A . n A 1 36 GLU 36 36 36 GLU GLU A . n A 1 37 PRO 37 37 37 PRO PRO A . n A 1 38 GLY 38 38 38 GLY GLY A . n A 1 39 GLY 39 39 39 GLY GLY A . n A 1 40 THR 40 40 40 THR THR A . n A 1 41 GLU 41 41 41 GLU GLU A . n A 1 42 THR 42 42 42 THR THR A . n A 1 43 GLY 43 43 43 GLY GLY A . n A 1 44 GLU 44 44 44 GLU GLU A . n A 1 45 LYS 45 45 45 LYS LYS A . n A 1 46 ILE 46 46 46 ILE ILE A . n A 1 47 ARG 47 47 47 ARG ARG A . n A 1 48 LYS 48 48 48 LYS LYS A . n A 1 49 ILE 49 49 49 ILE ILE A . n A 1 50 LEU 50 50 50 LEU LEU A . n A 1 51 LEU 51 51 51 LEU LEU A . n A 1 52 GLU 52 52 52 GLU GLU A . n A 1 53 GLU 53 53 53 GLU GLU A . n A 1 54 GLU 54 54 54 GLU GLU A . n A 1 55 VAL 55 55 55 VAL VAL A . n A 1 56 THR 56 56 56 THR THR A . n A 1 57 PRO 57 57 57 PRO PRO A . n A 1 58 LYS 58 58 58 LYS LYS A . n A 1 59 ALA 59 59 59 ALA ALA A . n A 1 60 GLU 60 60 60 GLU GLU A . n A 1 61 LEU 61 61 61 LEU LEU A . n A 1 62 PHE 62 62 62 PHE PHE A . n A 1 63 LEU 63 63 63 LEU LEU A . n A 1 64 PHE 64 64 64 PHE PHE A . n A 1 65 LEU 65 65 65 LEU LEU A . n A 1 66 ALA 66 66 66 ALA ALA A . n A 1 67 SER 67 67 67 SER SER A . n A 1 68 ARG 68 68 68 ARG ARG A . n A 1 69 ASN 69 69 69 ASN ASN A . n A 1 70 LEU 70 70 70 LEU LEU A . n A 1 71 LEU 71 71 71 LEU LEU A . n A 1 72 VAL 72 72 72 VAL VAL A . n A 1 73 THR 73 73 73 THR THR A . n A 1 74 GLU 74 74 74 GLU GLU A . n A 1 75 ILE 75 75 75 ILE ILE A . n A 1 76 LYS 76 76 76 LYS LYS A . n A 1 77 GLN 77 77 77 GLN GLN A . n A 1 78 TYR 78 78 78 TYR TYR A . n A 1 79 LEU 79 79 ? ? ? A . n A 1 80 SER 80 80 ? ? ? A . n A 1 81 GLU 81 81 ? ? ? A . n A 1 82 GLY 82 82 ? ? ? A . n A 1 83 TYR 83 83 83 TYR TYR A . n A 1 84 ALA 84 84 84 ALA ALA A . n A 1 85 VAL 85 85 85 VAL VAL A . n A 1 86 LEU 86 86 86 LEU LEU A . n A 1 87 LEU 87 87 87 LEU LEU A . n A 1 88 ASP 88 88 88 ASP ASP A . n A 1 89 ARG 89 89 89 ARG ARG A . n A 1 90 TYR 90 90 90 TYR TYR A . n A 1 91 THR 91 91 91 THR THR A . n A 1 92 ASP 92 92 92 ASP ASP A . n A 1 93 SER 93 93 93 SER SER A . n A 1 94 SER 94 94 94 SER SER A . n A 1 95 VAL 95 95 95 VAL VAL A . n A 1 96 ALA 96 96 96 ALA ALA A . n A 1 97 TYR 97 97 97 TYR TYR A . n A 1 98 GLN 98 98 98 GLN GLN A . n A 1 99 GLY 99 99 99 GLY GLY A . n A 1 100 PHE 100 100 100 PHE PHE A . n A 1 101 GLY 101 101 101 GLY GLY A . n A 1 102 ARG 102 102 102 ARG ARG A . n A 1 103 ASN 103 103 103 ASN ASN A . n A 1 104 LEU 104 104 104 LEU LEU A . n A 1 105 GLY 105 105 105 GLY GLY A . n A 1 106 LYS 106 106 106 LYS LYS A . n A 1 107 GLU 107 107 107 GLU GLU A . n A 1 108 ILE 108 108 108 ILE ILE A . n A 1 109 VAL 109 109 109 VAL VAL A . n A 1 110 GLU 110 110 110 GLU GLU A . n A 1 111 GLU 111 111 111 GLU GLU A . n A 1 112 LEU 112 112 112 LEU LEU A . n A 1 113 ASN 113 113 113 ASN ASN A . n A 1 114 ASP 114 114 114 ASP ASP A . n A 1 115 PHE 115 115 115 PHE PHE A . n A 1 116 ALA 116 116 116 ALA ALA A . n A 1 117 THR 117 117 117 THR THR A . n A 1 118 ASP 118 118 118 ASP ASP A . n A 1 119 GLY 119 119 119 GLY GLY A . n A 1 120 LEU 120 120 120 LEU LEU A . n A 1 121 ILE 121 121 121 ILE ILE A . n A 1 122 PRO 122 122 122 PRO PRO A . n A 1 123 ASP 123 123 123 ASP ASP A . n A 1 124 LEU 124 124 124 LEU LEU A . n A 1 125 THR 125 125 125 THR THR A . n A 1 126 PHE 126 126 126 PHE PHE A . n A 1 127 TYR 127 127 127 TYR TYR A . n A 1 128 ILE 128 128 128 ILE ILE A . n A 1 129 ASP 129 129 129 ASP ASP A . n A 1 130 VAL 130 130 130 VAL VAL A . n A 1 131 ASP 131 131 131 ASP ASP A . n A 1 132 VAL 132 132 132 VAL VAL A . n A 1 133 GLU 133 133 133 GLU GLU A . n A 1 134 THR 134 134 134 THR THR A . n A 1 135 ALA 135 135 135 ALA ALA A . n A 1 136 LEU 136 136 136 LEU LEU A . n A 1 137 LYS 137 137 137 LYS LYS A . n A 1 138 ARG 138 138 138 ARG ARG A . n A 1 139 LYS 139 139 139 LYS LYS A . n A 1 140 GLY 140 140 ? ? ? A . n A 1 141 GLU 141 141 ? ? ? A . n A 1 142 LEU 142 142 ? ? ? A . n A 1 143 ASN 143 143 143 ASN ASN A . n A 1 144 ARG 144 144 144 ARG ARG A . n A 1 145 PHE 145 145 145 PHE PHE A . n A 1 146 GLU 146 146 146 GLU GLU A . n A 1 147 LYS 147 147 147 LYS LYS A . n A 1 148 ARG 148 148 148 ARG ARG A . n A 1 149 GLU 149 149 149 GLU GLU A . n A 1 150 PHE 150 150 150 PHE PHE A . n A 1 151 LEU 151 151 151 LEU LEU A . n A 1 152 GLU 152 152 152 GLU GLU A . n A 1 153 ARG 153 153 153 ARG ARG A . n A 1 154 VAL 154 154 154 VAL VAL A . n A 1 155 ARG 155 155 155 ARG ARG A . n A 1 156 GLU 156 156 156 GLU GLU A . n A 1 157 GLY 157 157 157 GLY GLY A . n A 1 158 TYR 158 158 158 TYR TYR A . n A 1 159 LEU 159 159 159 LEU LEU A . n A 1 160 VAL 160 160 160 VAL VAL A . n A 1 161 LEU 161 161 161 LEU LEU A . n A 1 162 ALA 162 162 162 ALA ALA A . n A 1 163 ARG 163 163 163 ARG ARG A . n A 1 164 GLU 164 164 164 GLU GLU A . n A 1 165 HIS 165 165 165 HIS HIS A . n A 1 166 PRO 166 166 166 PRO PRO A . n A 1 167 GLU 167 167 167 GLU GLU A . n A 1 168 ARG 168 168 168 ARG ARG A . n A 1 169 ILE 169 169 169 ILE ILE A . n A 1 170 VAL 170 170 170 VAL VAL A . n A 1 171 VAL 171 171 171 VAL VAL A . n A 1 172 LEU 172 172 172 LEU LEU A . n A 1 173 ASP 173 173 173 ASP ASP A . n A 1 174 GLY 174 174 174 GLY GLY A . n A 1 175 LYS 175 175 175 LYS LYS A . n A 1 176 ARG 176 176 176 ARG ARG A . n A 1 177 SER 177 177 177 SER SER A . n A 1 178 ILE 178 178 178 ILE ILE A . n A 1 179 GLU 179 179 179 GLU GLU A . n A 1 180 GLU 180 180 180 GLU GLU A . n A 1 181 ILE 181 181 181 ILE ILE A . n A 1 182 HIS 182 182 182 HIS HIS A . n A 1 183 ARG 183 183 183 ARG ARG A . n A 1 184 ASP 184 184 184 ASP ASP A . n A 1 185 VAL 185 185 185 VAL VAL A . n A 1 186 VAL 186 186 186 VAL VAL A . n A 1 187 ARG 187 187 187 ARG ARG A . n A 1 188 GLU 188 188 188 GLU GLU A . n A 1 189 VAL 189 189 189 VAL VAL A . n A 1 190 LYS 190 190 190 LYS LYS A . n A 1 191 ARG 191 191 191 ARG ARG A . n A 1 192 ARG 192 192 192 ARG ARG A . n A 1 193 TRP 193 193 ? ? ? A . n A 1 194 LYS 194 194 ? ? ? A . n A 1 195 LEU 195 195 ? ? ? A . n A 1 196 ASP 196 196 ? ? ? A . n A 1 197 VAL 197 197 ? ? ? A . n B 1 1 MET 1 1 ? ? ? B . n B 1 2 PHE 2 2 2 PHE PHE B . n B 1 3 ILE 3 3 3 ILE ILE B . n B 1 4 THR 4 4 4 THR THR B . n B 1 5 PHE 5 5 5 PHE PHE B . n B 1 6 GLU 6 6 6 GLU GLU B . n B 1 7 GLY 7 7 7 GLY GLY B . n B 1 8 ILE 8 8 8 ILE ILE B . n B 1 9 ASP 9 9 9 ASP ASP B . n B 1 10 GLY 10 10 10 GLY GLY B . n B 1 11 SER 11 11 11 SER SER B . n B 1 12 GLY 12 12 12 GLY GLY B . n B 1 13 LYS 13 13 13 LYS LYS B . n B 1 14 SER 14 14 14 SER SER B . n B 1 15 THR 15 15 15 THR THR B . n B 1 16 GLN 16 16 16 GLN GLN B . n B 1 17 ILE 17 17 17 ILE ILE B . n B 1 18 GLN 18 18 18 GLN GLN B . n B 1 19 LEU 19 19 19 LEU LEU B . n B 1 20 LEU 20 20 20 LEU LEU B . n B 1 21 ALA 21 21 21 ALA ALA B . n B 1 22 GLN 22 22 22 GLN GLN B . n B 1 23 TYR 23 23 23 TYR TYR B . n B 1 24 LEU 24 24 24 LEU LEU B . n B 1 25 GLU 25 25 25 GLU GLU B . n B 1 26 LYS 26 26 26 LYS LYS B . n B 1 27 ARG 27 27 ? ? ? B . n B 1 28 GLY 28 28 ? ? ? B . n B 1 29 LYS 29 29 ? ? ? B . n B 1 30 LYS 30 30 30 LYS LYS B . n B 1 31 VAL 31 31 31 VAL VAL B . n B 1 32 ILE 32 32 32 ILE ILE B . n B 1 33 LEU 33 33 33 LEU LEU B . n B 1 34 LYS 34 34 34 LYS LYS B . n B 1 35 ARG 35 35 35 ARG ARG B . n B 1 36 GLU 36 36 36 GLU GLU B . n B 1 37 PRO 37 37 37 PRO PRO B . n B 1 38 GLY 38 38 38 GLY GLY B . n B 1 39 GLY 39 39 39 GLY GLY B . n B 1 40 THR 40 40 40 THR THR B . n B 1 41 GLU 41 41 41 GLU GLU B . n B 1 42 THR 42 42 42 THR THR B . n B 1 43 GLY 43 43 43 GLY GLY B . n B 1 44 GLU 44 44 44 GLU GLU B . n B 1 45 LYS 45 45 45 LYS LYS B . n B 1 46 ILE 46 46 46 ILE ILE B . n B 1 47 ARG 47 47 47 ARG ARG B . n B 1 48 LYS 48 48 48 LYS LYS B . n B 1 49 ILE 49 49 49 ILE ILE B . n B 1 50 LEU 50 50 50 LEU LEU B . n B 1 51 LEU 51 51 51 LEU LEU B . n B 1 52 GLU 52 52 52 GLU GLU B . n B 1 53 GLU 53 53 53 GLU GLU B . n B 1 54 GLU 54 54 54 GLU GLU B . n B 1 55 VAL 55 55 55 VAL VAL B . n B 1 56 THR 56 56 56 THR THR B . n B 1 57 PRO 57 57 57 PRO PRO B . n B 1 58 LYS 58 58 58 LYS LYS B . n B 1 59 ALA 59 59 59 ALA ALA B . n B 1 60 GLU 60 60 60 GLU GLU B . n B 1 61 LEU 61 61 61 LEU LEU B . n B 1 62 PHE 62 62 62 PHE PHE B . n B 1 63 LEU 63 63 63 LEU LEU B . n B 1 64 PHE 64 64 64 PHE PHE B . n B 1 65 LEU 65 65 65 LEU LEU B . n B 1 66 ALA 66 66 66 ALA ALA B . n B 1 67 SER 67 67 67 SER SER B . n B 1 68 ARG 68 68 68 ARG ARG B . n B 1 69 ASN 69 69 69 ASN ASN B . n B 1 70 LEU 70 70 70 LEU LEU B . n B 1 71 LEU 71 71 71 LEU LEU B . n B 1 72 VAL 72 72 72 VAL VAL B . n B 1 73 THR 73 73 73 THR THR B . n B 1 74 GLU 74 74 74 GLU GLU B . n B 1 75 ILE 75 75 75 ILE ILE B . n B 1 76 LYS 76 76 76 LYS LYS B . n B 1 77 GLN 77 77 77 GLN GLN B . n B 1 78 TYR 78 78 78 TYR TYR B . n B 1 79 LEU 79 79 ? ? ? B . n B 1 80 SER 80 80 ? ? ? B . n B 1 81 GLU 81 81 ? ? ? B . n B 1 82 GLY 82 82 ? ? ? B . n B 1 83 TYR 83 83 83 TYR TYR B . n B 1 84 ALA 84 84 84 ALA ALA B . n B 1 85 VAL 85 85 85 VAL VAL B . n B 1 86 LEU 86 86 86 LEU LEU B . n B 1 87 LEU 87 87 87 LEU LEU B . n B 1 88 ASP 88 88 88 ASP ASP B . n B 1 89 ARG 89 89 89 ARG ARG B . n B 1 90 TYR 90 90 90 TYR TYR B . n B 1 91 THR 91 91 91 THR THR B . n B 1 92 ASP 92 92 92 ASP ASP B . n B 1 93 SER 93 93 93 SER SER B . n B 1 94 SER 94 94 94 SER SER B . n B 1 95 VAL 95 95 95 VAL VAL B . n B 1 96 ALA 96 96 96 ALA ALA B . n B 1 97 TYR 97 97 97 TYR TYR B . n B 1 98 GLN 98 98 98 GLN GLN B . n B 1 99 GLY 99 99 99 GLY GLY B . n B 1 100 PHE 100 100 100 PHE PHE B . n B 1 101 GLY 101 101 101 GLY GLY B . n B 1 102 ARG 102 102 102 ARG ARG B . n B 1 103 ASN 103 103 103 ASN ASN B . n B 1 104 LEU 104 104 104 LEU LEU B . n B 1 105 GLY 105 105 105 GLY GLY B . n B 1 106 LYS 106 106 106 LYS LYS B . n B 1 107 GLU 107 107 107 GLU GLU B . n B 1 108 ILE 108 108 108 ILE ILE B . n B 1 109 VAL 109 109 109 VAL VAL B . n B 1 110 GLU 110 110 110 GLU GLU B . n B 1 111 GLU 111 111 111 GLU GLU B . n B 1 112 LEU 112 112 112 LEU LEU B . n B 1 113 ASN 113 113 113 ASN ASN B . n B 1 114 ASP 114 114 114 ASP ASP B . n B 1 115 PHE 115 115 115 PHE PHE B . n B 1 116 ALA 116 116 116 ALA ALA B . n B 1 117 THR 117 117 117 THR THR B . n B 1 118 ASP 118 118 118 ASP ASP B . n B 1 119 GLY 119 119 119 GLY GLY B . n B 1 120 LEU 120 120 120 LEU LEU B . n B 1 121 ILE 121 121 121 ILE ILE B . n B 1 122 PRO 122 122 122 PRO PRO B . n B 1 123 ASP 123 123 123 ASP ASP B . n B 1 124 LEU 124 124 124 LEU LEU B . n B 1 125 THR 125 125 125 THR THR B . n B 1 126 PHE 126 126 126 PHE PHE B . n B 1 127 TYR 127 127 127 TYR TYR B . n B 1 128 ILE 128 128 128 ILE ILE B . n B 1 129 ASP 129 129 129 ASP ASP B . n B 1 130 VAL 130 130 130 VAL VAL B . n B 1 131 ASP 131 131 131 ASP ASP B . n B 1 132 VAL 132 132 132 VAL VAL B . n B 1 133 GLU 133 133 133 GLU GLU B . n B 1 134 THR 134 134 134 THR THR B . n B 1 135 ALA 135 135 135 ALA ALA B . n B 1 136 LEU 136 136 136 LEU LEU B . n B 1 137 LYS 137 137 137 LYS LYS B . n B 1 138 ARG 138 138 138 ARG ARG B . n B 1 139 LYS 139 139 ? ? ? B . n B 1 140 GLY 140 140 ? ? ? B . n B 1 141 GLU 141 141 ? ? ? B . n B 1 142 LEU 142 142 ? ? ? B . n B 1 143 ASN 143 143 ? ? ? B . n B 1 144 ARG 144 144 144 ARG ARG B . n B 1 145 PHE 145 145 145 PHE PHE B . n B 1 146 GLU 146 146 146 GLU GLU B . n B 1 147 LYS 147 147 147 LYS LYS B . n B 1 148 ARG 148 148 148 ARG ARG B . n B 1 149 GLU 149 149 149 GLU GLU B . n B 1 150 PHE 150 150 150 PHE PHE B . n B 1 151 LEU 151 151 151 LEU LEU B . n B 1 152 GLU 152 152 152 GLU GLU B . n B 1 153 ARG 153 153 153 ARG ARG B . n B 1 154 VAL 154 154 154 VAL VAL B . n B 1 155 ARG 155 155 155 ARG ARG B . n B 1 156 GLU 156 156 156 GLU GLU B . n B 1 157 GLY 157 157 157 GLY GLY B . n B 1 158 TYR 158 158 158 TYR TYR B . n B 1 159 LEU 159 159 159 LEU LEU B . n B 1 160 VAL 160 160 160 VAL VAL B . n B 1 161 LEU 161 161 161 LEU LEU B . n B 1 162 ALA 162 162 162 ALA ALA B . n B 1 163 ARG 163 163 163 ARG ARG B . n B 1 164 GLU 164 164 164 GLU GLU B . n B 1 165 HIS 165 165 165 HIS HIS B . n B 1 166 PRO 166 166 166 PRO PRO B . n B 1 167 GLU 167 167 167 GLU GLU B . n B 1 168 ARG 168 168 168 ARG ARG B . n B 1 169 ILE 169 169 169 ILE ILE B . n B 1 170 VAL 170 170 170 VAL VAL B . n B 1 171 VAL 171 171 171 VAL VAL B . n B 1 172 LEU 172 172 172 LEU LEU B . n B 1 173 ASP 173 173 173 ASP ASP B . n B 1 174 GLY 174 174 174 GLY GLY B . n B 1 175 LYS 175 175 175 LYS LYS B . n B 1 176 ARG 176 176 176 ARG ARG B . n B 1 177 SER 177 177 177 SER SER B . n B 1 178 ILE 178 178 178 ILE ILE B . n B 1 179 GLU 179 179 179 GLU GLU B . n B 1 180 GLU 180 180 180 GLU GLU B . n B 1 181 ILE 181 181 181 ILE ILE B . n B 1 182 HIS 182 182 182 HIS HIS B . n B 1 183 ARG 183 183 183 ARG ARG B . n B 1 184 ASP 184 184 184 ASP ASP B . n B 1 185 VAL 185 185 185 VAL VAL B . n B 1 186 VAL 186 186 186 VAL VAL B . n B 1 187 ARG 187 187 187 ARG ARG B . n B 1 188 GLU 188 188 188 GLU GLU B . n B 1 189 VAL 189 189 ? ? ? B . n B 1 190 LYS 190 190 ? ? ? B . n B 1 191 ARG 191 191 ? ? ? B . n B 1 192 ARG 192 192 ? ? ? B . n B 1 193 TRP 193 193 ? ? ? B . n B 1 194 LYS 194 194 ? ? ? B . n B 1 195 LEU 195 195 ? ? ? B . n B 1 196 ASP 196 196 ? ? ? B . n B 1 197 VAL 197 197 ? ? ? B . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'NPPSFA, National Project on Protein Structural and Functional Analyses' _pdbx_SG_project.full_name_of_center 'RIKEN Structural Genomics/Proteomics Initiative' _pdbx_SG_project.initial_of_center RSGI # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ADP 1 301 301 ADP ADP A . D 3 TYD 1 401 401 TYD TYD A . E 2 ADP 1 302 302 ADP ADP B . F 3 TYD 1 402 402 TYD TYD B . G 4 HOH 1 402 1 HOH HOH A . G 4 HOH 2 403 2 HOH HOH A . G 4 HOH 3 404 3 HOH HOH A . G 4 HOH 4 405 4 HOH HOH A . G 4 HOH 5 406 5 HOH HOH A . G 4 HOH 6 407 6 HOH HOH A . G 4 HOH 7 408 7 HOH HOH A . G 4 HOH 8 409 9 HOH HOH A . G 4 HOH 9 410 10 HOH HOH A . G 4 HOH 10 411 11 HOH HOH A . G 4 HOH 11 412 12 HOH HOH A . G 4 HOH 12 413 13 HOH HOH A . G 4 HOH 13 414 15 HOH HOH A . G 4 HOH 14 415 16 HOH HOH A . G 4 HOH 15 416 17 HOH HOH A . G 4 HOH 16 417 18 HOH HOH A . G 4 HOH 17 418 19 HOH HOH A . G 4 HOH 18 419 20 HOH HOH A . G 4 HOH 19 420 21 HOH HOH A . G 4 HOH 20 421 22 HOH HOH A . G 4 HOH 21 422 23 HOH HOH A . G 4 HOH 22 423 24 HOH HOH A . G 4 HOH 23 424 26 HOH HOH A . G 4 HOH 24 425 27 HOH HOH A . G 4 HOH 25 426 28 HOH HOH A . G 4 HOH 26 427 29 HOH HOH A . G 4 HOH 27 428 30 HOH HOH A . G 4 HOH 28 429 31 HOH HOH A . G 4 HOH 29 430 32 HOH HOH A . G 4 HOH 30 431 33 HOH HOH A . G 4 HOH 31 432 35 HOH HOH A . G 4 HOH 32 433 37 HOH HOH A . G 4 HOH 33 434 38 HOH HOH A . G 4 HOH 34 435 39 HOH HOH A . G 4 HOH 35 436 40 HOH HOH A . G 4 HOH 36 437 41 HOH HOH A . H 4 HOH 1 403 8 HOH HOH B . H 4 HOH 2 404 14 HOH HOH B . H 4 HOH 3 405 25 HOH HOH B . H 4 HOH 4 406 34 HOH HOH B . H 4 HOH 5 407 36 HOH HOH B . # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_defined_assembly ? monomeric 1 2 author_defined_assembly ? monomeric 1 3 software_defined_assembly PISA dimeric 2 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,C,D,G 2 1 B,E,F,H 3 1 A,B,C,D,E,F,G,H # _pdbx_struct_assembly_prop.biol_id 3 _pdbx_struct_assembly_prop.type 'ABSA (A^2)' _pdbx_struct_assembly_prop.value 4930 _pdbx_struct_assembly_prop.details ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2007-11-13 2 'Structure model' 1 1 2009-06-02 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description 1 1 'Structure model' repository 'Initial release' ? 2 2 'Structure model' repository Obsolete ? # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal CNS refinement 1.1 ? 1 HKL-2000 'data collection' . ? 2 DENZO 'data reduction' . ? 3 SCALEPACK 'data scaling' . ? 4 MOLREP phasing . ? 5 # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 O _pdbx_validate_close_contact.auth_asym_id_1 B _pdbx_validate_close_contact.auth_comp_id_1 GLU _pdbx_validate_close_contact.auth_seq_id_1 179 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 N _pdbx_validate_close_contact.auth_asym_id_2 B _pdbx_validate_close_contact.auth_comp_id_2 ILE _pdbx_validate_close_contact.auth_seq_id_2 181 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 1.88 # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 OE2 _pdbx_validate_symm_contact.auth_asym_id_1 B _pdbx_validate_symm_contact.auth_comp_id_1 GLU _pdbx_validate_symm_contact.auth_seq_id_1 179 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 ? _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 OE2 _pdbx_validate_symm_contact.auth_asym_id_2 B _pdbx_validate_symm_contact.auth_comp_id_2 GLU _pdbx_validate_symm_contact.auth_seq_id_2 179 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 2_445 _pdbx_validate_symm_contact.dist 1.94 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ARG A 89 ? ? 79.72 138.54 2 1 TYR A 90 ? ? -148.10 -143.91 3 1 GLU A 146 ? ? -92.12 48.40 4 1 VAL A 189 ? ? -67.97 7.02 5 1 GLU B 25 ? ? -103.74 52.13 6 1 GLU B 74 ? ? -94.16 45.16 7 1 LYS B 76 ? ? -63.00 -117.39 8 1 ARG B 89 ? ? 81.88 131.35 9 1 TYR B 90 ? ? -150.06 -145.30 10 1 GLU B 164 ? ? -140.97 -7.32 11 1 GLU B 179 ? ? -77.51 -157.17 12 1 GLU B 180 ? ? 38.34 -31.55 13 1 ARG B 187 ? ? -72.89 25.69 # _pdbx_validate_planes.id 1 _pdbx_validate_planes.PDB_model_num 1 _pdbx_validate_planes.auth_comp_id TYR _pdbx_validate_planes.auth_asym_id A _pdbx_validate_planes.auth_seq_id 158 _pdbx_validate_planes.PDB_ins_code ? _pdbx_validate_planes.label_alt_id ? _pdbx_validate_planes.rmsd 0.078 _pdbx_validate_planes.type 'SIDE CHAIN' # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A LYS 29 ? A LYS 29 2 1 Y 1 A LEU 79 ? A LEU 79 3 1 Y 1 A SER 80 ? A SER 80 4 1 Y 1 A GLU 81 ? A GLU 81 5 1 Y 1 A GLY 82 ? A GLY 82 6 1 Y 1 A GLY 140 ? A GLY 140 7 1 Y 1 A GLU 141 ? A GLU 141 8 1 Y 1 A LEU 142 ? A LEU 142 9 1 Y 1 A TRP 193 ? A TRP 193 10 1 Y 1 A LYS 194 ? A LYS 194 11 1 Y 1 A LEU 195 ? A LEU 195 12 1 Y 1 A ASP 196 ? A ASP 196 13 1 Y 1 A VAL 197 ? A VAL 197 14 1 Y 1 B MET 1 ? B MET 1 15 1 Y 1 B ARG 27 ? B ARG 27 16 1 Y 1 B GLY 28 ? B GLY 28 17 1 Y 1 B LYS 29 ? B LYS 29 18 1 Y 1 B LEU 79 ? B LEU 79 19 1 Y 1 B SER 80 ? B SER 80 20 1 Y 1 B GLU 81 ? B GLU 81 21 1 Y 1 B GLY 82 ? B GLY 82 22 1 Y 1 B LYS 139 ? B LYS 139 23 1 Y 1 B GLY 140 ? B GLY 140 24 1 Y 1 B GLU 141 ? B GLU 141 25 1 Y 1 B LEU 142 ? B LEU 142 26 1 Y 1 B ASN 143 ? B ASN 143 27 1 Y 1 B VAL 189 ? B VAL 189 28 1 Y 1 B LYS 190 ? B LYS 190 29 1 Y 1 B ARG 191 ? B ARG 191 30 1 Y 1 B ARG 192 ? B ARG 192 31 1 Y 1 B TRP 193 ? B TRP 193 32 1 Y 1 B LYS 194 ? B LYS 194 33 1 Y 1 B LEU 195 ? B LEU 195 34 1 Y 1 B ASP 196 ? B ASP 196 35 1 Y 1 B VAL 197 ? B VAL 197 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 "ADENOSINE-5'-DIPHOSPHATE" ADP 3 "THYMIDINE-5'-DIPHOSPHATE" TYD 4 water HOH #