HEADER TRANSFERASE 07-MAY-07 2Z0H OBSLTE 02-JUN-09 2Z0H 3HJN TITLE CRYSTAL STRUCTURE OF THYMIDYLATE KINASE IN COMPLEX WITH DTDP TITLE 2 AND ADP FROM THERMOTOGA MARITIMA COMPND MOL_ID: 1; COMPND 2 MOLECULE: THYMIDYLATE KINASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: DTMP KINASE; COMPND 5 EC: 2.7.4.9; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOTOGA MARITIMA MSB8; SOURCE 3 ORGANISM_TAXID: 243274; SOURCE 4 STRAIN: MSB8; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21-CODONPLUS(DE3)-RIL; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET-21A KEYWDS THYMIDYLATE KINASE, ATP-BINDING, NUCLEOTIDE BIOSYNTHESIS, KEYWDS 2 NUCLEOTIDE-BINDING, TRANSFERASE, STRUCTURAL GENOMICS, KEYWDS 3 NPPSFA, NATIONAL PROJECT ON PROTEIN STRUCTURAL AND KEYWDS 4 FUNCTIONAL ANALYSES, RIKEN STRUCTURAL GENOMICS/PROTEOMICS KEYWDS 5 INITIATIVE, RSGI EXPDTA X-RAY DIFFRACTION AUTHOR N.NAKAGAWA,S.YOSHIKAWA,M.SHIROUZU,S.YOKOYAMA,S.KURAMITSU, AUTHOR 2 RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE (RSGI) REVDAT 3 02-JUN-09 2Z0H 1 OBSLTE REVDAT 2 24-FEB-09 2Z0H 1 VERSN REVDAT 1 13-NOV-07 2Z0H 0 JRNL AUTH N.NAKAGAWA,S.YOSHIKAWA,M.SHIROUZU,S.YOKOYAMA, JRNL AUTH 2 S.KURAMITSU JRNL TITL CRYSTAL STRUCTURE OF THYMIDYLATE KINASE IN COMPLEX JRNL TITL 2 WITH DTDP AND ADP FROM THERMOTOGA MARITIMA JRNL REF TO BE PUBLISHED JRNL REFN REMARK 1 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES, PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.80 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 172179.820 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 97.2 REMARK 3 NUMBER OF REFLECTIONS : 25398 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.238 REMARK 3 FREE R VALUE : 0.300 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.800 REMARK 3 FREE R VALUE TEST SET COUNT : 2499 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.006 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.23 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 89.10 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 3453 REMARK 3 BIN R VALUE (WORKING SET) : 0.3010 REMARK 3 BIN FREE R VALUE : 0.3810 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 9.80 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 374 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.020 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2942 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 104 REMARK 3 SOLVENT ATOMS : 41 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 15.90 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 49.40 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.24000 REMARK 3 B22 (A**2) : 8.56000 REMARK 3 B33 (A**2) : -7.32000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.29 REMARK 3 ESD FROM SIGMAA (A) : 0.25 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.39 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.34 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.50 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 21.40 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.95 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 6.740 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 8.120 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 9.770 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 11.040; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.37 REMARK 3 BSOL : 70.22 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : TDP.PARAM REMARK 3 PARAMETER FILE 4 : ADP.PARAM REMARK 3 PARAMETER FILE 5 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : WATER.TOP REMARK 3 TOPOLOGY FILE 3 : TDP.TOP REMARK 3 TOPOLOGY FILE 4 : ADP.TOP REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2Z0H COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 07-AUG-07. REMARK 100 THE RCSB ID CODE IS RCSB027365. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-MAR-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL26B2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : SI DOUBLE-CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RIGAKU JUPITER 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25815 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 200 DATA REDUNDANCY : 6.701 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.05500 REMARK 200 FOR THE DATA SET : 37.3610 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.18 REMARK 200 COMPLETENESS FOR SHELL (%) : 91.4 REMARK 200 DATA REDUNDANCY IN SHELL : 5.50 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.20700 REMARK 200 FOR SHELL : 3.964 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 2CCG REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.53 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.39 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M LISULFATE, 20% PEG 3350, PH REMARK 280 6.4, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 25.79350 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 63.52500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 66.75950 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 25.79350 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 63.52500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 66.75950 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 25.79350 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 63.52500 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 66.75950 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 25.79350 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 63.52500 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 66.75950 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4930 ANGSTROM**2 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 29 REMARK 465 LEU A 79 REMARK 465 SER A 80 REMARK 465 GLU A 81 REMARK 465 GLY A 82 REMARK 465 GLY A 140 REMARK 465 GLU A 141 REMARK 465 LEU A 142 REMARK 465 TRP A 193 REMARK 465 LYS A 194 REMARK 465 LEU A 195 REMARK 465 ASP A 196 REMARK 465 VAL A 197 REMARK 465 MET B 1 REMARK 465 ARG B 27 REMARK 465 GLY B 28 REMARK 465 LYS B 29 REMARK 465 LEU B 79 REMARK 465 SER B 80 REMARK 465 GLU B 81 REMARK 465 GLY B 82 REMARK 465 LYS B 139 REMARK 465 GLY B 140 REMARK 465 GLU B 141 REMARK 465 LEU B 142 REMARK 465 ASN B 143 REMARK 465 VAL B 189 REMARK 465 LYS B 190 REMARK 465 ARG B 191 REMARK 465 ARG B 192 REMARK 465 TRP B 193 REMARK 465 LYS B 194 REMARK 465 LEU B 195 REMARK 465 ASP B 196 REMARK 465 VAL B 197 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O GLU B 179 N ILE B 181 1.88 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE2 GLU B 179 OE2 GLU B 179 2445 1.94 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 89 138.54 79.72 REMARK 500 TYR A 90 -143.91 -148.10 REMARK 500 GLU A 146 48.40 -92.12 REMARK 500 VAL A 189 7.02 -67.97 REMARK 500 GLU B 25 52.13 -103.74 REMARK 500 GLU B 74 45.16 -94.16 REMARK 500 LYS B 76 -117.39 -63.00 REMARK 500 ARG B 89 131.35 81.88 REMARK 500 TYR B 90 -145.30 -150.06 REMARK 500 GLU B 164 -7.32 -140.97 REMARK 500 GLU B 179 -157.17 -77.51 REMARK 500 GLU B 180 -31.55 38.34 REMARK 500 ARG B 187 25.69 -72.89 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 TYR A 158 0.08 SIDE_CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADP A 301 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TYD A 401 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADP B 302 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TYD B 402 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: TMA001001099.1 RELATED DB: TARGETDB DBREF 2Z0H A 1 197 UNP Q9X0I3 KTHY_THEMA 1 197 DBREF 2Z0H B 1 197 UNP Q9X0I3 KTHY_THEMA 1 197 SEQRES 1 A 197 MET PHE ILE THR PHE GLU GLY ILE ASP GLY SER GLY LYS SEQRES 2 A 197 SER THR GLN ILE GLN LEU LEU ALA GLN TYR LEU GLU LYS SEQRES 3 A 197 ARG GLY LYS LYS VAL ILE LEU LYS ARG GLU PRO GLY GLY SEQRES 4 A 197 THR GLU THR GLY GLU LYS ILE ARG LYS ILE LEU LEU GLU SEQRES 5 A 197 GLU GLU VAL THR PRO LYS ALA GLU LEU PHE LEU PHE LEU SEQRES 6 A 197 ALA SER ARG ASN LEU LEU VAL THR GLU ILE LYS GLN TYR SEQRES 7 A 197 LEU SER GLU GLY TYR ALA VAL LEU LEU ASP ARG TYR THR SEQRES 8 A 197 ASP SER SER VAL ALA TYR GLN GLY PHE GLY ARG ASN LEU SEQRES 9 A 197 GLY LYS GLU ILE VAL GLU GLU LEU ASN ASP PHE ALA THR SEQRES 10 A 197 ASP GLY LEU ILE PRO ASP LEU THR PHE TYR ILE ASP VAL SEQRES 11 A 197 ASP VAL GLU THR ALA LEU LYS ARG LYS GLY GLU LEU ASN SEQRES 12 A 197 ARG PHE GLU LYS ARG GLU PHE LEU GLU ARG VAL ARG GLU SEQRES 13 A 197 GLY TYR LEU VAL LEU ALA ARG GLU HIS PRO GLU ARG ILE SEQRES 14 A 197 VAL VAL LEU ASP GLY LYS ARG SER ILE GLU GLU ILE HIS SEQRES 15 A 197 ARG ASP VAL VAL ARG GLU VAL LYS ARG ARG TRP LYS LEU SEQRES 16 A 197 ASP VAL SEQRES 1 B 197 MET PHE ILE THR PHE GLU GLY ILE ASP GLY SER GLY LYS SEQRES 2 B 197 SER THR GLN ILE GLN LEU LEU ALA GLN TYR LEU GLU LYS SEQRES 3 B 197 ARG GLY LYS LYS VAL ILE LEU LYS ARG GLU PRO GLY GLY SEQRES 4 B 197 THR GLU THR GLY GLU LYS ILE ARG LYS ILE LEU LEU GLU SEQRES 5 B 197 GLU GLU VAL THR PRO LYS ALA GLU LEU PHE LEU PHE LEU SEQRES 6 B 197 ALA SER ARG ASN LEU LEU VAL THR GLU ILE LYS GLN TYR SEQRES 7 B 197 LEU SER GLU GLY TYR ALA VAL LEU LEU ASP ARG TYR THR SEQRES 8 B 197 ASP SER SER VAL ALA TYR GLN GLY PHE GLY ARG ASN LEU SEQRES 9 B 197 GLY LYS GLU ILE VAL GLU GLU LEU ASN ASP PHE ALA THR SEQRES 10 B 197 ASP GLY LEU ILE PRO ASP LEU THR PHE TYR ILE ASP VAL SEQRES 11 B 197 ASP VAL GLU THR ALA LEU LYS ARG LYS GLY GLU LEU ASN SEQRES 12 B 197 ARG PHE GLU LYS ARG GLU PHE LEU GLU ARG VAL ARG GLU SEQRES 13 B 197 GLY TYR LEU VAL LEU ALA ARG GLU HIS PRO GLU ARG ILE SEQRES 14 B 197 VAL VAL LEU ASP GLY LYS ARG SER ILE GLU GLU ILE HIS SEQRES 15 B 197 ARG ASP VAL VAL ARG GLU VAL LYS ARG ARG TRP LYS LEU SEQRES 16 B 197 ASP VAL HET ADP A 301 27 HET TYD A 401 25 HET ADP B 302 27 HET TYD B 402 25 HETNAM ADP ADENOSINE-5'-DIPHOSPHATE HETNAM TYD THYMIDINE-5'-DIPHOSPHATE FORMUL 3 ADP 2(C10 H15 N5 O10 P2) FORMUL 4 TYD 2(C10 H16 N2 O11 P2) FORMUL 7 HOH *41(H2 O) HELIX 1 1 GLY A 12 ARG A 27 1 16 HELIX 2 2 THR A 40 GLU A 53 1 14 HELIX 3 3 THR A 56 LYS A 76 1 21 HELIX 4 4 TYR A 90 GLN A 98 1 9 HELIX 5 5 GLY A 105 ASP A 118 1 14 HELIX 6 6 ASP A 131 LYS A 139 1 9 HELIX 7 7 LYS A 147 HIS A 165 1 19 HELIX 8 8 SER A 177 VAL A 189 1 13 HELIX 9 9 GLY B 12 TYR B 23 1 12 HELIX 10 10 THR B 40 GLU B 53 1 14 HELIX 11 11 THR B 56 GLU B 74 1 19 HELIX 12 12 TYR B 90 GLN B 98 1 9 HELIX 13 13 GLY B 105 ASP B 118 1 14 HELIX 14 14 ASP B 131 ARG B 138 1 8 HELIX 15 15 LYS B 147 ARG B 163 1 17 HELIX 16 16 SER B 177 ARG B 187 1 11 SHEET 1 A 5 VAL A 31 ARG A 35 0 SHEET 2 A 5 ALA A 84 ASP A 88 1 O LEU A 86 N ILE A 32 SHEET 3 A 5 PHE A 2 GLU A 6 1 N ILE A 3 O VAL A 85 SHEET 4 A 5 LEU A 124 ASP A 129 1 O PHE A 126 N THR A 4 SHEET 5 A 5 ILE A 169 ASP A 173 1 O VAL A 170 N THR A 125 SHEET 1 B 5 VAL B 31 ARG B 35 0 SHEET 2 B 5 ALA B 84 ASP B 88 1 O ALA B 84 N ILE B 32 SHEET 3 B 5 ILE B 3 GLU B 6 1 N ILE B 3 O LEU B 87 SHEET 4 B 5 LEU B 124 ASP B 129 1 O PHE B 126 N GLU B 6 SHEET 5 B 5 ILE B 169 ASP B 173 1 O LEU B 172 N TYR B 127 CISPEP 1 GLU A 36 PRO A 37 0 -0.53 CISPEP 2 GLU B 36 PRO B 37 0 -0.49 SITE 1 AC1 16 ASP A 9 LYS A 13 GLU A 36 PRO A 37 SITE 2 AC1 16 ARG A 47 PHE A 64 ARG A 68 ARG A 89 SITE 3 AC1 16 SER A 93 SER A 94 TYR A 97 GLN A 98 SITE 4 AC1 16 LYS A 139 PHE A 145 TYD A 401 HOH A 403 SITE 1 AC2 14 ILE A 8 GLY A 10 SER A 11 GLY A 12 SITE 2 AC2 14 LYS A 13 SER A 14 THR A 15 ARG A 138 SITE 3 AC2 14 LYS A 139 ARG A 176 ILE A 178 ADP A 301 SITE 4 AC2 14 HOH A 413 HOH A 432 SITE 1 AC3 13 ASP B 9 GLY B 10 LYS B 13 ARG B 47 SITE 2 AC3 13 PHE B 64 ARG B 68 ARG B 89 SER B 93 SITE 3 AC3 13 SER B 94 TYR B 97 GLN B 98 PHE B 145 SITE 4 AC3 13 TYD B 402 SITE 1 AC4 15 GLY B 10 SER B 11 GLY B 12 LYS B 13 SITE 2 AC4 15 SER B 14 THR B 15 GLN B 16 GLN B 22 SITE 3 AC4 15 ARG B 138 GLY B 174 ARG B 176 SER B 177 SITE 4 AC4 15 ILE B 178 ILE B 181 ADP B 302 CRYST1 51.587 127.050 133.519 90.00 90.00 90.00 I 2 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019385 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007871 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007490 0.00000