HEADER SIGNALING PROTEIN 07-MAY-07 2Z0P TITLE CRYSTAL STRUCTURE OF PH DOMAIN OF BRUTON'S TYROSINE KINASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: TYROSINE-PROTEIN KINASE BTK; COMPND 3 CHAIN: A, B, C, D; COMPND 4 FRAGMENT: PH DOMAIN; COMPND 5 SYNONYM: BRUTON TYROSINE KINASE, AGAMMAGLOBULINAEMIA TYROSINE KINASE, COMPND 6 ATK, B CELL PROGENITOR KINASE, BPK; COMPND 7 EC: 2.7.10.2; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 6 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 8 EXPRESSION_SYSTEM_CELL_LINE: SF9; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS; SOURCE 10 EXPRESSION_SYSTEM_VECTOR: PFASTBAC KEYWDS PH DOMAIN, PIP3C4, ATP-BINDING, DISEASE MUTATION, KINASE, MEMBRANE, KEYWDS 2 METAL-BINDING, NUCLEOTIDE-BINDING, NUCLEUS, PHOSPHORYLATION, SH2 KEYWDS 3 DOMAIN, SH3 DOMAIN, TRANSFERASE, TYROSINE-PROTEIN KINASE, ZINC- KEYWDS 4 FINGER, SIGNALING PROTEIN, STRUCTURAL GENOMICS, NPPSFA, NATIONAL KEYWDS 5 PROJECT ON PROTEIN STRUCTURAL AND FUNCTIONAL ANALYSES, RIKEN KEYWDS 6 STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE, RSGI EXPDTA X-RAY DIFFRACTION AUTHOR K.MURAYAMA,M.KATO-MURAYAMA,C.MISHIMA,M.SHIROUZU,S.YOKOYAMA,RIKEN AUTHOR 2 STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE (RSGI) REVDAT 4 01-NOV-23 2Z0P 1 COMPND REMARK HETNAM LINK REVDAT 3 08-JUL-15 2Z0P 1 JRNL VERSN REVDAT 2 24-FEB-09 2Z0P 1 VERSN REVDAT 1 13-MAY-08 2Z0P 0 JRNL AUTH K.MURAYAMA,M.KATO-MURAYAMA,C.MISHIMA,R.AKASAKA,M.SHIROUZU, JRNL AUTH 2 Y.FUKUI,S.YOKOYAMA JRNL TITL CRYSTAL STRUCTURE OF THE BRUTON'S TYROSINE KINASE PH DOMAIN JRNL TITL 2 WITH PHOSPHATIDYLINOSITOL JRNL REF BIOCHEM.BIOPHYS.RES.COMMUN. V. 377 23 2008 JRNL REFN ISSN 0006-291X JRNL PMID 18809383 JRNL DOI 10.1016/J.BBRC.2008.09.055 REMARK 2 REMARK 2 RESOLUTION. 2.58 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.58 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.67 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 1076225.330 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 98.1 REMARK 3 NUMBER OF REFLECTIONS : 26609 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.242 REMARK 3 FREE R VALUE : 0.300 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 1283 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.008 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.58 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.74 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 94.80 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 4049 REMARK 3 BIN R VALUE (WORKING SET) : 0.3340 REMARK 3 BIN FREE R VALUE : 0.4310 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.60 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 196 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.031 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5296 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 146 REMARK 3 SOLVENT ATOMS : 68 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 48.80 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 52.40 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -5.81000 REMARK 3 B22 (A**2) : 22.21000 REMARK 3 B33 (A**2) : -16.40000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -8.22000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.37 REMARK 3 ESD FROM SIGMAA (A) : 0.38 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.48 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.52 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.007 REMARK 3 BOND ANGLES (DEGREES) : 1.400 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 23.70 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.090 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.580 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.770 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 2.050 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 3.230 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.35 REMARK 3 BSOL : 46.82 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : ION.PARAM REMARK 3 PARAMETER FILE 4 : ITS.PARAM REMARK 3 PARAMETER FILE 5 : 4PT_3.PARAM REMARK 3 PARAMETER FILE 6 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : WATER.TOP REMARK 3 TOPOLOGY FILE 3 : ION.TOP REMARK 3 TOPOLOGY FILE 4 : ITS.TOP REMARK 3 TOPOLOGY FILE 5 : 4PT_3.TOP REMARK 3 TOPOLOGY FILE 6 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2Z0P COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 08-AUG-07. REMARK 100 THE DEPOSITION ID IS D_1000027373. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-DEC-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : AR-NW12A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26621 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.580 REMARK 200 RESOLUTION RANGE LOW (A) : 29.670 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.03700 REMARK 200 FOR THE DATA SET : 24.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.58 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.67 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.11400 REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 1BTK REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.64 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.71 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25% PEG3350, 0.2M LI2SO4, 0.1M MES, PH REMARK 280 6.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 31.24950 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4, 5, 6 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 5 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3430 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17060 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -3.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 6 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3250 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17130 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -4.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 PRO A 80 REMARK 465 ARG A 81 REMARK 465 ARG A 82 REMARK 465 GLY A 83 REMARK 465 GLU A 84 REMARK 465 GLU A 85 REMARK 465 SER A 86 REMARK 465 SER A 87 REMARK 465 GLU A 88 REMARK 465 GLU A 169 REMARK 465 ASN A 170 REMARK 465 PRO B 80 REMARK 465 ARG B 81 REMARK 465 ARG B 82 REMARK 465 GLY B 83 REMARK 465 GLU B 84 REMARK 465 GLU B 85 REMARK 465 SER B 86 REMARK 465 SER B 87 REMARK 465 LYS C 18 REMARK 465 LYS C 19 REMARK 465 THR C 20 REMARK 465 SER C 21 REMARK 465 PRO C 22 REMARK 465 PRO C 80 REMARK 465 ARG C 81 REMARK 465 ARG C 82 REMARK 465 GLY C 83 REMARK 465 GLU C 84 REMARK 465 GLU C 85 REMARK 465 SER C 86 REMARK 465 SER C 87 REMARK 465 GLU C 88 REMARK 465 ARG D 81 REMARK 465 ARG D 82 REMARK 465 GLY D 83 REMARK 465 GLU D 84 REMARK 465 GLU D 85 REMARK 465 SER D 86 REMARK 465 SER D 87 REMARK 465 GLU D 88 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 66 -171.34 -69.18 REMARK 500 VAL A 68 130.43 -39.48 REMARK 500 ASP A 149 50.15 76.70 REMARK 500 CYS A 155 -8.67 -156.44 REMARK 500 ASN A 161 31.48 -92.56 REMARK 500 LYS B 19 -74.12 5.22 REMARK 500 ASN B 72 74.58 -116.59 REMARK 500 TYR B 106 -165.41 -163.14 REMARK 500 ASP B 107 -74.56 -49.82 REMARK 500 GLU B 108 69.29 -67.06 REMARK 500 LEU B 138 92.17 -63.99 REMARK 500 PHE B 146 170.12 -54.51 REMARK 500 ASP B 149 73.61 57.27 REMARK 500 GLN C 16 34.76 91.29 REMARK 500 CYS C 63 145.54 -171.43 REMARK 500 TYR C 106 -169.16 -160.18 REMARK 500 ASP C 107 -83.25 -38.37 REMARK 500 GLU C 108 -14.43 -45.06 REMARK 500 ASP C 137 40.90 -100.85 REMARK 500 LEU C 138 76.36 -66.57 REMARK 500 ILE C 148 -96.70 -85.28 REMARK 500 CYS C 155 -14.15 -151.58 REMARK 500 SER C 156 -1.54 79.15 REMARK 500 MET C 163 160.59 -47.86 REMARK 500 CYS D 63 145.87 -172.92 REMARK 500 ASP D 137 81.43 -155.04 REMARK 500 ASP D 149 58.43 32.83 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 4PT A 501 REMARK 610 4PT C 503 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 301 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 143 ND1 REMARK 620 2 CYS A 154 SG 111.6 REMARK 620 3 CYS A 155 SG 97.2 120.1 REMARK 620 4 CYS A 165 SG 117.7 96.5 115.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 302 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 143 ND1 REMARK 620 2 CYS B 154 SG 107.6 REMARK 620 3 CYS B 155 SG 100.8 111.5 REMARK 620 4 CYS B 165 SG 119.8 101.0 116.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN C 303 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS C 143 ND1 REMARK 620 2 CYS C 154 SG 110.6 REMARK 620 3 CYS C 155 SG 102.8 117.6 REMARK 620 4 CYS C 165 SG 114.6 98.5 113.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN D 304 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS D 143 ND1 REMARK 620 2 CYS D 154 SG 111.0 REMARK 620 3 CYS D 155 SG 94.5 111.5 REMARK 620 4 CYS D 165 SG 124.3 98.8 117.3 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN C 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN D 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 4PT A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 4PT B 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 4PT C 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 4PT D 504 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HSO003004528.1 RELATED DB: TARGETDB DBREF 2Z0P A 2 170 UNP Q06187 BTK_HUMAN 2 170 DBREF 2Z0P B 2 170 UNP Q06187 BTK_HUMAN 2 170 DBREF 2Z0P C 2 170 UNP Q06187 BTK_HUMAN 2 170 DBREF 2Z0P D 2 170 UNP Q06187 BTK_HUMAN 2 170 SEQRES 1 A 169 ALA ALA VAL ILE LEU GLU SER ILE PHE LEU LYS ARG SER SEQRES 2 A 169 GLN GLN LYS LYS LYS THR SER PRO LEU ASN PHE LYS LYS SEQRES 3 A 169 ARG LEU PHE LEU LEU THR VAL HIS LYS LEU SER TYR TYR SEQRES 4 A 169 GLU TYR ASP PHE GLU ARG GLY ARG ARG GLY SER LYS LYS SEQRES 5 A 169 GLY SER ILE ASP VAL GLU LYS ILE THR CYS VAL GLU THR SEQRES 6 A 169 VAL VAL PRO GLU LYS ASN PRO PRO PRO GLU ARG GLN ILE SEQRES 7 A 169 PRO ARG ARG GLY GLU GLU SER SER GLU MET GLU GLN ILE SEQRES 8 A 169 SER ILE ILE GLU ARG PHE PRO TYR PRO PHE GLN VAL VAL SEQRES 9 A 169 TYR ASP GLU GLY PRO LEU TYR VAL PHE SER PRO THR GLU SEQRES 10 A 169 GLU LEU ARG LYS ARG TRP ILE HIS GLN LEU LYS ASN VAL SEQRES 11 A 169 ILE ARG TYR ASN SER ASP LEU VAL GLN LYS TYR HIS PRO SEQRES 12 A 169 CYS PHE TRP ILE ASP GLY GLN TYR LEU CYS CYS SER GLN SEQRES 13 A 169 THR ALA LYS ASN ALA MET GLY CYS GLN ILE LEU GLU ASN SEQRES 1 B 169 ALA ALA VAL ILE LEU GLU SER ILE PHE LEU LYS ARG SER SEQRES 2 B 169 GLN GLN LYS LYS LYS THR SER PRO LEU ASN PHE LYS LYS SEQRES 3 B 169 ARG LEU PHE LEU LEU THR VAL HIS LYS LEU SER TYR TYR SEQRES 4 B 169 GLU TYR ASP PHE GLU ARG GLY ARG ARG GLY SER LYS LYS SEQRES 5 B 169 GLY SER ILE ASP VAL GLU LYS ILE THR CYS VAL GLU THR SEQRES 6 B 169 VAL VAL PRO GLU LYS ASN PRO PRO PRO GLU ARG GLN ILE SEQRES 7 B 169 PRO ARG ARG GLY GLU GLU SER SER GLU MET GLU GLN ILE SEQRES 8 B 169 SER ILE ILE GLU ARG PHE PRO TYR PRO PHE GLN VAL VAL SEQRES 9 B 169 TYR ASP GLU GLY PRO LEU TYR VAL PHE SER PRO THR GLU SEQRES 10 B 169 GLU LEU ARG LYS ARG TRP ILE HIS GLN LEU LYS ASN VAL SEQRES 11 B 169 ILE ARG TYR ASN SER ASP LEU VAL GLN LYS TYR HIS PRO SEQRES 12 B 169 CYS PHE TRP ILE ASP GLY GLN TYR LEU CYS CYS SER GLN SEQRES 13 B 169 THR ALA LYS ASN ALA MET GLY CYS GLN ILE LEU GLU ASN SEQRES 1 C 169 ALA ALA VAL ILE LEU GLU SER ILE PHE LEU LYS ARG SER SEQRES 2 C 169 GLN GLN LYS LYS LYS THR SER PRO LEU ASN PHE LYS LYS SEQRES 3 C 169 ARG LEU PHE LEU LEU THR VAL HIS LYS LEU SER TYR TYR SEQRES 4 C 169 GLU TYR ASP PHE GLU ARG GLY ARG ARG GLY SER LYS LYS SEQRES 5 C 169 GLY SER ILE ASP VAL GLU LYS ILE THR CYS VAL GLU THR SEQRES 6 C 169 VAL VAL PRO GLU LYS ASN PRO PRO PRO GLU ARG GLN ILE SEQRES 7 C 169 PRO ARG ARG GLY GLU GLU SER SER GLU MET GLU GLN ILE SEQRES 8 C 169 SER ILE ILE GLU ARG PHE PRO TYR PRO PHE GLN VAL VAL SEQRES 9 C 169 TYR ASP GLU GLY PRO LEU TYR VAL PHE SER PRO THR GLU SEQRES 10 C 169 GLU LEU ARG LYS ARG TRP ILE HIS GLN LEU LYS ASN VAL SEQRES 11 C 169 ILE ARG TYR ASN SER ASP LEU VAL GLN LYS TYR HIS PRO SEQRES 12 C 169 CYS PHE TRP ILE ASP GLY GLN TYR LEU CYS CYS SER GLN SEQRES 13 C 169 THR ALA LYS ASN ALA MET GLY CYS GLN ILE LEU GLU ASN SEQRES 1 D 169 ALA ALA VAL ILE LEU GLU SER ILE PHE LEU LYS ARG SER SEQRES 2 D 169 GLN GLN LYS LYS LYS THR SER PRO LEU ASN PHE LYS LYS SEQRES 3 D 169 ARG LEU PHE LEU LEU THR VAL HIS LYS LEU SER TYR TYR SEQRES 4 D 169 GLU TYR ASP PHE GLU ARG GLY ARG ARG GLY SER LYS LYS SEQRES 5 D 169 GLY SER ILE ASP VAL GLU LYS ILE THR CYS VAL GLU THR SEQRES 6 D 169 VAL VAL PRO GLU LYS ASN PRO PRO PRO GLU ARG GLN ILE SEQRES 7 D 169 PRO ARG ARG GLY GLU GLU SER SER GLU MET GLU GLN ILE SEQRES 8 D 169 SER ILE ILE GLU ARG PHE PRO TYR PRO PHE GLN VAL VAL SEQRES 9 D 169 TYR ASP GLU GLY PRO LEU TYR VAL PHE SER PRO THR GLU SEQRES 10 D 169 GLU LEU ARG LYS ARG TRP ILE HIS GLN LEU LYS ASN VAL SEQRES 11 D 169 ILE ARG TYR ASN SER ASP LEU VAL GLN LYS TYR HIS PRO SEQRES 12 D 169 CYS PHE TRP ILE ASP GLY GLN TYR LEU CYS CYS SER GLN SEQRES 13 D 169 THR ALA LYS ASN ALA MET GLY CYS GLN ILE LEU GLU ASN HET ZN A 301 1 HET 4PT A 501 28 HET ZN B 302 1 HET 4PT B 502 43 HET ZN C 303 1 HET 4PT C 503 28 HET ZN D 304 1 HET 4PT D 504 43 HETNAM ZN ZINC ION HETNAM 4PT (2R)-3-{[(S)-{[(2S,3R,5S,6S)-2,6-DIHYDROXY-3,4,5- HETNAM 2 4PT TRIS(PHOSPHONOOXY)CYCLOHEXYL]OXY}(HYDROXY) HETNAM 3 4PT PHOSPHORYL]OXY}-2-(1-HYDROXY BUTOXY)PROPYL BUTYRATE HETSYN 4PT DIC4-PHOSPHATIDYLINOSITOL(3,4,5)TRISPHOSPHATE FORMUL 5 ZN 4(ZN 2+) FORMUL 6 4PT 4(C17 H36 O22 P4) FORMUL 13 HOH *68(H2 O) HELIX 1 1 PRO A 74 GLN A 78 5 5 HELIX 2 2 MET A 89 ILE A 94 1 6 HELIX 3 3 THR A 117 ARG A 133 1 17 HELIX 4 4 GLU B 59 ILE B 61 5 3 HELIX 5 5 PRO B 74 GLN B 78 5 5 HELIX 6 6 ILE B 92 GLU B 96 5 5 HELIX 7 7 THR B 117 ARG B 133 1 17 HELIX 8 8 PRO C 74 GLN C 78 5 5 HELIX 9 9 MET C 89 ILE C 94 1 6 HELIX 10 10 THR C 117 ILE C 132 1 16 HELIX 11 11 ARG C 133 ASN C 135 5 3 HELIX 12 12 GLU D 59 ILE D 61 5 3 HELIX 13 13 PRO D 74 GLN D 78 5 5 HELIX 14 14 MET D 89 ILE D 94 1 6 HELIX 15 15 THR D 117 ARG D 133 1 17 SHEET 1 A 7 ARG A 48 ASP A 57 0 SHEET 2 A 7 LYS A 36 ASP A 43 -1 N GLU A 41 O GLY A 50 SHEET 3 A 7 PHE A 25 LEU A 32 -1 N LEU A 29 O TYR A 40 SHEET 4 A 7 LEU A 6 ARG A 13 -1 N SER A 8 O PHE A 30 SHEET 5 A 7 PRO A 110 SER A 115 -1 O PHE A 114 N LEU A 11 SHEET 6 A 7 TYR A 100 TYR A 106 -1 N PHE A 102 O VAL A 113 SHEET 7 A 7 ILE A 61 THR A 66 -1 N GLU A 65 O GLN A 103 SHEET 1 B 7 ARG B 48 ASP B 57 0 SHEET 2 B 7 LYS B 36 ASP B 43 -1 N GLU B 41 O SER B 51 SHEET 3 B 7 PHE B 25 LEU B 32 -1 N LEU B 31 O SER B 38 SHEET 4 B 7 LEU B 6 ARG B 13 -1 N SER B 8 O PHE B 30 SHEET 5 B 7 PRO B 110 SER B 115 -1 O PHE B 114 N LEU B 11 SHEET 6 B 7 TYR B 100 VAL B 105 -1 N PHE B 102 O VAL B 113 SHEET 7 B 7 CYS B 63 THR B 66 -1 N GLU B 65 O GLN B 103 SHEET 1 C 2 LYS B 141 TYR B 142 0 SHEET 2 C 2 GLN B 166 ILE B 167 -1 O GLN B 166 N TYR B 142 SHEET 1 D 7 ARG C 48 ASP C 57 0 SHEET 2 D 7 LYS C 36 ASP C 43 -1 N LEU C 37 O ILE C 56 SHEET 3 D 7 PHE C 25 LEU C 32 -1 N LEU C 29 O TYR C 40 SHEET 4 D 7 LEU C 6 ARG C 13 -1 N SER C 8 O PHE C 30 SHEET 5 D 7 GLY C 109 SER C 115 -1 O PHE C 114 N LEU C 11 SHEET 6 D 7 TYR C 100 TYR C 106 -1 N PHE C 102 O VAL C 113 SHEET 7 D 7 ILE C 61 THR C 66 -1 N GLU C 65 O GLN C 103 SHEET 1 E 2 LYS C 141 TYR C 142 0 SHEET 2 E 2 GLN C 166 ILE C 167 -1 O GLN C 166 N TYR C 142 SHEET 1 F 7 ARG D 48 ASP D 57 0 SHEET 2 F 7 LYS D 36 ASP D 43 -1 N GLU D 41 O GLY D 50 SHEET 3 F 7 PHE D 25 LEU D 32 -1 N LEU D 29 O TYR D 40 SHEET 4 F 7 LEU D 6 ARG D 13 -1 N SER D 8 O PHE D 30 SHEET 5 F 7 PRO D 110 SER D 115 -1 O PHE D 114 N LEU D 11 SHEET 6 F 7 TYR D 100 VAL D 105 -1 N TYR D 100 O SER D 115 SHEET 7 F 7 CYS D 63 THR D 66 -1 N GLU D 65 O GLN D 103 SHEET 1 G 2 LYS D 141 TYR D 142 0 SHEET 2 G 2 GLN D 166 ILE D 167 -1 O GLN D 166 N TYR D 142 SHEET 1 H 2 TRP D 147 ILE D 148 0 SHEET 2 H 2 GLN D 151 TYR D 152 -1 O GLN D 151 N ILE D 148 LINK ND1 HIS A 143 ZN ZN A 301 1555 1555 2.08 LINK SG CYS A 154 ZN ZN A 301 1555 1555 2.29 LINK SG CYS A 155 ZN ZN A 301 1555 1555 2.45 LINK SG CYS A 165 ZN ZN A 301 1555 1555 1.97 LINK ND1 HIS B 143 ZN ZN B 302 1555 1555 2.01 LINK SG CYS B 154 ZN ZN B 302 1555 1555 2.26 LINK SG CYS B 155 ZN ZN B 302 1555 1555 2.51 LINK SG CYS B 165 ZN ZN B 302 1555 1555 1.93 LINK ND1 HIS C 143 ZN ZN C 303 1555 1555 2.00 LINK SG CYS C 154 ZN ZN C 303 1555 1555 2.16 LINK SG CYS C 155 ZN ZN C 303 1555 1555 2.31 LINK SG CYS C 165 ZN ZN C 303 1555 1555 2.08 LINK ND1 HIS D 143 ZN ZN D 304 1555 1555 2.09 LINK SG CYS D 154 ZN ZN D 304 1555 1555 2.25 LINK SG CYS D 155 ZN ZN D 304 1555 1555 2.29 LINK SG CYS D 165 ZN ZN D 304 1555 1555 2.19 SITE 1 AC1 4 HIS A 143 CYS A 154 CYS A 155 CYS A 165 SITE 1 AC2 4 HIS B 143 CYS B 154 CYS B 155 CYS B 165 SITE 1 AC3 5 HIS C 143 TYR C 152 CYS C 154 CYS C 155 SITE 2 AC3 5 CYS C 165 SITE 1 AC4 4 HIS D 143 CYS D 154 CYS D 155 CYS D 165 SITE 1 AC5 13 LYS A 12 SER A 14 GLN A 15 GLN A 16 SITE 2 AC5 13 LYS A 17 LYS A 18 SER A 21 PRO A 22 SITE 3 AC5 13 ASN A 24 LYS A 26 ARG A 28 TYR A 39 SITE 4 AC5 13 LYS A 53 SITE 1 AC6 13 LYS B 12 SER B 14 GLN B 15 GLN B 16 SITE 2 AC6 13 LYS B 17 LYS B 18 THR B 20 SER B 21 SITE 3 AC6 13 PRO B 22 ASN B 24 ARG B 28 TYR B 39 SITE 4 AC6 13 LYS B 53 SITE 1 AC7 9 LYS C 12 SER C 14 GLN C 15 GLN C 16 SITE 2 AC7 9 LYS C 17 ASN C 24 ARG C 28 TYR C 39 SITE 3 AC7 9 LYS C 53 SITE 1 AC8 11 LYS D 12 SER D 14 GLN D 15 LYS D 17 SITE 2 AC8 11 LYS D 18 SER D 21 PRO D 22 ASN D 24 SITE 3 AC8 11 ARG D 28 TYR D 39 LYS D 53 CRYST1 59.417 62.499 117.064 90.00 94.33 90.00 P 1 21 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016830 0.000000 0.001274 0.00000 SCALE2 0.000000 0.016000 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008567 0.00000