HEADER HYDROLASE 08-MAY-07 2Z1A TITLE CRYSTAL STRUCTURE OF 5'-NUCLEOTIDASE PRECURSOR FROM THERMUS TITLE 2 THERMOPHILUS HB8 COMPND MOL_ID: 1; COMPND 2 MOLECULE: 5'-NUCLEOTIDASE; COMPND 3 CHAIN: A; COMPND 4 EC: 3.1.3.5; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMUS THERMOPHILUS; SOURCE 3 ORGANISM_TAXID: 300852; SOURCE 4 STRAIN: HB8; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: ROSETTA(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET-11A KEYWDS NUCLEOTIDASE, METAL-BINDING, NUCLEOTIDE-BINDING, HYDROLASE, KEYWDS 2 STRUCTURAL GENOMICS, NPPSFA, NATIONAL PROJECT ON PROTEIN STRUCTURAL KEYWDS 3 AND FUNCTIONAL ANALYSES, RIKEN STRUCTURAL GENOMICS/PROTEOMICS KEYWDS 4 INITIATIVE, RSGI EXPDTA X-RAY DIFFRACTION AUTHOR N.NAKAGAWA,S.KISHISHITA,S.YOKOYAMA,S.KURAMITSU,RIKEN STRUCTURAL AUTHOR 2 GENOMICS/PROTEOMICS INITIATIVE (RSGI) REVDAT 4 01-NOV-23 2Z1A 1 REMARK LINK REVDAT 3 13-JUL-11 2Z1A 1 VERSN REVDAT 2 24-FEB-09 2Z1A 1 VERSN REVDAT 1 13-NOV-07 2Z1A 0 JRNL AUTH N.NAKAKAGA,S.KISHISHITA,S.YOKOYAMA,S.KURAMITSU JRNL TITL CRYSTAL STRUCTURE OF 5'-NUCLEOTIDASE PRECURSOR FROM THERMUS JRNL TITL 2 THERMOPHILUS HB8 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.40 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 81097.710 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 97.6 REMARK 3 NUMBER OF REFLECTIONS : 49277 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.179 REMARK 3 FREE R VALUE : 0.209 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2474 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.004 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.75 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.86 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 91.40 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 7268 REMARK 3 BIN R VALUE (WORKING SET) : 0.2320 REMARK 3 BIN FREE R VALUE : 0.2570 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.20 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 399 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.013 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3910 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 24 REMARK 3 SOLVENT ATOMS : 587 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 11.40 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 15.70 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.90000 REMARK 3 B22 (A**2) : 3.57000 REMARK 3 B33 (A**2) : -1.66000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.41000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.18 REMARK 3 ESD FROM SIGMAA (A) : 0.13 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.21 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.15 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.005 REMARK 3 BOND ANGLES (DEGREES) : 1.400 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 23.90 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.980 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.35 REMARK 3 BSOL : 49.02 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : TMP.PARAM REMARK 3 PARAMETER FILE 4 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : WATER.TOP REMARK 3 TOPOLOGY FILE 3 : TMP.TOP REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2Z1A COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 04-SEP-07. REMARK 100 THE DEPOSITION ID IS D_1000027394. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-MAY-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL45XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : SI II REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RIGAKU JUPITER 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 50398 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.750 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 4.130 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.05200 REMARK 200 FOR THE DATA SET : 19.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.81 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.6 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.27400 REMARK 200 FOR SHELL : 2.680 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 1HO5 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.53 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.10 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M K-ACETATE, 20% PEG3350, PH 7.8, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 28.91600 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 LYS A 2 REMARK 465 ARG A 3 REMARK 465 ARG A 4 REMARK 465 GLU A 5 REMARK 465 VAL A 6 REMARK 465 LEU A 7 REMARK 465 GLN A 8 REMARK 465 ALA A 9 REMARK 465 GLY A 10 REMARK 465 MET A 11 REMARK 465 ALA A 12 REMARK 465 LEU A 13 REMARK 465 GLY A 14 REMARK 465 GLY A 15 REMARK 465 LEU A 16 REMARK 465 ALA A 17 REMARK 465 GLY A 18 REMARK 465 LEU A 19 REMARK 465 GLY A 20 REMARK 465 ARG A 21 REMARK 465 ALA A 22 REMARK 465 LEU A 23 REMARK 465 ALA A 24 REMARK 465 GLN A 25 REMARK 465 GLY A 26 REMARK 465 GLY A 27 REMARK 465 LYS A 535 REMARK 465 GLY A 536 REMARK 465 GLU A 537 REMARK 465 ARG A 538 REMARK 465 PRO A 539 REMARK 465 ALA A 540 REMARK 465 TYR A 541 REMARK 465 PHE A 542 REMARK 465 ALA A 543 REMARK 465 TYR A 544 REMARK 465 ARG A 545 REMARK 465 VAL A 546 REMARK 465 PRO A 547 REMARK 465 GLY A 548 REMARK 465 LEU A 549 REMARK 465 VAL A 550 REMARK 465 GLY A 551 REMARK 465 VAL A 552 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 40 17.78 58.55 REMARK 500 ARG A 72 -50.03 -120.61 REMARK 500 GLN A 86 112.44 66.84 REMARK 500 SER A 138 107.28 -177.99 REMARK 500 HIS A 238 -38.31 71.01 REMARK 500 TRP A 275 -111.65 56.34 REMARK 500 ALA A 309 159.08 178.63 REMARK 500 LYS A 518 -59.04 70.49 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A5647 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 37 OD1 REMARK 620 2 HIS A 39 NE2 100.8 REMARK 620 3 ASP A 83 OD2 81.1 91.7 REMARK 620 4 PO4 A5646 O2 171.5 87.7 97.8 REMARK 620 5 HOH A6559 O 82.6 172.3 81.9 88.9 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A5648 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 83 OD2 REMARK 620 2 ASN A 115 OD1 100.8 REMARK 620 3 HIS A 238 ND1 164.4 90.7 REMARK 620 4 PO4 A5646 O1 94.7 84.9 96.8 REMARK 620 5 HOH A6559 O 81.2 172.5 88.9 87.7 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 5646 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 5647 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 5648 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE THM A 6510 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: TTK003000132.1 RELATED DB: TARGETDB DBREF 2Z1A A 1 552 UNP Q5SIP1 Q5SIP1_THET8 1 552 SEQRES 1 A 552 MET LYS ARG ARG GLU VAL LEU GLN ALA GLY MET ALA LEU SEQRES 2 A 552 GLY GLY LEU ALA GLY LEU GLY ARG ALA LEU ALA GLN GLY SEQRES 3 A 552 GLY PHE THR LEU THR LEU VAL HIS THR ASN ASP THR HIS SEQRES 4 A 552 ALA HIS LEU GLU PRO VAL GLU LEU THR LEU SER GLY GLU SEQRES 5 A 552 LYS THR PRO VAL GLY GLY VAL ALA ARG ARG VAL ALA LEU SEQRES 6 A 552 PHE ASP ARG VAL TRP ALA ARG ALA LYS ASN PRO LEU PHE SEQRES 7 A 552 LEU ASP ALA GLY ASP VAL PHE GLN GLY THR LEU TYR PHE SEQRES 8 A 552 ASN GLN TYR ARG GLY LEU ALA ASP ARG TYR PHE MET HIS SEQRES 9 A 552 ARG LEU ARG TYR ARG ALA MET ALA LEU GLY ASN HIS GLU SEQRES 10 A 552 PHE ASP LEU GLY PRO GLY PRO LEU ALA ASP PHE LEU LYS SEQRES 11 A 552 GLY ALA ARG PHE LYS VAL VAL SER ALA ASN VAL ASP ALA SEQRES 12 A 552 SER ARG GLU PRO ARG LEU LYS GLY LEU PHE ALA PRO TYR SEQRES 13 A 552 ALA VAL VAL VAL VAL GLY GLY GLU ARG VAL GLY ILE ILE SEQRES 14 A 552 GLY LEU THR THR PRO ASP THR ARG GLU ILE SER ASN PRO SEQRES 15 A 552 GLY PRO THR VAL ALA PHE LEU ASP PRO TYR GLU SER ALA SEQRES 16 A 552 GLN LYS ALA VAL TYR GLU LEU LEU ALA LYS GLY VAL ASN SEQRES 17 A 552 LYS ILE VAL VAL LEU SER HIS LEU GLY TYR GLY GLU ASP SEQRES 18 A 552 LEU LYS LEU ALA ARG ARG LEU VAL GLY VAL GLN VAL ILE SEQRES 19 A 552 VAL GLY GLY HIS SER HIS THR LEU LEU GLY SER PHE PRO SEQRES 20 A 552 HIS LYS GLU LEU SER PRO ALA GLY PRO TYR PRO THR VAL SEQRES 21 A 552 VAL LYS ASN PRO GLU GLY LYS ASP VAL LEU VAL VAL GLN SEQRES 22 A 552 ALA TRP GLU TRP GLY LYS VAL VAL GLY LEU LEU GLU VAL SEQRES 23 A 552 THR PHE ASP ALA LYS GLY GLU LEU LEU ALA TYR LYS GLY SEQRES 24 A 552 GLU ALA LEU LEU MET THR PRO GLU ALA ALA PRO GLU ASP SEQRES 25 A 552 PHE PHE ALA LYS GLU ALA LEU LEU ALA TYR ALA GLN PRO SEQRES 26 A 552 VAL MET ALA LEU MET GLN GLN VAL ILE ALA GLU ALA LYS SEQRES 27 A 552 VAL ASP LEU VAL GLY GLU ARG ALA VAL VAL ARG ARG ARG SEQRES 28 A 552 GLU SER ASN LEU GLY ASN LEU ILE THR ASP GLY MET LEU SEQRES 29 A 552 TRP LYS THR ARG ASN ALA GLY THR GLN ILE ALA LEU GLN SEQRES 30 A 552 ASN GLY GLY GLY ILE ARG ALA SER ILE PRO LYS GLY PRO SEQRES 31 A 552 ILE THR VAL GLY LYS VAL TYR GLU VAL LEU PRO PHE GLY SEQRES 32 A 552 ASN THR LEU VAL VAL MET ASP LEU LYS GLY LYS GLU ILE SEQRES 33 A 552 LEU ALA ALA LEU GLU ASN GLY VAL SER GLN TRP GLU ASN SEQRES 34 A 552 THR ALA GLY ARG PHE LEU GLN VAL SER GLY LEU ARG TYR SEQRES 35 A 552 ALA PHE ASP LEU SER ARG PRO ALA GLY SER ARG VAL VAL SEQRES 36 A 552 ARG VAL GLU VAL LYS THR GLU LYS GLY TYR VAL PRO LEU SEQRES 37 A 552 ASP LEU GLU ALA THR TYR ARG VAL VAL VAL ASN ASN PHE SEQRES 38 A 552 ILE ALA ASN GLY GLY ASP GLY PHE THR VAL LEU LYS GLU SEQRES 39 A 552 ALA GLN GLY TYR ARG VAL ASP THR GLY PHE SER ASP ALA SEQRES 40 A 552 GLU SER PHE MET ASP TYR LEU LYS GLU LEU LYS VAL VAL SEQRES 41 A 552 GLU ALA GLY LEU GLU GLY ARG ILE GLU VAL LEU ASN GLU SEQRES 42 A 552 PRO LYS GLY GLU ARG PRO ALA TYR PHE ALA TYR ARG VAL SEQRES 43 A 552 PRO GLY LEU VAL GLY VAL HET PO4 A5646 5 HET ZN A5647 1 HET ZN A5648 1 HET THM A6510 17 HETNAM PO4 PHOSPHATE ION HETNAM ZN ZINC ION HETNAM THM THYMIDINE HETSYN THM DEOXYTHYMIDINE; 2'-DEOXYTHYMIDINE FORMUL 2 PO4 O4 P 3- FORMUL 3 ZN 2(ZN 2+) FORMUL 5 THM C10 H14 N2 O5 FORMUL 6 HOH *587(H2 O) HELIX 1 1 GLY A 58 ALA A 73 1 16 HELIX 2 2 THR A 88 ARG A 95 1 8 HELIX 3 3 GLY A 96 LEU A 106 1 11 HELIX 4 4 GLY A 114 ASP A 119 5 6 HELIX 5 5 GLY A 121 LYS A 130 1 10 HELIX 6 6 GLU A 146 LYS A 150 5 5 HELIX 7 7 ASP A 175 SER A 180 1 6 HELIX 8 8 ASP A 190 LYS A 205 1 16 HELIX 9 9 GLY A 217 ARG A 226 1 10 HELIX 10 10 ASP A 312 GLN A 324 1 13 HELIX 11 11 VAL A 326 GLN A 332 1 7 HELIX 12 12 GLU A 344 ARG A 349 1 6 HELIX 13 13 SER A 353 THR A 367 1 15 HELIX 14 14 ARG A 368 GLY A 371 5 4 HELIX 15 15 GLY A 380 ILE A 382 5 3 HELIX 16 16 VAL A 393 LEU A 400 1 8 HELIX 17 17 GLY A 413 SER A 425 1 13 HELIX 18 18 GLN A 426 THR A 430 5 5 HELIX 19 19 ASN A 480 ASN A 484 1 5 HELIX 20 20 GLY A 485 GLY A 488 5 4 HELIX 21 21 PHE A 489 GLU A 494 1 6 HELIX 22 22 ASP A 506 LYS A 518 1 13 SHEET 1 A 6 LYS A 135 VAL A 137 0 SHEET 2 A 6 ALA A 110 ALA A 112 1 N MET A 111 O VAL A 137 SHEET 3 A 6 PRO A 76 ASP A 80 1 N ASP A 80 O ALA A 112 SHEET 4 A 6 THR A 29 THR A 35 1 N VAL A 33 O LEU A 79 SHEET 5 A 6 VAL A 280 PHE A 288 -1 O VAL A 286 N LEU A 30 SHEET 6 A 6 LEU A 294 LEU A 303 -1 O LEU A 295 N THR A 287 SHEET 1 B 2 VAL A 45 THR A 48 0 SHEET 2 B 2 LYS A 53 VAL A 56 -1 O THR A 54 N LEU A 47 SHEET 1 C 2 VAL A 141 ASP A 142 0 SHEET 2 C 2 ALA A 187 PHE A 188 -1 O ALA A 187 N ASP A 142 SHEET 1 D 6 TYR A 156 VAL A 161 0 SHEET 2 D 6 GLU A 164 THR A 172 -1 O GLU A 164 N VAL A 161 SHEET 3 D 6 ILE A 210 HIS A 215 1 O LEU A 213 N ILE A 169 SHEET 4 D 6 VAL A 233 GLY A 236 1 O VAL A 235 N VAL A 212 SHEET 5 D 6 ASP A 268 GLN A 273 1 O LEU A 270 N ILE A 234 SHEET 6 D 6 THR A 259 LYS A 262 -1 N THR A 259 O VAL A 271 SHEET 1 E 3 GLY A 389 THR A 392 0 SHEET 2 E 3 VAL A 333 ALA A 337 -1 N ALA A 337 O GLY A 389 SHEET 3 E 3 VAL A 519 VAL A 520 1 O VAL A 520 N GLU A 336 SHEET 1 F 5 LEU A 435 SER A 438 0 SHEET 2 F 5 ILE A 374 ASN A 378 -1 N GLN A 377 O GLN A 436 SHEET 3 F 5 THR A 473 ASN A 479 1 O VAL A 477 N ILE A 374 SHEET 4 F 5 THR A 405 LYS A 412 -1 N VAL A 407 O VAL A 478 SHEET 5 F 5 ARG A 499 SER A 505 -1 O VAL A 500 N VAL A 408 SHEET 1 G 4 GLY A 464 PRO A 467 0 SHEET 2 G 4 VAL A 454 THR A 461 -1 N VAL A 459 O VAL A 466 SHEET 3 G 4 LEU A 440 ASP A 445 -1 N ARG A 441 O GLU A 458 SHEET 4 G 4 ILE A 528 LEU A 531 1 O LEU A 531 N PHE A 444 LINK OD1 ASP A 37 ZN ZN A5647 1555 1555 2.15 LINK NE2 HIS A 39 ZN ZN A5647 1555 1555 2.20 LINK OD2 ASP A 83 ZN ZN A5647 1555 1555 2.33 LINK OD2 ASP A 83 ZN ZN A5648 1555 1555 2.27 LINK OD1 ASN A 115 ZN ZN A5648 1555 1555 2.14 LINK ND1 HIS A 238 ZN ZN A5648 1555 1555 2.30 LINK O2 PO4 A5646 ZN ZN A5647 1555 1555 2.32 LINK O1 PO4 A5646 ZN ZN A5648 1555 1555 2.26 LINK ZN ZN A5647 O HOH A6559 1555 1555 2.08 LINK ZN ZN A5648 O HOH A6559 1555 1555 2.18 CISPEP 1 TYR A 257 PRO A 258 0 -0.05 SITE 1 AC1 14 HIS A 39 ASP A 83 ASN A 115 HIS A 116 SITE 2 AC1 14 HIS A 238 HIS A 240 ARG A 345 ARG A 349 SITE 3 AC1 14 ARG A 383 ZN A5647 ZN A5648 THM A6510 SITE 4 AC1 14 HOH A6559 HOH A7097 SITE 1 AC2 7 ASP A 37 HIS A 39 ASP A 83 HIS A 240 SITE 2 AC2 7 PO4 A5646 ZN A5648 HOH A6559 SITE 1 AC3 7 ASP A 83 ASN A 115 HIS A 215 HIS A 238 SITE 2 AC3 7 PO4 A5646 ZN A5647 HOH A6559 SITE 1 AC4 16 ASN A 115 HIS A 116 ASP A 119 ILE A 179 SITE 2 AC4 16 ASN A 181 ASN A 378 GLY A 380 GLY A 381 SITE 3 AC4 16 PHE A 402 ASN A 404 GLY A 432 PHE A 481 SITE 4 AC4 16 ASP A 487 PO4 A5646 HOH A6623 HOH A6658 CRYST1 55.426 57.832 81.960 90.00 105.95 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018042 0.000000 0.005158 0.00000 SCALE2 0.000000 0.017291 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012690 0.00000