HEADER LYASE 15-MAY-07 2Z1U TITLE CRYSTAL STRUCTURE OF HYDROGENASE MATURATION PROTEIN HYPE IN COMPLEX TITLE 2 WITH ATP COMPND MOL_ID: 1; COMPND 2 MOLECULE: HYDROGENASE EXPRESSION/FORMATION PROTEIN HYPE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DESULFOVIBRIO VULGARIS SUBSP. VULGARIS; SOURCE 3 ORGANISM_TAXID: 882; SOURCE 4 STRAIN: HILDENBOROUGH; SOURCE 5 GENE: HYPE; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PPROEXHTB KEYWDS ALPHA-BETA FOLD, BETA BARREL, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR Y.SHOMURA,Y.HIGUCHI REVDAT 4 13-MAR-24 2Z1U 1 REMARK SEQADV LINK REVDAT 3 13-JUL-11 2Z1U 1 VERSN REVDAT 2 24-FEB-09 2Z1U 1 VERSN REVDAT 1 09-OCT-07 2Z1U 0 JRNL AUTH Y.SHOMURA,H.KOMORI,N.MIYABE,M.TOMIYAMA,N.SHIBATA,Y.HIGUCHI JRNL TITL CRYSTAL STRUCTURES OF HYDROGENASE MATURATION PROTEIN HYPE IN JRNL TITL 2 THE APO AND ATP-BOUND FORMS JRNL REF J.MOL.BIOL. V. 372 1045 2007 JRNL REFN ISSN 0022-2836 JRNL PMID 17706667 JRNL DOI 10.1016/J.JMB.2007.07.023 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 33.30 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 31944 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.201 REMARK 3 R VALUE (WORKING SET) : 0.200 REMARK 3 FREE R VALUE : 0.228 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1707 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2317 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.55 REMARK 3 BIN R VALUE (WORKING SET) : 0.2460 REMARK 3 BIN FREE R VALUE SET COUNT : 129 REMARK 3 BIN FREE R VALUE : 0.3090 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2475 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 33 REMARK 3 SOLVENT ATOMS : 182 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 37.50 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 53.48 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.78000 REMARK 3 B22 (A**2) : 1.78000 REMARK 3 B33 (A**2) : -2.67000 REMARK 3 B12 (A**2) : 0.89000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.145 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.135 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.112 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.096 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.956 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.943 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2543 ; 0.011 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3453 ; 1.541 ; 2.003 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 333 ; 5.846 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 101 ;37.752 ;23.267 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 416 ;19.013 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 23 ;19.630 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 406 ; 0.121 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1895 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1224 ; 0.215 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1701 ; 0.298 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 175 ; 0.134 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 2 ; 0.074 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 66 ; 0.166 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 21 ; 0.116 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1697 ; 0.669 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2635 ; 1.131 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 929 ; 1.971 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 818 ; 3.037 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 5 A 341 REMARK 3 ORIGIN FOR THE GROUP (A): 16.0329 20.3031 14.9515 REMARK 3 T TENSOR REMARK 3 T11: -0.1300 T22: -0.2763 REMARK 3 T33: -0.2926 T12: 0.2154 REMARK 3 T13: -0.0451 T23: -0.0234 REMARK 3 L TENSOR REMARK 3 L11: 1.7962 L22: 1.0253 REMARK 3 L33: 4.4137 L12: -0.5398 REMARK 3 L13: 1.3620 L23: -1.0146 REMARK 3 S TENSOR REMARK 3 S11: -0.2063 S12: -0.0766 S13: 0.0257 REMARK 3 S21: 0.5206 S22: 0.3040 S23: -0.0206 REMARK 3 S31: 0.0889 S32: -0.2192 S33: -0.0978 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2Z1U COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 18-MAY-07. REMARK 100 THE DEPOSITION ID IS D_1000027414. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-JUL-06 REMARK 200 TEMPERATURE (KELVIN) : 90 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL44B2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : SI 111 REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 33715 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 33.300 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 4.700 REMARK 200 R MERGE (I) : 0.06500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.07 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.40 REMARK 200 R MERGE FOR SHELL (I) : 0.42800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 63.60 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.38 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M MES, 25% MPD, 5MM MGCL2, 2MM ATP, REMARK 280 PH6.0, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 297K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 61.40600 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 122.81200 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 122.81200 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 61.40600 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 7980 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22450 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -68.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -1 REMARK 465 ALA A 0 REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 GLY A 3 REMARK 465 GLU A 4 REMARK 465 GLY A 334 REMARK 465 GLU A 335 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 30 91.33 13.67 REMARK 500 LYS A 138 -61.14 70.96 REMARK 500 MET A 139 128.55 -172.39 REMARK 500 THR A 220 -115.05 -89.04 REMARK 500 HIS A 293 15.28 59.73 REMARK 500 ALA A 311 -21.76 99.39 REMARK 500 LEU A 332 -145.83 -44.62 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 THR A 46 GLY A 47 144.68 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 THR A 226 -11.26 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 344 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 39 OD2 REMARK 620 2 ASP A 79 OD2 87.0 REMARK 620 3 ASP A 218 OD1 94.8 99.4 REMARK 620 4 ASP A 218 OD2 140.1 83.8 49.1 REMARK 620 5 ATP A 342 O2B 85.4 100.3 160.3 134.5 REMARK 620 6 HOH A 434 O 90.8 172.9 87.5 102.2 72.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 343 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 54 OD1 REMARK 620 2 ASP A 127 OD1 85.6 REMARK 620 3 ATP A 342 O2A 175.8 90.6 REMARK 620 4 ATP A 342 O1G 92.7 93.3 89.0 REMARK 620 5 ATP A 342 O1B 93.5 177.5 90.4 89.0 REMARK 620 6 HOH A 453 O 90.9 93.4 87.7 172.5 84.3 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 343 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 344 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ATP A 342 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2Z1T RELATED DB: PDB DBREF 2Z1U A 1 341 UNP Q72F88 Q72F88_DESVH 1 341 SEQADV 2Z1U GLY A -1 UNP Q72F88 EXPRESSION TAG SEQADV 2Z1U ALA A 0 UNP Q72F88 EXPRESSION TAG SEQRES 1 A 343 GLY ALA MET SER GLY GLU THR LEU LEU LEU ASP TYR GLY SEQRES 2 A 343 SER GLY GLY ARG ALA SER HIS ARG LEU ILE SER ASP LEU SEQRES 3 A 343 PHE LEU ARG HIS PHE ASP ASN PRO ILE LEU GLY THR LEU SEQRES 4 A 343 ASN ASP ALA ALA ARG LEU ASP LEU THR GLY PRO LEU ALA SEQRES 5 A 343 MET SER THR ASP SER TYR THR VAL ASP PRO ILE PHE PHE SEQRES 6 A 343 PRO GLY GLY ASP ILE GLY THR LEU ALA VAL HIS GLY THR SEQRES 7 A 343 VAL ASN ASP VAL SER MET LEU GLY ALA ARG PRO ARG TYR SEQRES 8 A 343 LEU SER CYS GLY PHE ILE LEU GLU GLU GLY LEU ASP MET SEQRES 9 A 343 ASP ILE LEU GLU ARG VAL VAL ALA SER MET GLY LYS ALA SEQRES 10 A 343 ALA ARG GLU ALA GLY VAL PHE ILE VAL THR GLY ASP THR SEQRES 11 A 343 LYS VAL VAL PRO ARG GLY ALA CYS ASP LYS MET PHE ILE SEQRES 12 A 343 ASN THR THR GLY ILE GLY GLU ILE LEU VAL ASP PRO ALA SEQRES 13 A 343 PRO SER GLY ASP ARG ALA ARG PRO GLY ASP ALA ILE LEU SEQRES 14 A 343 ILE SER GLY SER MET GLY ASP HIS GLY LEU THR ILE LEU SEQRES 15 A 343 SER GLN ARG GLN GLY LEU ASN PHE ALA ALA ASP VAL CYS SEQRES 16 A 343 SER ASP SER ALA SER LEU ASN ARG VAL VAL GLU LYS LEU SEQRES 17 A 343 VAL LEU GLU VAL GLY ASP ILE HIS VAL LEU ARG ASP PRO SEQRES 18 A 343 THR ARG GLY GLY LEU ALA THR THR LEU ASN GLU ILE ALA SEQRES 19 A 343 GLY GLN SER GLN ALA VAL CYS HIS VAL LEU GLU THR ALA SEQRES 20 A 343 VAL PRO VAL ARG GLU SER VAL ARG ASN GLY CYS SER PHE SEQRES 21 A 343 LEU GLY LEU ASP PRO LEU TYR LEU ALA ASN GLU GLY LYS SEQRES 22 A 343 LEU ILE CYS ILE LEU PRO GLU GLU ARG ALA GLU ALA ALA SEQRES 23 A 343 LEU ALA VAL LEU ARG GLU GLY PRO HIS GLY GLU HIS ALA SEQRES 24 A 343 ALA ARG ILE GLY SER VAL LYS SER VAL GLY GLU LEU GLY SEQRES 25 A 343 ALA ALA ARG ALA GLY GLN VAL VAL MET GLU THR ALA LEU SEQRES 26 A 343 GLY GLY HIS ARG LEU LEU SER MET LEU GLU GLY GLU GLN SEQRES 27 A 343 LEU PRO ARG ILE CYS HET MG A 343 1 HET MG A 344 1 HET ATP A 342 31 HETNAM MG MAGNESIUM ION HETNAM ATP ADENOSINE-5'-TRIPHOSPHATE FORMUL 2 MG 2(MG 2+) FORMUL 4 ATP C10 H16 N5 O13 P3 FORMUL 5 HOH *182(H2 O) HELIX 1 1 LEU A 7 SER A 12 5 6 HELIX 2 2 GLY A 14 LEU A 24 1 11 HELIX 3 3 LEU A 24 ASP A 30 1 7 HELIX 4 4 ASN A 31 THR A 36 1 6 HELIX 5 5 ILE A 68 MET A 82 1 15 HELIX 6 6 ASP A 101 GLY A 120 1 20 HELIX 7 7 SER A 156 ALA A 160 5 5 HELIX 8 8 GLY A 173 ARG A 183 1 11 HELIX 9 9 LEU A 199 VAL A 210 1 12 HELIX 10 10 GLY A 222 GLN A 236 1 15 HELIX 11 11 THR A 244 VAL A 246 5 3 HELIX 12 12 ARG A 249 LEU A 259 1 11 HELIX 13 13 PRO A 277 GLU A 290 1 14 HELIX 14 14 HIS A 293 ALA A 297 5 5 SHEET 1 A 4 LEU A 49 TYR A 56 0 SHEET 2 A 4 MET A 139 ILE A 149 -1 O ILE A 141 N TYR A 56 SHEET 3 A 4 ALA A 85 GLU A 97 -1 N GLY A 93 O ASN A 142 SHEET 4 A 4 PHE A 122 VAL A 131 1 O VAL A 131 N LEU A 96 SHEET 1 B 2 PHE A 62 PHE A 63 0 SHEET 2 B 2 GLY A 66 ASP A 67 -1 O GLY A 66 N PHE A 63 SHEET 1 C 7 VAL A 215 ARG A 217 0 SHEET 2 C 7 ILE A 273 LEU A 276 -1 O ILE A 273 N ARG A 217 SHEET 3 C 7 ALA A 165 ILE A 168 -1 N LEU A 167 O CYS A 274 SHEET 4 C 7 ALA A 298 LYS A 304 -1 O ALA A 298 N ILE A 168 SHEET 5 C 7 VAL A 238 LEU A 242 -1 N LEU A 242 O ILE A 300 SHEET 6 C 7 VAL A 317 GLU A 320 1 O GLU A 320 N VAL A 241 SHEET 7 C 7 HIS A 326 LEU A 328 -1 O ARG A 327 N MET A 319 LINK OD2 ASP A 39 MG MG A 344 4555 1555 2.34 LINK OD1 ASP A 54 MG MG A 343 1555 1555 2.01 LINK OD2 ASP A 79 MG MG A 344 1555 1555 2.20 LINK OD1 ASP A 127 MG MG A 343 4555 1555 2.12 LINK OD1 ASP A 218 MG MG A 344 1555 1555 1.89 LINK OD2 ASP A 218 MG MG A 344 1555 1555 2.89 LINK O2A ATP A 342 MG MG A 343 1555 1555 2.08 LINK O1G ATP A 342 MG MG A 343 1555 1555 2.06 LINK O1B ATP A 342 MG MG A 343 1555 1555 2.08 LINK O2B ATP A 342 MG MG A 344 1555 1555 2.05 LINK MG MG A 343 O HOH A 453 1555 1555 1.97 LINK MG MG A 344 O HOH A 434 1555 1555 2.50 CISPEP 1 ASP A 59 PRO A 60 0 3.60 CISPEP 2 ASP A 152 PRO A 153 0 -1.91 CISPEP 3 LEU A 309 GLY A 310 0 -0.38 SITE 1 AC1 4 ASP A 54 ASP A 127 ATP A 342 HOH A 453 SITE 1 AC2 5 ASP A 39 ASP A 79 ASP A 218 ATP A 342 SITE 2 AC2 5 HOH A 434 SITE 1 AC3 27 ILE A 21 PHE A 25 LEU A 34 LEU A 37 SITE 2 AC3 27 ASN A 38 ASP A 39 ASP A 54 ASP A 79 SITE 3 AC3 27 CYS A 92 PHE A 94 THR A 125 GLY A 126 SITE 4 AC3 27 ASP A 127 THR A 128 LYS A 129 THR A 220 SITE 5 AC3 27 ARG A 221 MG A 343 MG A 344 HOH A 354 SITE 6 AC3 27 HOH A 370 HOH A 371 HOH A 372 HOH A 405 SITE 7 AC3 27 HOH A 434 HOH A 453 HOH A 512 CRYST1 67.628 67.628 184.218 90.00 90.00 120.00 P 31 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014787 0.008537 0.000000 0.00000 SCALE2 0.000000 0.017074 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005428 0.00000