HEADER HYDROLASE 29-MAY-07 2Z2Z TITLE CRYSTAL STRUCTURE OF UNAUTOPROCESSED FORM OF TK-SUBTILISIN SOAKED BY TITLE 2 10MM CACL2 CAVEAT 2Z2Z CHIRALITY ERROR AT THE CB CENTER OF THR A 361 COMPND MOL_ID: 1; COMPND 2 MOLECULE: TK-SUBTILISIN PRECURSOR; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 28-422; COMPND 5 EC: 3.4.21.62; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOCOCCUS KODAKARENSIS; SOURCE 3 ORGANISM_TAXID: 69014; SOURCE 4 STRAIN: KOD1; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21DE3; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET25B KEYWDS SUBTILISIN, THERMOCOCCUS KODAKARAENSIS, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR S.TANAKA,H.MATSUMURA,Y.KOGA,K.TAKANO,S.KANAYA REVDAT 7 09-OCT-24 2Z2Z 1 REMARK REVDAT 6 01-NOV-23 2Z2Z 1 REMARK REVDAT 5 10-NOV-21 2Z2Z 1 REMARK SEQADV REVDAT 4 13-JUL-11 2Z2Z 1 VERSN REVDAT 3 08-SEP-09 2Z2Z 1 CAVEAT REVDAT 2 24-FEB-09 2Z2Z 1 VERSN REVDAT 1 04-DEC-07 2Z2Z 0 JRNL AUTH S.TANAKA,H.MATSUMURA,Y.KOGA,K.TAKANO,S.KANAYA JRNL TITL FOUR NEW CRYSTAL STRUCTURES OF TK-SUBTILISIN IN JRNL TITL 2 UNAUTOPROCESSED, AUTOPROCESSED AND MATURE FORMS: INSIGHT JRNL TITL 3 INTO STRUCTURAL CHANGES DURING MATURATION JRNL REF J.MOL.BIOL. V. 372 1055 2007 JRNL REFN ISSN 0022-2836 JRNL PMID 17706669 JRNL DOI 10.1016/J.JMB.2007.07.027 REMARK 2 REMARK 2 RESOLUTION. 1.87 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.0 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.87 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.33 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 33178 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.172 REMARK 3 R VALUE (WORKING SET) : 0.169 REMARK 3 FREE R VALUE : 0.212 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1752 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.87 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.91 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2309 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.1900 REMARK 3 BIN FREE R VALUE SET COUNT : 106 REMARK 3 BIN FREE R VALUE : 0.2480 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2861 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 7 REMARK 3 SOLVENT ATOMS : 410 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.49 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.130 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.127 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.118 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.821 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.960 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.941 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2922 ; 0.029 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 2654 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3998 ; 2.279 ; 1.952 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6174 ; 1.057 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 387 ; 5.351 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 472 ;17.847 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 465 ; 0.241 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3326 ; 0.011 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 530 ; 0.003 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 755 ; 0.247 ; 0.300 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 2853 ; 0.227 ; 0.300 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 374 ; 0.219 ; 0.500 REMARK 3 H-BOND (X...Y) OTHERS (A): 1 ; 0.002 ; 0.500 REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 35 ; 0.213 ; 0.500 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 18 ; 0.250 ; 0.300 REMARK 3 SYMMETRY VDW OTHERS (A): 46 ; 0.332 ; 0.300 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 27 ; 0.477 ; 0.500 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1926 ; 1.429 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3102 ; 2.366 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 996 ; 3.585 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 896 ; 5.437 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2Z2Z COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 30-MAY-07. REMARK 100 THE DEPOSITION ID IS D_1000027455. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-OCT-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL38B1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RIGAKU JUPITER 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 34961 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.870 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.04200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 45.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.87 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.93 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.18800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 7.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 2E1P REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.39 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.53 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 4.0M SODIUM FORMATE, PH 8.0, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 46.32900 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 62.08650 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 36.15700 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 46.32900 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 62.08650 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 36.15700 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 46.32900 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 62.08650 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 36.15700 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 46.32900 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 62.08650 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 36.15700 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LEU A 75 REMARK 465 GLY A 76 REMARK 465 GLY A 77 REMARK 465 GLY A 78 REMARK 465 SER A 79 REMARK 465 THR A 80 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 CB CYS A 147 O HOH A 1409 1.62 REMARK 500 NE2 GLN A 81 O HOH A 1413 1.63 REMARK 500 O HOH A 1209 O HOH A 1308 2.05 REMARK 500 O HOH A 1265 O HOH A 1321 2.09 REMARK 500 O HOH A 1230 O HOH A 1311 2.10 REMARK 500 O HOH A 1387 O HOH A 1400 2.11 REMARK 500 O HOH A 1206 O HOH A 1319 2.11 REMARK 500 O HOH A 1273 O HOH A 1338 2.14 REMARK 500 OD2 ASP A 381 O HOH A 1376 2.16 REMARK 500 O HOH A 1287 O HOH A 1315 2.17 REMARK 500 OD2 ASP A 167 O HOH A 1341 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 1407 O HOH A 1407 3656 0.78 REMARK 500 O HOH A 1173 O HOH A 1173 4556 1.67 REMARK 500 O HOH A 1321 O HOH A 1347 8555 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 VAL A 8 CB VAL A 8 CG1 -0.148 REMARK 500 VAL A 22 CB VAL A 22 CG2 -0.150 REMARK 500 VAL A 39 CB VAL A 39 CG2 -0.181 REMARK 500 VAL A 41 CB VAL A 41 CG2 -0.156 REMARK 500 GLU A 91 CD GLU A 91 OE2 0.137 REMARK 500 VAL A 93 CB VAL A 93 CG2 -0.161 REMARK 500 TRP A 131 CE3 TRP A 131 CZ3 -0.104 REMARK 500 ARG A 183 NE ARG A 183 CZ 0.080 REMARK 500 THR A 361 CB THR A 361 CG2 -0.225 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 115 CB - CG - OD2 ANGL. DEV. = 5.6 DEGREES REMARK 500 ASP A 121 CB - CG - OD1 ANGL. DEV. = 16.5 DEGREES REMARK 500 ASP A 121 CB - CG - OD2 ANGL. DEV. = -7.4 DEGREES REMARK 500 CYS A 132 CB - CA - C ANGL. DEV. = 15.5 DEGREES REMARK 500 LEU A 144 CB - CG - CD2 ANGL. DEV. = 10.9 DEGREES REMARK 500 ASP A 149 CB - CG - OD2 ANGL. DEV. = 8.6 DEGREES REMARK 500 ASP A 167 CB - CG - OD2 ANGL. DEV. = 5.5 DEGREES REMARK 500 ARG A 183 CD - NE - CZ ANGL. DEV. = 15.5 DEGREES REMARK 500 ARG A 183 NE - CZ - NH1 ANGL. DEV. = 15.5 DEGREES REMARK 500 ARG A 183 NE - CZ - NH2 ANGL. DEV. = -10.5 DEGREES REMARK 500 ASP A 186 CB - CG - OD1 ANGL. DEV. = 8.8 DEGREES REMARK 500 ASP A 214 CB - CG - OD2 ANGL. DEV. = 8.9 DEGREES REMARK 500 ASP A 225 CB - CG - OD1 ANGL. DEV. = 5.7 DEGREES REMARK 500 ASP A 289 CB - CG - OD2 ANGL. DEV. = 5.5 DEGREES REMARK 500 ARG A 297 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 ARG A 297 NE - CZ - NH2 ANGL. DEV. = -3.8 DEGREES REMARK 500 ASP A 372 CB - CG - OD1 ANGL. DEV. = 6.9 DEGREES REMARK 500 ASP A 379 CB - CG - OD2 ANGL. DEV. = -5.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 105 36.21 -77.21 REMARK 500 ASP A 115 -149.28 -160.23 REMARK 500 ASN A 166 -145.17 -154.67 REMARK 500 VAL A 170 -162.49 -127.65 REMARK 500 ILE A 219 -76.24 -122.92 REMARK 500 SER A 316 -166.59 -126.79 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 1003 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 1004 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 1005 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 1006 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 1007 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2Z2X RELATED DB: PDB REMARK 900 MATURE TK-SUBTILISIN REMARK 900 RELATED ID: 2Z2Y RELATED DB: PDB REMARK 900 AUTOPROCESSED FORM OF TK-SUBTILISIN REMARK 900 RELATED ID: 2Z30 RELATED DB: PDB REMARK 900 COMPLEX FORM BETWEEN MAT-TK-SUBTILISIN AND TK-PROPEPTIDE DBREF 2Z2Z A 4 398 UNP P58502 TKSU_PYRKO 28 422 SEQADV 2Z2Z ALA A 324 UNP P58502 SER 348 ENGINEERED MUTATION SEQRES 1 A 395 ASN THR ILE ARG VAL ILE VAL SER VAL ASP LYS ALA LYS SEQRES 2 A 395 PHE ASN PRO HIS GLU VAL LEU GLY ILE GLY GLY HIS ILE SEQRES 3 A 395 VAL TYR GLN PHE LYS LEU ILE PRO ALA VAL VAL VAL ASP SEQRES 4 A 395 VAL PRO ALA ASN ALA VAL GLY LYS LEU LYS LYS MET PRO SEQRES 5 A 395 GLY VAL GLU LYS VAL GLU PHE ASP HIS GLN ALA VAL LEU SEQRES 6 A 395 LEU GLY LYS PRO SER TRP LEU GLY GLY GLY SER THR GLN SEQRES 7 A 395 PRO ALA GLN THR ILE PRO TRP GLY ILE GLU ARG VAL LYS SEQRES 8 A 395 ALA PRO SER VAL TRP SER ILE THR ASP GLY SER VAL SER SEQRES 9 A 395 VAL ILE GLN VAL ALA VAL LEU ASP THR GLY VAL ASP TYR SEQRES 10 A 395 ASP HIS PRO ASP LEU ALA ALA ASN ILE ALA TRP CYS VAL SEQRES 11 A 395 SER THR LEU ARG GLY LYS VAL SER THR LYS LEU ARG ASP SEQRES 12 A 395 CYS ALA ASP GLN ASN GLY HIS GLY THR HIS VAL ILE GLY SEQRES 13 A 395 THR ILE ALA ALA LEU ASN ASN ASP ILE GLY VAL VAL GLY SEQRES 14 A 395 VAL ALA PRO GLY VAL GLN ILE TYR SER VAL ARG VAL LEU SEQRES 15 A 395 ASP ALA ARG GLY SER GLY SER TYR SER ASP ILE ALA ILE SEQRES 16 A 395 GLY ILE GLU GLN ALA ILE LEU GLY PRO ASP GLY VAL ALA SEQRES 17 A 395 ASP LYS ASP GLY ASP GLY ILE ILE ALA GLY ASP PRO ASP SEQRES 18 A 395 ASP ASP ALA ALA GLU VAL ILE SER MET SER LEU GLY GLY SEQRES 19 A 395 PRO ALA ASP ASP SER TYR LEU TYR ASP MET ILE ILE GLN SEQRES 20 A 395 ALA TYR ASN ALA GLY ILE VAL ILE VAL ALA ALA SER GLY SEQRES 21 A 395 ASN GLU GLY ALA PRO SER PRO SER TYR PRO ALA ALA TYR SEQRES 22 A 395 PRO GLU VAL ILE ALA VAL GLY ALA ILE ASP SER ASN ASP SEQRES 23 A 395 ASN ILE ALA SER PHE SER ASN ARG GLN PRO GLU VAL SER SEQRES 24 A 395 ALA PRO GLY VAL ASP ILE LEU SER THR TYR PRO ASP ASP SEQRES 25 A 395 SER TYR GLU THR LEU MET GLY THR ALA MET ALA THR PRO SEQRES 26 A 395 HIS VAL SER GLY VAL VAL ALA LEU ILE GLN ALA ALA TYR SEQRES 27 A 395 TYR GLN LYS TYR GLY LYS ILE LEU PRO VAL GLY THR PHE SEQRES 28 A 395 ASP ASP ILE SER LYS ASN THR VAL ARG GLY ILE LEU HIS SEQRES 29 A 395 ILE THR ALA ASP ASP LEU GLY PRO THR GLY TRP ASP ALA SEQRES 30 A 395 ASP TYR GLY TYR GLY VAL VAL ARG ALA ALA LEU ALA VAL SEQRES 31 A 395 GLN ALA ALA LEU GLY HET CA A1001 1 HET CA A1002 1 HET CA A1003 1 HET CA A1004 1 HET CA A1005 1 HET CA A1006 1 HET CA A1007 1 HETNAM CA CALCIUM ION FORMUL 2 CA 7(CA 2+) FORMUL 9 HOH *410(H2 O) HELIX 1 1 ASN A 18 ILE A 25 1 8 HELIX 2 2 ALA A 47 LYS A 53 1 7 HELIX 3 3 PRO A 87 VAL A 93 1 7 HELIX 4 4 ALA A 95 ILE A 101 5 7 HELIX 5 5 LEU A 125 ALA A 127 5 3 HELIX 6 6 LEU A 136 LYS A 139 5 4 HELIX 7 7 LYS A 143 ALA A 148 1 6 HELIX 8 8 GLY A 152 ALA A 163 1 12 HELIX 9 9 TYR A 193 GLY A 206 1 14 HELIX 10 10 ASP A 241 ALA A 254 1 14 HELIX 11 11 GLY A 322 GLY A 346 1 25 HELIX 12 12 THR A 361 ALA A 370 1 10 HELIX 13 13 ARG A 388 GLY A 398 1 11 SHEET 1 A 4 HIS A 28 GLN A 32 0 SHEET 2 A 4 ALA A 38 PRO A 44 -1 O VAL A 40 N VAL A 30 SHEET 3 A 4 THR A 5 VAL A 12 -1 N VAL A 10 O VAL A 39 SHEET 4 A 4 VAL A 57 PHE A 62 -1 O GLU A 61 N ILE A 9 SHEET 1 B 3 SER A 190 SER A 192 0 SHEET 2 B 3 GLN A 65 LEU A 68 -1 N ALA A 66 O GLY A 191 SHEET 3 B 3 LEU A 235 GLY A 236 -1 O GLY A 236 N VAL A 67 SHEET 1 C 3 LYS A 71 PRO A 72 0 SHEET 2 C 3 SER A 316 MET A 321 -1 O MET A 321 N LYS A 71 SHEET 3 C 3 ILE A 308 TYR A 312 -1 N TYR A 312 O SER A 316 SHEET 1 D 7 ILE A 129 SER A 134 0 SHEET 2 D 7 GLN A 178 ARG A 183 1 O ARG A 183 N VAL A 133 SHEET 3 D 7 GLN A 110 ASP A 115 1 N VAL A 113 O VAL A 182 SHEET 4 D 7 VAL A 230 MET A 233 1 O VAL A 230 N ALA A 112 SHEET 5 D 7 VAL A 257 ALA A 261 1 O VAL A 259 N ILE A 231 SHEET 6 D 7 VAL A 279 ILE A 285 1 O ILE A 280 N ALA A 260 SHEET 7 D 7 VAL A 301 PRO A 304 1 O VAL A 301 N GLY A 283 SSBOND 1 CYS A 132 CYS A 147 1555 1555 2.09 CISPEP 1 TYR A 272 PRO A 273 0 -0.16 CISPEP 2 PRO A 313 ASP A 314 0 -4.85 SITE 1 AC1 6 VAL A 108 GLN A 110 ALA A 227 GLU A 229 SITE 2 AC1 6 HOH A1405 HOH A1408 SITE 1 AC2 6 ASP A 119 ASP A 121 ASP A 314 ASP A 315 SITE 2 AC2 6 HOH A1086 HOH A1350 SITE 1 AC3 6 LEU A 205 ASP A 208 VAL A 210 ASP A 226 SITE 2 AC3 6 HOH A1008 HOH A1010 SITE 1 AC4 6 ASP A 212 ASP A 214 ASP A 216 ILE A 218 SITE 2 AC4 6 ASP A 222 ASP A 225 SITE 1 AC5 6 ASP A 214 ASP A 216 ASP A 222 ASP A 224 SITE 2 AC5 6 HOH A1385 HOH A1406 SITE 1 AC6 6 ASP A 372 LEU A 373 PRO A 375 GLY A 377 SITE 2 AC6 6 ASP A 379 HOH A1066 SITE 1 AC7 6 GLN A 84 ASP A 124 LEU A 164 ASN A 166 SITE 2 AC7 6 ILE A 168 VAL A 170 CRYST1 92.658 124.173 72.314 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010792 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008053 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013829 0.00000