HEADER IMMUNE SYSTEM 01-JUN-07 2Z35 TITLE CRYSTAL STRUCTURE OF IMMUNE RECEPTOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: T-CELL RECEPTOR ALPHA-CHAIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: T-CELL RECEPTOR BETA-CHAIN; COMPND 7 CHAIN: B; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 9 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 10 ORGANISM_TAXID: 10090; SOURCE 11 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 12 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS IMMUNE RECEPTOR, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR D.FENG,C.J.BOND,L.K.ELY,K.C.GARCIA REVDAT 2 24-FEB-09 2Z35 1 VERSN REVDAT 1 09-OCT-07 2Z35 0 JRNL AUTH D.FENG,C.J.BOND,L.K.ELY,J.MAYNARD,K.C.GARCIA JRNL TITL STRUCTURAL EVIDENCE FOR A GERMLINE-ENCODED T CELL JRNL TITL 2 RECEPTOR-MAJOR HISTOCOMPATIBILITY COMPLEX JRNL TITL 3 INTERACTION 'CODON' JRNL REF NAT.IMMUNOL. V. 8 975 2007 JRNL REFN ISSN 1529-2908 JRNL PMID 17694060 JRNL DOI 10.1038/NI1502 REMARK 1 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES, PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 96.1 REMARK 3 NUMBER OF REFLECTIONS : 13532 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING SET) : 0.263 REMARK 3 FREE R VALUE : 0.285 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1726 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 25 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : NULL REMARK 3 BOND ANGLES (DEGREES) : NULL REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2Z35 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 05-JUN-07. REMARK 100 THE RCSB ID CODE IS RCSB027461. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL11-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 13532 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.1 REMARK 200 DATA REDUNDANCY : 6.000 REMARK 200 R MERGE (I) : 0.06600 REMARK 200 R SYM (I) : 0.06600 REMARK 200 FOR THE DATA SET : 22.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.25 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.4 REMARK 200 DATA REDUNDANCY IN SHELL : 6.10 REMARK 200 R MERGE FOR SHELL (I) : 0.37200 REMARK 200 R SYM FOR SHELL (I) : 0.37200 REMARK 200 FOR SHELL : 5.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.39 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.96 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.8M MONO-SODIUM DIHYDROGEN REMARK 280 PHOSPHATE, 0.8M MONO-POTASSIUM DIHYDROGEN PHOSPHATE AND 0.1M REMARK 280 HEPES, PH 7.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 33.99700 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 36.90100 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 57.68700 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 33.99700 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 36.90100 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 57.68700 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 33.99700 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 36.90100 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 57.68700 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 33.99700 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 36.90100 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 57.68700 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 14 131.46 -38.11 REMARK 500 SER A 27 56.60 -116.56 REMARK 500 TYR A 29 109.85 -54.58 REMARK 500 LEU A 46 -60.02 -105.36 REMARK 500 LYS A 53 -9.32 74.16 REMARK 500 SER A 58 144.92 177.32 REMARK 500 ARG A 59 16.60 51.00 REMARK 500 THR A 71 55.36 38.58 REMARK 500 PHE A 73 54.37 -158.78 REMARK 500 GLN A 81 -158.54 -92.58 REMARK 500 SER A 85 102.10 -59.02 REMARK 500 ALA A 86 -160.08 -167.00 REMARK 500 GLU A 98 50.05 -102.17 REMARK 500 ALA B 52 132.59 -39.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE SEQUNCE DATABASE FOR CHAIN A AND B REMARK 999 DOES NOT CURRENTLY EXIST IN UNP. DBREF 2Z35 A 1 93 UNP Q5R1F5 Q5R1F5_MOUSE 21 112 DBREF 2Z35 B 3 117 UNP A2NTY6 A2NTY6_MOUSE 32 144 SEQRES 1 A 112 ASP SER VAL THR GLN THR GLY GLY GLN VAL ALA LEU SER SEQRES 2 A 112 GLU GLU ASP PHE LEU THR ILE HIS CYS ASN TYR SER ALA SEQRES 3 A 112 SER GLY TYR PRO ALA LEU PHE TRP TYR VAL GLN TYR PRO SEQRES 4 A 112 GLY GLU GLY PRO GLN PHE LEU PHE ARG ALA SER ARG ASP SEQRES 5 A 112 LYS GLU LYS GLY SER SER ARG GLY PHE GLU ALA THR TYR SEQRES 6 A 112 ASN LYS GLU ALA THR SER PHE HIS LEU GLN LYS ALA SER SEQRES 7 A 112 VAL GLN GLU SER ASP SER ALA VAL TYR TYR CYS ALA LEU SEQRES 8 A 112 SER GLU ASN TYR GLY ASN GLU LYS ILE THR PHE GLY ALA SEQRES 9 A 112 GLY THR LYS LEU THR ILE LYS PRO SEQRES 1 B 111 ALA VAL THR GLN SER PRO ARG ASN LYS VAL ALA VAL THR SEQRES 2 B 111 GLY GLU LYS VAL THR LEU SER CYS ASN GLN THR ASN ASN SEQRES 3 B 111 HIS ASN ASN MET TYR TRP TYR ARG GLN ASP THR GLY HIS SEQRES 4 B 111 GLY LEU ARG LEU ILE TYR TYR SER TYR GLY ALA GLY SER SEQRES 5 B 111 THR GLU LYS GLY ASP ILE PRO ASP GLY TYR LYS ALA SER SEQRES 6 B 111 ARG PRO SER GLN GLU ASN PHE SER LEU THR LEU GLU SER SEQRES 7 B 111 ALA THR PRO SER GLN THR SER VAL TYR PHE CYS ALA SER SEQRES 8 B 111 GLY ASP ALA SER GLY ALA GLU THR LEU TYR PHE GLY PRO SEQRES 9 B 111 GLY THR ARG LEU THR VAL LEU FORMUL 3 HOH *25(H2 O) HELIX 1 1 THR B 83 THR B 87 5 5 HELIX 2 2 ALA B 97 ALA B 100 5 4 SHEET 1 A 2 SER A 2 THR A 4 0 SHEET 2 A 2 ASN A 23 SER A 25 -1 O ASN A 23 N THR A 4 SHEET 1 B 5 GLN A 9 SER A 13 0 SHEET 2 B 5 THR A 110 LYS A 115 1 O LYS A 111 N VAL A 10 SHEET 3 B 5 VAL A 87 SER A 93 -1 N TYR A 88 O THR A 110 SHEET 4 B 5 ALA A 31 GLN A 37 -1 N PHE A 33 O ALA A 91 SHEET 5 B 5 GLN A 44 ALA A 49 -1 O GLN A 44 N VAL A 36 SHEET 1 C 4 GLN A 9 SER A 13 0 SHEET 2 C 4 THR A 110 LYS A 115 1 O LYS A 111 N VAL A 10 SHEET 3 C 4 VAL A 87 SER A 93 -1 N TYR A 88 O THR A 110 SHEET 4 C 4 ILE A 104 PHE A 106 -1 O THR A 105 N LEU A 92 SHEET 1 D 2 LEU A 18 ILE A 20 0 SHEET 2 D 2 LEU A 75 LYS A 77 -1 O LYS A 77 N LEU A 18 SHEET 1 E 2 LYS A 55 SER A 58 0 SHEET 2 E 2 PHE A 62 THR A 65 -1 O PHE A 62 N SER A 58 SHEET 1 F 4 VAL B 4 SER B 7 0 SHEET 2 F 4 VAL B 19 GLN B 25 -1 O SER B 22 N SER B 7 SHEET 3 F 4 ASN B 74 LEU B 79 -1 O LEU B 79 N VAL B 19 SHEET 4 F 4 LYS B 66 SER B 68 -1 N LYS B 66 O THR B 78 SHEET 1 G 6 ASN B 10 VAL B 14 0 SHEET 2 G 6 THR B 112 LEU B 117 1 O LEU B 117 N ALA B 13 SHEET 3 G 6 SER B 88 ASP B 96 -1 N TYR B 90 O THR B 112 SHEET 4 G 6 ASN B 31 ASP B 38 -1 N TYR B 35 O PHE B 91 SHEET 5 G 6 GLY B 42 SER B 49 -1 O SER B 49 N MET B 32 SHEET 6 G 6 GLU B 56 LYS B 57 -1 O GLU B 56 N TYR B 48 SHEET 1 H 4 ASN B 10 VAL B 14 0 SHEET 2 H 4 THR B 112 LEU B 117 1 O LEU B 117 N ALA B 13 SHEET 3 H 4 SER B 88 ASP B 96 -1 N TYR B 90 O THR B 112 SHEET 4 H 4 THR B 105 PHE B 108 -1 O THR B 105 N ASP B 96 SSBOND 1 CYS A 22 CYS A 90 1555 1555 2.03 SSBOND 2 CYS B 23 CYS B 92 1555 1555 2.03 CISPEP 1 SER B 7 PRO B 8 0 -0.11 CRYST1 67.994 73.802 115.374 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014707 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013550 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008667 0.00000