HEADER HYDROLASE 04-JUN-07 2Z3I TITLE CRYSTAL STRUCTURE OF BLASTICIDIN S DEAMINASE (BSD) MUTANT E56Q TITLE 2 COMPLEXED WITH SUBSTRATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: BLASTICIDIN-S DEAMINASE; COMPND 3 CHAIN: A, B, C, D; COMPND 4 EC: 3.5.4.23; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ASPERGILLUS TERREUS; SOURCE 3 ORGANISM_TAXID: 33178; SOURCE 4 STRAIN: S-712; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET-12A KEYWDS HYDROLASE, CYTIDINE DEAMINASE FAMILY, TETRAMER EXPDTA X-RAY DIFFRACTION AUTHOR T.KUMASAKA,M.YAMAMOTO,M.FURUICHI,M.NAKASAKO,M.KIMURA,I.YAMAGUCHI, AUTHOR 2 T.UEKI REVDAT 6 01-NOV-23 2Z3I 1 REMARK REVDAT 5 10-NOV-21 2Z3I 1 REMARK SEQADV LINK REVDAT 4 13-JUL-11 2Z3I 1 VERSN REVDAT 3 24-FEB-09 2Z3I 1 VERSN REVDAT 2 29-APR-08 2Z3I 1 JRNL REVDAT 1 23-OCT-07 2Z3I 0 JRNL AUTH T.KUMASAKA,M.YAMAMOTO,M.FURUICHI,M.NAKASAKO,A.H.TEH, JRNL AUTH 2 M.KIMURA,I.YAMAGUCHI,T.UEKI JRNL TITL CRYSTAL STRUCTURES OF BLASTICIDIN S DEAMINASE (BSD): JRNL TITL 2 IMPLICATIONS FOR DYNAMIC PROPERTIES OF CATALYTIC ZINC JRNL REF J.BIOL.CHEM. V. 282 37103 2007 JRNL REFN ISSN 0021-9258 JRNL PMID 17959604 JRNL DOI 10.1074/JBC.M704476200 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH M.NAKASAKO,M.KIMURA,I.YAMAGUCHI REMARK 1 TITL CRYSTALLIZATION AND PRELIMINARY X-RAY DIFFRACTION STUDIES OF REMARK 1 TITL 2 BLASTICIDIN S DEAMINASE FROM ASPERGILLUS TERREUS REMARK 1 REF ACTA CRYSTALLOGR.,SECT.D V. 55 547 1999 REMARK 1 REFN ISSN 0907-4449 REMARK 1 PMID 10089374 REMARK 1 DOI 10.1107/S0907444998011809 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 91.5 REMARK 3 NUMBER OF REFLECTIONS : 46160 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.178 REMARK 3 R VALUE (WORKING SET) : 0.175 REMARK 3 FREE R VALUE : 0.220 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2436 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3150 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 85.47 REMARK 3 BIN R VALUE (WORKING SET) : 0.2090 REMARK 3 BIN FREE R VALUE SET COUNT : 156 REMARK 3 BIN FREE R VALUE : 0.2680 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3744 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 144 REMARK 3 SOLVENT ATOMS : 561 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.57 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.36000 REMARK 3 B22 (A**2) : -0.11000 REMARK 3 B33 (A**2) : -1.25000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.132 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.129 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.074 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.303 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.956 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.931 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3992 ; 0.012 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5452 ; 1.512 ; 2.007 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 520 ; 5.527 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 144 ;36.138 ;23.889 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 592 ;13.688 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 28 ;16.884 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 648 ; 0.086 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3012 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2155 ; 0.218 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2845 ; 0.303 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 436 ; 0.166 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 3 ; 0.267 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 42 ; 0.175 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 34 ; 0.170 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2631 ; 0.879 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4136 ; 1.524 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1508 ; 2.206 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1316 ; 3.280 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2Z3I COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 07-JUN-07. REMARK 100 THE DEPOSITION ID IS D_1000027474. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 7.00 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL45XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : DIAMOND (400) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 48599 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 91.5 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.05700 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 1WN5 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.78 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.60 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG8000, 0.1M SODIUM CACODYLATE, REMARK 280 50MM MAGNESIUM CHROLIDE, 1MM BLASTICIDIN-S, PH 7.00, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 27.66500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 72.99500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 34.78900 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 72.99500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 27.66500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 34.78900 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 14120 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18430 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -137.5 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 MET B 1 REMARK 465 MET C 1 REMARK 465 MET D 1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 ZN ZN B 2002 O HOH B 3141 1.57 REMARK 500 SG CYS B 91 O HOH B 3141 1.68 REMARK 500 OE1 GLU A 120 O HOH A 3120 2.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 129 41.93 72.05 REMARK 500 LEU B 3 -143.80 -131.37 REMARK 500 SER B 4 -139.91 -114.26 REMARK 500 ASN B 79 -169.65 -71.86 REMARK 500 ASN D 79 -178.30 -66.69 REMARK 500 GLU D 129 -159.95 -97.74 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 PRO C 2 LEU C 3 145.62 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A2001 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 54 SG REMARK 620 2 CYS A 88 SG 117.8 REMARK 620 3 CYS A 91 SG 116.3 125.8 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B2002 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 54 SG REMARK 620 2 CYS B 88 SG 118.9 REMARK 620 3 CYS B 91 SG 114.3 122.6 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN C2003 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS C 54 SG REMARK 620 2 CYS C 88 SG 118.5 REMARK 620 3 CYS C 91 SG 112.1 129.2 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN D2004 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS D 54 SG REMARK 620 2 CYS D 88 SG 118.1 REMARK 620 3 CYS D 91 SG 115.7 126.1 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BLS A 2500 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BLS B 2501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BLS C 2502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BLS D 2503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 2001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CAC A 3001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 2002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CAC B 3002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN C 2003 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CAC C 3003 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN D 2004 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CAC D 3004 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2Z3G RELATED DB: PDB REMARK 900 RELATED ID: 2Z3H RELATED DB: PDB REMARK 900 RELATED ID: 2Z3J RELATED DB: PDB DBREF 2Z3I A 1 130 UNP P0C2P0 BSD_ASPTE 1 130 DBREF 2Z3I B 1 130 UNP P0C2P0 BSD_ASPTE 1 130 DBREF 2Z3I C 1 130 UNP P0C2P0 BSD_ASPTE 1 130 DBREF 2Z3I D 1 130 UNP P0C2P0 BSD_ASPTE 1 130 SEQADV 2Z3I GLN A 56 UNP P0C2P0 GLU 56 ENGINEERED MUTATION SEQADV 2Z3I GLN B 56 UNP P0C2P0 GLU 56 ENGINEERED MUTATION SEQADV 2Z3I GLN C 56 UNP P0C2P0 GLU 56 ENGINEERED MUTATION SEQADV 2Z3I GLN D 56 UNP P0C2P0 GLU 56 ENGINEERED MUTATION SEQRES 1 A 130 MET PRO LEU SER GLN GLU GLU SER THR LEU ILE GLU ARG SEQRES 2 A 130 ALA THR ALA THR ILE ASN SER ILE PRO ILE SER GLU ASP SEQRES 3 A 130 TYR SER VAL ALA SER ALA ALA LEU SER SER ASP GLY ARG SEQRES 4 A 130 ILE PHE THR GLY VAL ASN VAL TYR HIS PHE THR GLY GLY SEQRES 5 A 130 PRO CYS ALA GLN LEU VAL VAL LEU GLY THR ALA ALA ALA SEQRES 6 A 130 ALA ALA ALA GLY ASN LEU THR CYS ILE VAL ALA ILE GLY SEQRES 7 A 130 ASN GLU ASN ARG GLY ILE LEU SER PRO CYS GLY ARG CYS SEQRES 8 A 130 ARG GLN VAL LEU LEU ASP LEU HIS PRO GLY ILE LYS ALA SEQRES 9 A 130 ILE VAL LYS ASP SER ASP GLY GLN PRO THR ALA VAL GLY SEQRES 10 A 130 ILE ARG GLU LEU LEU PRO SER GLY TYR VAL TRP GLU GLY SEQRES 1 B 130 MET PRO LEU SER GLN GLU GLU SER THR LEU ILE GLU ARG SEQRES 2 B 130 ALA THR ALA THR ILE ASN SER ILE PRO ILE SER GLU ASP SEQRES 3 B 130 TYR SER VAL ALA SER ALA ALA LEU SER SER ASP GLY ARG SEQRES 4 B 130 ILE PHE THR GLY VAL ASN VAL TYR HIS PHE THR GLY GLY SEQRES 5 B 130 PRO CYS ALA GLN LEU VAL VAL LEU GLY THR ALA ALA ALA SEQRES 6 B 130 ALA ALA ALA GLY ASN LEU THR CYS ILE VAL ALA ILE GLY SEQRES 7 B 130 ASN GLU ASN ARG GLY ILE LEU SER PRO CYS GLY ARG CYS SEQRES 8 B 130 ARG GLN VAL LEU LEU ASP LEU HIS PRO GLY ILE LYS ALA SEQRES 9 B 130 ILE VAL LYS ASP SER ASP GLY GLN PRO THR ALA VAL GLY SEQRES 10 B 130 ILE ARG GLU LEU LEU PRO SER GLY TYR VAL TRP GLU GLY SEQRES 1 C 130 MET PRO LEU SER GLN GLU GLU SER THR LEU ILE GLU ARG SEQRES 2 C 130 ALA THR ALA THR ILE ASN SER ILE PRO ILE SER GLU ASP SEQRES 3 C 130 TYR SER VAL ALA SER ALA ALA LEU SER SER ASP GLY ARG SEQRES 4 C 130 ILE PHE THR GLY VAL ASN VAL TYR HIS PHE THR GLY GLY SEQRES 5 C 130 PRO CYS ALA GLN LEU VAL VAL LEU GLY THR ALA ALA ALA SEQRES 6 C 130 ALA ALA ALA GLY ASN LEU THR CYS ILE VAL ALA ILE GLY SEQRES 7 C 130 ASN GLU ASN ARG GLY ILE LEU SER PRO CYS GLY ARG CYS SEQRES 8 C 130 ARG GLN VAL LEU LEU ASP LEU HIS PRO GLY ILE LYS ALA SEQRES 9 C 130 ILE VAL LYS ASP SER ASP GLY GLN PRO THR ALA VAL GLY SEQRES 10 C 130 ILE ARG GLU LEU LEU PRO SER GLY TYR VAL TRP GLU GLY SEQRES 1 D 130 MET PRO LEU SER GLN GLU GLU SER THR LEU ILE GLU ARG SEQRES 2 D 130 ALA THR ALA THR ILE ASN SER ILE PRO ILE SER GLU ASP SEQRES 3 D 130 TYR SER VAL ALA SER ALA ALA LEU SER SER ASP GLY ARG SEQRES 4 D 130 ILE PHE THR GLY VAL ASN VAL TYR HIS PHE THR GLY GLY SEQRES 5 D 130 PRO CYS ALA GLN LEU VAL VAL LEU GLY THR ALA ALA ALA SEQRES 6 D 130 ALA ALA ALA GLY ASN LEU THR CYS ILE VAL ALA ILE GLY SEQRES 7 D 130 ASN GLU ASN ARG GLY ILE LEU SER PRO CYS GLY ARG CYS SEQRES 8 D 130 ARG GLN VAL LEU LEU ASP LEU HIS PRO GLY ILE LYS ALA SEQRES 9 D 130 ILE VAL LYS ASP SER ASP GLY GLN PRO THR ALA VAL GLY SEQRES 10 D 130 ILE ARG GLU LEU LEU PRO SER GLY TYR VAL TRP GLU GLY HET BLS A2500 30 HET ZN A2001 1 HET CAC A3001 5 HET BLS B2501 30 HET ZN B2002 1 HET CAC B3002 5 HET BLS C2502 30 HET ZN C2003 1 HET CAC C3003 5 HET BLS D2503 30 HET ZN D2004 1 HET CAC D3004 5 HETNAM BLS BLASTICIDIN S HETNAM ZN ZINC ION HETNAM CAC CACODYLATE ION HETSYN CAC DIMETHYLARSINATE FORMUL 5 BLS 4(C17 H26 N8 O5) FORMUL 6 ZN 4(ZN 2+) FORMUL 7 CAC 4(C2 H6 AS O2 1-) FORMUL 17 HOH *561(H2 O) HELIX 1 1 SER A 4 ILE A 21 1 18 HELIX 2 2 CYS A 54 ALA A 66 1 13 HELIX 3 3 CYS A 88 HIS A 99 1 12 HELIX 4 4 ILE A 118 LEU A 122 1 5 HELIX 5 5 GLN B 5 ASN B 19 1 15 HELIX 6 6 CYS B 54 ALA B 66 1 13 HELIX 7 7 CYS B 88 HIS B 99 1 12 HELIX 8 8 ILE B 118 LEU B 122 1 5 HELIX 9 9 SER C 4 SER C 20 1 17 HELIX 10 10 CYS C 54 ALA C 66 1 13 HELIX 11 11 CYS C 88 HIS C 99 1 12 HELIX 12 12 ILE C 118 LEU C 122 1 5 HELIX 13 13 SER D 4 SER D 20 1 17 HELIX 14 14 CYS D 54 ALA D 66 1 13 HELIX 15 15 CYS D 88 HIS D 99 1 12 HELIX 16 16 ILE D 118 LEU D 122 1 5 SHEET 1 A 4 ILE A 40 VAL A 44 0 SHEET 2 A 4 VAL A 29 SER A 35 -1 N SER A 31 O GLY A 43 SHEET 3 A 4 LEU A 71 GLY A 78 -1 O ILE A 77 N ALA A 30 SHEET 4 A 4 GLY A 83 LEU A 85 -1 O GLY A 83 N GLY A 78 SHEET 1 B 5 ILE A 40 VAL A 44 0 SHEET 2 B 5 VAL A 29 SER A 35 -1 N SER A 31 O GLY A 43 SHEET 3 B 5 LEU A 71 GLY A 78 -1 O ILE A 77 N ALA A 30 SHEET 4 B 5 LYS A 103 LYS A 107 1 O ILE A 105 N ILE A 74 SHEET 5 B 5 PRO A 113 GLY A 117 -1 O THR A 114 N VAL A 106 SHEET 1 C 4 ILE B 40 VAL B 44 0 SHEET 2 C 4 VAL B 29 SER B 35 -1 N SER B 31 O GLY B 43 SHEET 3 C 4 LEU B 71 GLY B 78 -1 O ILE B 77 N ALA B 30 SHEET 4 C 4 GLY B 83 LEU B 85 -1 O GLY B 83 N GLY B 78 SHEET 1 D 5 ILE B 40 VAL B 44 0 SHEET 2 D 5 VAL B 29 SER B 35 -1 N SER B 31 O GLY B 43 SHEET 3 D 5 LEU B 71 GLY B 78 -1 O ILE B 77 N ALA B 30 SHEET 4 D 5 LYS B 103 LYS B 107 1 O ILE B 105 N ILE B 74 SHEET 5 D 5 PRO B 113 GLY B 117 -1 O THR B 114 N VAL B 106 SHEET 1 E 4 ILE C 40 VAL C 44 0 SHEET 2 E 4 VAL C 29 SER C 35 -1 N ALA C 33 O PHE C 41 SHEET 3 E 4 LEU C 71 GLY C 78 -1 O ILE C 77 N ALA C 30 SHEET 4 E 4 GLY C 83 LEU C 85 -1 O GLY C 83 N GLY C 78 SHEET 1 F 5 ILE C 40 VAL C 44 0 SHEET 2 F 5 VAL C 29 SER C 35 -1 N ALA C 33 O PHE C 41 SHEET 3 F 5 LEU C 71 GLY C 78 -1 O ILE C 77 N ALA C 30 SHEET 4 F 5 LYS C 103 LYS C 107 1 O ILE C 105 N ILE C 74 SHEET 5 F 5 PRO C 113 GLY C 117 -1 O THR C 114 N VAL C 106 SHEET 1 G 4 ILE D 40 VAL D 44 0 SHEET 2 G 4 VAL D 29 SER D 35 -1 N ALA D 33 O PHE D 41 SHEET 3 G 4 LEU D 71 GLY D 78 -1 O ILE D 77 N ALA D 30 SHEET 4 G 4 GLY D 83 LEU D 85 -1 O GLY D 83 N GLY D 78 SHEET 1 H 5 ILE D 40 VAL D 44 0 SHEET 2 H 5 VAL D 29 SER D 35 -1 N ALA D 33 O PHE D 41 SHEET 3 H 5 LEU D 71 GLY D 78 -1 O ILE D 77 N ALA D 30 SHEET 4 H 5 LYS D 103 LYS D 107 1 O ILE D 105 N ILE D 74 SHEET 5 H 5 PRO D 113 GLY D 117 -1 O VAL D 116 N ALA D 104 LINK SG CYS A 54 ZN ZN A2001 1555 1555 2.25 LINK SG CYS A 88 ZN ZN A2001 1555 1555 2.28 LINK SG CYS A 91 ZN ZN A2001 1555 1555 2.17 LINK SG CYS B 54 ZN ZN B2002 1555 1555 2.26 LINK SG CYS B 88 ZN ZN B2002 1555 1555 2.32 LINK SG CYS B 91 ZN ZN B2002 1555 1555 2.32 LINK SG CYS C 54 ZN ZN C2003 1555 1555 2.22 LINK SG CYS C 88 ZN ZN C2003 1555 1555 2.33 LINK SG CYS C 91 ZN ZN C2003 1555 1555 2.27 LINK SG CYS D 54 ZN ZN D2004 1555 1555 2.18 LINK SG CYS D 88 ZN ZN D2004 1555 1555 2.33 LINK SG CYS D 91 ZN ZN D2004 1555 1555 2.28 SITE 1 AC1 22 GLU A 25 ASP A 26 SER A 28 VAL A 29 SITE 2 AC1 22 ASN A 45 TYR A 47 CYS A 54 ALA A 55 SITE 3 AC1 22 GLN A 56 ARG A 82 SER A 86 PRO A 87 SITE 4 AC1 22 CYS A 88 HOH A3002 HOH A3091 HOH A3093 SITE 5 AC1 22 HOH A3138 TYR B 126 TRP B 128 HOH B3028 SITE 6 AC1 22 TRP D 128 GLY D 130 SITE 1 AC2 20 TYR A 126 TRP A 128 GLU B 25 ASP B 26 SITE 2 AC2 20 SER B 28 VAL B 29 ASN B 45 TYR B 47 SITE 3 AC2 20 CYS B 54 ALA B 55 GLN B 56 ARG B 82 SITE 4 AC2 20 SER B 86 PRO B 87 CYS B 88 HOH B3015 SITE 5 AC2 20 HOH B3088 HOH B3113 HOH B3137 TRP C 128 SITE 1 AC3 22 GLY B 130 GLU C 25 ASP C 26 SER C 28 SITE 2 AC3 22 VAL C 29 ASN C 45 TYR C 47 CYS C 54 SITE 3 AC3 22 ALA C 55 GLN C 56 ARG C 82 SER C 86 SITE 4 AC3 22 PRO C 87 CYS C 88 HOH C3028 HOH C3078 SITE 5 AC3 22 HOH C3098 HOH C3105 HOH C3133 HOH C3149 SITE 6 AC3 22 TYR D 126 TRP D 128 SITE 1 AC4 22 TRP A 128 GLU A 129 TYR C 126 TRP C 128 SITE 2 AC4 22 GLU C 129 GLU D 25 ASP D 26 SER D 28 SITE 3 AC4 22 VAL D 29 ASN D 45 TYR D 47 CYS D 54 SITE 4 AC4 22 ALA D 55 GLN D 56 ARG D 82 SER D 86 SITE 5 AC4 22 PRO D 87 CYS D 88 HOH D3089 HOH D3093 SITE 6 AC4 22 HOH D3132 HOH D3139 SITE 1 AC5 5 CYS A 54 CYS A 88 CYS A 91 HOH A3063 SITE 2 AC5 5 HOH A3138 SITE 1 AC6 4 SER A 4 GLU A 7 CYS A 73 ALA A 115 SITE 1 AC7 5 CYS B 54 CYS B 88 CYS B 91 HOH B3047 SITE 2 AC7 5 HOH B3141 SITE 1 AC8 7 SER B 4 GLU B 7 THR B 72 CYS B 73 SITE 2 AC8 7 LYS B 103 ALA B 115 HOH B3021 SITE 1 AC9 5 CYS C 54 CYS C 88 CYS C 91 HOH C3063 SITE 2 AC9 5 HOH C3149 SITE 1 BC1 4 GLU C 7 CYS C 73 ILE C 105 ALA C 115 SITE 1 BC2 5 CYS D 54 CYS D 88 CYS D 91 HOH D3049 SITE 2 BC2 5 HOH D3139 SITE 1 BC3 5 GLU D 6 GLU D 7 CYS D 73 LYS D 103 SITE 2 BC3 5 ALA D 115 CRYST1 55.330 69.578 145.990 90.00 90.00 90.00 P 21 21 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018073 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014372 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006850 0.00000