HEADER RECOMBINATION 12-JUN-07 2Z43 TITLE STRUCTURE OF A TWINNED CRYSTAL OF RADA COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA REPAIR AND RECOMBINATION PROTEIN RADA; COMPND 3 CHAIN: A, B, C; COMPND 4 SYNONYM: DNA STRAND EXCHANGE PROTEIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SULFOLOBUS SOLFATARICUS; SOURCE 3 ORGANISM_TAXID: 273057; SOURCE 4 STRAIN: P2; SOURCE 5 GENE: RADA; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET32 KEYWDS ARCHAEA, FILAMENT, DNA BINDING, RECOMBINATION, MOLECULAR SWITCH, KEYWDS 2 RECA, RAD51, DMC1 EXPDTA X-RAY DIFFRACTION AUTHOR L.T.CHEN,T.P.KO,A.H.J.WANG,T.F.WANG REVDAT 4 01-NOV-23 2Z43 1 REMARK REVDAT 3 13-JUL-11 2Z43 1 VERSN REVDAT 2 24-FEB-09 2Z43 1 VERSN REVDAT 1 13-NOV-07 2Z43 0 JRNL AUTH L.T.CHEN,T.P.KO,Y.W.CHANG,K.A.LIN,A.H.J.WANG,T.F.WANG JRNL TITL STRUCTURAL AND FUNCTIONAL ANALYSES OF FIVE CONSERVED JRNL TITL 2 POSITIVELY CHARGED RESIDUES IN THE L1 AND N-TERMINAL DNA JRNL TITL 3 BINDING MOTIFS OF ARCHAEAL RADA PROTEIN JRNL REF PLOS ONE V. 2 E858 2007 JRNL REFN ESSN 1932-6203 JRNL PMID 17848989 JRNL DOI 10.1371/JOURNAL.PONE.0000858 REMARK 2 REMARK 2 RESOLUTION. 1.93 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.93 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 94.2 REMARK 3 NUMBER OF REFLECTIONS : 78018 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.191 REMARK 3 FREE R VALUE : 0.241 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 3645 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.93 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.00 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 74.60 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.3060 REMARK 3 BIN FREE R VALUE : 0.3200 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : 264 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.014 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6298 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 1099 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 43.80 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.27 REMARK 3 ESD FROM SIGMAA (A) : 0.29 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.35 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.29 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.018 REMARK 3 BOND ANGLES (DEGREES) : 1.700 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : ISOTROPIC REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 THIS IS TWINNED DATA REFINEMENT. TWINNING FRACTION = 0.50, REMARK 3 TWINNING OPERATION = [H, -H-K, -L], REMARK 3 UNTWINNED R-WORK = 0.237, UNTWINNED R-FREE = 0.295 REMARK 4 REMARK 4 2Z43 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 14-JUN-07. REMARK 100 THE DEPOSITION ID IS D_1000027495. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-MAR-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSRRC REMARK 200 BEAMLINE : BL13B1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : SI 111 CHANNEL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 81660 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.930 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 200 DATA REDUNDANCY : 3.200 REMARK 200 R MERGE (I) : 0.05400 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 20.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.93 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 91.4 REMARK 200 DATA REDUNDANCY IN SHELL : 2.50 REMARK 200 R MERGE FOR SHELL (I) : 0.44900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: PDB ENTRY 2BKE REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.39 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.64 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100MM KCL, 25MM MGCL2, 15% REMARK 280 ISOPROPANOL, 50MM SODIUM CACODYLATE, PH 6.0, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 33.13733 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 66.27467 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 ASN A 3 REMARK 465 GLU A 4 REMARK 465 VAL A 5 REMARK 465 GLU A 6 REMARK 465 GLN A 7 REMARK 465 LYS A 8 REMARK 465 LYS A 9 REMARK 465 ASN A 10 REMARK 465 ILE A 11 REMARK 465 LYS A 12 REMARK 465 THR A 13 REMARK 465 ILE A 14 REMARK 465 ASN A 15 REMARK 465 ASP A 16 REMARK 465 LEU A 17 REMARK 465 PRO A 18 REMARK 465 GLY A 19 REMARK 465 ILE A 20 REMARK 465 SER A 21 REMARK 465 GLN A 22 REMARK 465 THR A 23 REMARK 465 VAL A 24 REMARK 465 ILE A 25 REMARK 465 ASN A 26 REMARK 465 LYS A 27 REMARK 465 LEU A 28 REMARK 465 ILE A 29 REMARK 465 GLU A 30 REMARK 465 ALA A 31 REMARK 465 GLY A 32 REMARK 465 TYR A 33 REMARK 465 SER A 34 REMARK 465 SER A 35 REMARK 465 LEU A 36 REMARK 465 GLU A 37 REMARK 465 THR A 38 REMARK 465 LEU A 39 REMARK 465 ALA A 40 REMARK 465 VAL A 41 REMARK 465 ALA A 42 REMARK 465 SER A 43 REMARK 465 PRO A 44 REMARK 465 GLN A 45 REMARK 465 ASP A 46 REMARK 465 LEU A 47 REMARK 465 SER A 48 REMARK 465 VAL A 49 REMARK 465 ALA A 50 REMARK 465 ALA A 51 REMARK 465 GLY A 52 REMARK 465 ILE A 53 REMARK 465 PRO A 54 REMARK 465 LEU A 55 REMARK 465 SER A 56 REMARK 465 THR A 57 REMARK 465 ALA A 58 REMARK 465 GLN A 59 REMARK 465 LYS A 60 REMARK 465 ILE A 61 REMARK 465 ILE A 62 REMARK 465 LYS A 63 REMARK 465 GLU A 64 REMARK 465 ALA A 65 REMARK 465 ARG A 66 REMARK 465 ASP A 67 REMARK 465 ALA A 68 REMARK 465 LEU A 69 REMARK 465 ASP A 70 REMARK 465 ILE A 71 REMARK 465 MET A 258 REMARK 465 ALA A 259 REMARK 465 ARG A 260 REMARK 465 PRO A 261 REMARK 465 ASP A 262 REMARK 465 MET A 263 REMARK 465 PHE A 264 REMARK 465 TYR A 265 REMARK 465 GLY A 266 REMARK 465 ASP A 267 REMARK 465 PRO A 268 REMARK 465 THR A 269 REMARK 465 VAL A 270 REMARK 465 ALA A 271 REMARK 465 VAL A 272 REMARK 465 GLY A 273 REMARK 465 GLY A 274 REMARK 465 HIS A 275 REMARK 465 THR A 276 REMARK 465 LEU A 277 REMARK 465 TYR A 278 REMARK 465 HIS A 279 REMARK 465 VAL A 280 REMARK 465 PRO A 281 REMARK 465 GLU A 324 REMARK 465 MET B 1 REMARK 465 SER B 2 REMARK 465 ASN B 3 REMARK 465 GLU B 4 REMARK 465 VAL B 5 REMARK 465 GLU B 6 REMARK 465 GLN B 7 REMARK 465 LYS B 8 REMARK 465 LYS B 9 REMARK 465 ASN B 10 REMARK 465 ILE B 11 REMARK 465 MET B 258 REMARK 465 ALA B 259 REMARK 465 ARG B 260 REMARK 465 PRO B 261 REMARK 465 ASP B 262 REMARK 465 MET B 263 REMARK 465 PHE B 264 REMARK 465 TYR B 265 REMARK 465 GLY B 266 REMARK 465 ASP B 267 REMARK 465 PRO B 268 REMARK 465 THR B 269 REMARK 465 VAL B 270 REMARK 465 ALA B 271 REMARK 465 VAL B 272 REMARK 465 GLY B 273 REMARK 465 GLY B 274 REMARK 465 HIS B 275 REMARK 465 THR B 276 REMARK 465 LEU B 277 REMARK 465 TYR B 278 REMARK 465 HIS B 279 REMARK 465 VAL B 280 REMARK 465 MET C 1 REMARK 465 SER C 2 REMARK 465 ASN C 3 REMARK 465 GLU C 4 REMARK 465 VAL C 5 REMARK 465 GLU C 6 REMARK 465 GLN C 7 REMARK 465 LYS C 8 REMARK 465 LYS C 9 REMARK 465 ASN C 10 REMARK 465 ILE C 11 REMARK 465 MET C 258 REMARK 465 ALA C 259 REMARK 465 ARG C 260 REMARK 465 PRO C 261 REMARK 465 ASP C 262 REMARK 465 MET C 263 REMARK 465 PHE C 264 REMARK 465 TYR C 265 REMARK 465 GLY C 266 REMARK 465 ASP C 267 REMARK 465 PRO C 268 REMARK 465 THR C 269 REMARK 465 VAL C 270 REMARK 465 ALA C 271 REMARK 465 VAL C 272 REMARK 465 GLY C 273 REMARK 465 GLY C 274 REMARK 465 HIS C 275 REMARK 465 THR C 276 REMARK 465 LEU C 277 REMARK 465 TYR C 278 REMARK 465 HIS C 279 REMARK 465 VAL C 280 REMARK 465 GLU C 324 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASN B 171 O HOH B 591 2.08 REMARK 500 OG SER A 211 O HOH A 406 2.09 REMARK 500 OD1 ASP A 168 O HOH A 452 2.13 REMARK 500 O HOH A 343 O HOH A 574 2.14 REMARK 500 N ALA B 42 O HOH B 337 2.15 REMARK 500 OD1 ASN B 85 O HOH B 371 2.16 REMARK 500 NE ARG A 83 O HOH A 340 2.17 REMARK 500 O HOH C 396 O HOH C 559 2.18 REMARK 500 O HOH A 340 O HOH A 352 2.18 REMARK 500 OG1 THR A 149 O HOH A 441 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG B 154 NE - CZ - NH2 ANGL. DEV. = -4.0 DEGREES REMARK 500 ARG C 154 NE - CZ - NH2 ANGL. DEV. = -6.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 290 -166.91 -116.41 REMARK 500 ASP A 301 116.45 -163.98 REMARK 500 ALA A 302 98.66 174.45 REMARK 500 ILE B 20 159.14 -48.09 REMARK 500 LEU B 28 -72.59 -51.91 REMARK 500 GLU B 30 28.73 -68.04 REMARK 500 VAL B 41 60.22 -107.53 REMARK 500 ALA B 50 0.05 -67.68 REMARK 500 ALA B 51 -3.30 -140.82 REMARK 500 PRO B 202 0.71 -67.19 REMARK 500 SER B 290 -166.01 -124.22 REMARK 500 ALA B 302 88.04 -175.12 REMARK 500 ILE C 20 155.93 -41.30 REMARK 500 GLU C 30 23.77 -69.81 REMARK 500 VAL C 41 61.91 -104.71 REMARK 500 ALA C 51 -6.02 -143.06 REMARK 500 SER C 290 -153.02 -119.20 REMARK 500 ALA C 302 75.95 -173.18 REMARK 500 PRO C 303 -33.80 -39.83 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2DFL RELATED DB: PDB REMARK 900 TETRAGONAL LEFT-HANDED FILAMENT DBREF 2Z43 A 1 324 UNP Q55075 RADA_SULSO 1 324 DBREF 2Z43 B 1 324 UNP Q55075 RADA_SULSO 1 324 DBREF 2Z43 C 1 324 UNP Q55075 RADA_SULSO 1 324 SEQRES 1 A 324 MET SER ASN GLU VAL GLU GLN LYS LYS ASN ILE LYS THR SEQRES 2 A 324 ILE ASN ASP LEU PRO GLY ILE SER GLN THR VAL ILE ASN SEQRES 3 A 324 LYS LEU ILE GLU ALA GLY TYR SER SER LEU GLU THR LEU SEQRES 4 A 324 ALA VAL ALA SER PRO GLN ASP LEU SER VAL ALA ALA GLY SEQRES 5 A 324 ILE PRO LEU SER THR ALA GLN LYS ILE ILE LYS GLU ALA SEQRES 6 A 324 ARG ASP ALA LEU ASP ILE ARG PHE LYS THR ALA LEU GLU SEQRES 7 A 324 VAL LYS LYS GLU ARG MET ASN VAL LYS LYS ILE SER THR SEQRES 8 A 324 GLY SER GLN ALA LEU ASP GLY LEU LEU ALA GLY GLY ILE SEQRES 9 A 324 GLU THR ARG THR MET THR GLU PHE PHE GLY GLU PHE GLY SEQRES 10 A 324 SER GLY LYS THR GLN LEU CYS HIS GLN LEU SER VAL ASN SEQRES 11 A 324 VAL GLN LEU PRO PRO GLU LYS GLY GLY LEU SER GLY LYS SEQRES 12 A 324 ALA VAL TYR ILE ASP THR GLU GLY THR PHE ARG TRP GLU SEQRES 13 A 324 ARG ILE GLU ASN MET ALA LYS ALA LEU GLY LEU ASP ILE SEQRES 14 A 324 ASP ASN VAL MET ASN ASN ILE TYR TYR ILE ARG ALA ILE SEQRES 15 A 324 ASN THR ASP HIS GLN ILE ALA ILE VAL ASP ASP LEU GLN SEQRES 16 A 324 GLU LEU VAL SER LYS ASP PRO SER ILE LYS LEU ILE VAL SEQRES 17 A 324 VAL ASP SER VAL THR SER HIS PHE ARG ALA GLU TYR PRO SEQRES 18 A 324 GLY ARG GLU ASN LEU ALA VAL ARG GLN GLN LYS LEU ASN SEQRES 19 A 324 LYS HIS LEU HIS GLN LEU THR ARG LEU ALA GLU VAL TYR SEQRES 20 A 324 ASP ILE ALA VAL ILE ILE THR ASN GLN VAL MET ALA ARG SEQRES 21 A 324 PRO ASP MET PHE TYR GLY ASP PRO THR VAL ALA VAL GLY SEQRES 22 A 324 GLY HIS THR LEU TYR HIS VAL PRO GLY ILE ARG ILE GLN SEQRES 23 A 324 LEU LYS LYS SER ARG GLY ASN ARG ARG ILE ALA ARG VAL SEQRES 24 A 324 VAL ASP ALA PRO HIS LEU PRO GLU GLY GLU VAL VAL PHE SEQRES 25 A 324 ALA LEU THR GLU GLU GLY ILE ARG ASP ALA GLU GLU SEQRES 1 B 324 MET SER ASN GLU VAL GLU GLN LYS LYS ASN ILE LYS THR SEQRES 2 B 324 ILE ASN ASP LEU PRO GLY ILE SER GLN THR VAL ILE ASN SEQRES 3 B 324 LYS LEU ILE GLU ALA GLY TYR SER SER LEU GLU THR LEU SEQRES 4 B 324 ALA VAL ALA SER PRO GLN ASP LEU SER VAL ALA ALA GLY SEQRES 5 B 324 ILE PRO LEU SER THR ALA GLN LYS ILE ILE LYS GLU ALA SEQRES 6 B 324 ARG ASP ALA LEU ASP ILE ARG PHE LYS THR ALA LEU GLU SEQRES 7 B 324 VAL LYS LYS GLU ARG MET ASN VAL LYS LYS ILE SER THR SEQRES 8 B 324 GLY SER GLN ALA LEU ASP GLY LEU LEU ALA GLY GLY ILE SEQRES 9 B 324 GLU THR ARG THR MET THR GLU PHE PHE GLY GLU PHE GLY SEQRES 10 B 324 SER GLY LYS THR GLN LEU CYS HIS GLN LEU SER VAL ASN SEQRES 11 B 324 VAL GLN LEU PRO PRO GLU LYS GLY GLY LEU SER GLY LYS SEQRES 12 B 324 ALA VAL TYR ILE ASP THR GLU GLY THR PHE ARG TRP GLU SEQRES 13 B 324 ARG ILE GLU ASN MET ALA LYS ALA LEU GLY LEU ASP ILE SEQRES 14 B 324 ASP ASN VAL MET ASN ASN ILE TYR TYR ILE ARG ALA ILE SEQRES 15 B 324 ASN THR ASP HIS GLN ILE ALA ILE VAL ASP ASP LEU GLN SEQRES 16 B 324 GLU LEU VAL SER LYS ASP PRO SER ILE LYS LEU ILE VAL SEQRES 17 B 324 VAL ASP SER VAL THR SER HIS PHE ARG ALA GLU TYR PRO SEQRES 18 B 324 GLY ARG GLU ASN LEU ALA VAL ARG GLN GLN LYS LEU ASN SEQRES 19 B 324 LYS HIS LEU HIS GLN LEU THR ARG LEU ALA GLU VAL TYR SEQRES 20 B 324 ASP ILE ALA VAL ILE ILE THR ASN GLN VAL MET ALA ARG SEQRES 21 B 324 PRO ASP MET PHE TYR GLY ASP PRO THR VAL ALA VAL GLY SEQRES 22 B 324 GLY HIS THR LEU TYR HIS VAL PRO GLY ILE ARG ILE GLN SEQRES 23 B 324 LEU LYS LYS SER ARG GLY ASN ARG ARG ILE ALA ARG VAL SEQRES 24 B 324 VAL ASP ALA PRO HIS LEU PRO GLU GLY GLU VAL VAL PHE SEQRES 25 B 324 ALA LEU THR GLU GLU GLY ILE ARG ASP ALA GLU GLU SEQRES 1 C 324 MET SER ASN GLU VAL GLU GLN LYS LYS ASN ILE LYS THR SEQRES 2 C 324 ILE ASN ASP LEU PRO GLY ILE SER GLN THR VAL ILE ASN SEQRES 3 C 324 LYS LEU ILE GLU ALA GLY TYR SER SER LEU GLU THR LEU SEQRES 4 C 324 ALA VAL ALA SER PRO GLN ASP LEU SER VAL ALA ALA GLY SEQRES 5 C 324 ILE PRO LEU SER THR ALA GLN LYS ILE ILE LYS GLU ALA SEQRES 6 C 324 ARG ASP ALA LEU ASP ILE ARG PHE LYS THR ALA LEU GLU SEQRES 7 C 324 VAL LYS LYS GLU ARG MET ASN VAL LYS LYS ILE SER THR SEQRES 8 C 324 GLY SER GLN ALA LEU ASP GLY LEU LEU ALA GLY GLY ILE SEQRES 9 C 324 GLU THR ARG THR MET THR GLU PHE PHE GLY GLU PHE GLY SEQRES 10 C 324 SER GLY LYS THR GLN LEU CYS HIS GLN LEU SER VAL ASN SEQRES 11 C 324 VAL GLN LEU PRO PRO GLU LYS GLY GLY LEU SER GLY LYS SEQRES 12 C 324 ALA VAL TYR ILE ASP THR GLU GLY THR PHE ARG TRP GLU SEQRES 13 C 324 ARG ILE GLU ASN MET ALA LYS ALA LEU GLY LEU ASP ILE SEQRES 14 C 324 ASP ASN VAL MET ASN ASN ILE TYR TYR ILE ARG ALA ILE SEQRES 15 C 324 ASN THR ASP HIS GLN ILE ALA ILE VAL ASP ASP LEU GLN SEQRES 16 C 324 GLU LEU VAL SER LYS ASP PRO SER ILE LYS LEU ILE VAL SEQRES 17 C 324 VAL ASP SER VAL THR SER HIS PHE ARG ALA GLU TYR PRO SEQRES 18 C 324 GLY ARG GLU ASN LEU ALA VAL ARG GLN GLN LYS LEU ASN SEQRES 19 C 324 LYS HIS LEU HIS GLN LEU THR ARG LEU ALA GLU VAL TYR SEQRES 20 C 324 ASP ILE ALA VAL ILE ILE THR ASN GLN VAL MET ALA ARG SEQRES 21 C 324 PRO ASP MET PHE TYR GLY ASP PRO THR VAL ALA VAL GLY SEQRES 22 C 324 GLY HIS THR LEU TYR HIS VAL PRO GLY ILE ARG ILE GLN SEQRES 23 C 324 LEU LYS LYS SER ARG GLY ASN ARG ARG ILE ALA ARG VAL SEQRES 24 C 324 VAL ASP ALA PRO HIS LEU PRO GLU GLY GLU VAL VAL PHE SEQRES 25 C 324 ALA LEU THR GLU GLU GLY ILE ARG ASP ALA GLU GLU FORMUL 4 HOH *1099(H2 O) HELIX 1 1 THR A 75 MET A 84 1 10 HELIX 2 2 SER A 93 LEU A 100 1 8 HELIX 3 3 GLY A 119 VAL A 131 1 13 HELIX 4 4 GLN A 132 LEU A 133 5 2 HELIX 5 5 PRO A 134 GLY A 138 5 5 HELIX 6 6 ARG A 154 LEU A 165 1 12 HELIX 7 7 ASP A 168 ASN A 175 1 8 HELIX 8 8 ASN A 183 ASP A 201 1 19 HELIX 9 9 THR A 213 TYR A 220 1 8 HELIX 10 10 ASN A 225 ASP A 248 1 24 HELIX 11 11 THR B 13 LEU B 17 5 5 HELIX 12 12 SER B 21 GLU B 30 1 10 HELIX 13 13 SER B 35 VAL B 41 1 7 HELIX 14 14 SER B 43 GLY B 52 1 10 HELIX 15 15 PRO B 54 LEU B 69 1 16 HELIX 16 16 THR B 75 MET B 84 1 10 HELIX 17 17 SER B 93 LEU B 100 1 8 HELIX 18 18 GLY B 119 VAL B 131 1 13 HELIX 19 19 GLN B 132 LEU B 133 5 2 HELIX 20 20 PRO B 134 GLY B 138 5 5 HELIX 21 21 ARG B 154 LEU B 165 1 12 HELIX 22 22 ASP B 168 ASN B 175 1 8 HELIX 23 23 ASN B 183 ASP B 201 1 19 HELIX 24 24 THR B 213 TYR B 220 1 8 HELIX 25 25 GLY B 222 GLU B 224 5 3 HELIX 26 26 ASN B 225 ASP B 248 1 24 HELIX 27 27 THR C 13 LEU C 17 5 5 HELIX 28 28 SER C 21 GLU C 30 1 10 HELIX 29 29 SER C 35 VAL C 41 1 7 HELIX 30 30 SER C 43 ALA C 50 1 8 HELIX 31 31 PRO C 54 LEU C 69 1 16 HELIX 32 32 THR C 75 MET C 84 1 10 HELIX 33 33 SER C 93 LEU C 100 1 8 HELIX 34 34 GLY C 119 VAL C 131 1 13 HELIX 35 35 GLN C 132 LEU C 133 5 2 HELIX 36 36 PRO C 134 GLY C 138 5 5 HELIX 37 37 ARG C 154 LEU C 165 1 12 HELIX 38 38 ASP C 168 ASN C 175 1 8 HELIX 39 39 ASN C 183 ASP C 201 1 19 HELIX 40 40 THR C 213 TYR C 220 1 8 HELIX 41 41 GLY C 222 GLU C 224 5 3 HELIX 42 42 ASN C 225 ASP C 248 1 24 SHEET 1 A 2 LYS A 88 ILE A 89 0 SHEET 2 A 2 ILE A 104 GLU A 105 -1 O ILE A 104 N ILE A 89 SHEET 1 B 9 ILE A 176 ARG A 180 0 SHEET 2 B 9 LYS A 143 ASP A 148 1 N ASP A 148 O ILE A 179 SHEET 3 B 9 ILE A 204 VAL A 209 1 O VAL A 208 N ILE A 147 SHEET 4 B 9 ALA A 250 GLN A 256 1 O ILE A 252 N ILE A 207 SHEET 5 B 9 MET A 109 GLY A 114 1 N THR A 110 O VAL A 251 SHEET 6 B 9 ILE A 283 LYS A 289 1 O ILE A 283 N GLU A 111 SHEET 7 B 9 ARG A 294 ASP A 301 -1 O ASP A 301 N ARG A 284 SHEET 8 B 9 GLY A 308 THR A 315 -1 O VAL A 310 N ALA A 297 SHEET 9 B 9 GLY A 318 ARG A 320 -1 O ARG A 320 N ALA A 313 SHEET 1 C 2 LYS B 88 ILE B 89 0 SHEET 2 C 2 ILE B 104 GLU B 105 -1 O ILE B 104 N ILE B 89 SHEET 1 D 9 ILE B 176 ARG B 180 0 SHEET 2 D 9 LYS B 143 ASP B 148 1 N TYR B 146 O TYR B 177 SHEET 3 D 9 ILE B 204 ASP B 210 1 O VAL B 208 N ILE B 147 SHEET 4 D 9 ALA B 250 GLN B 256 1 O ILE B 252 N ILE B 207 SHEET 5 D 9 THR B 108 GLY B 114 1 N THR B 110 O VAL B 251 SHEET 6 D 9 ILE B 283 LYS B 289 1 O ILE B 283 N GLU B 111 SHEET 7 D 9 ARG B 294 ASP B 301 -1 O VAL B 300 N ARG B 284 SHEET 8 D 9 GLU B 309 THR B 315 -1 O PHE B 312 N ARG B 295 SHEET 9 D 9 GLY B 318 ARG B 320 -1 O ARG B 320 N ALA B 313 SHEET 1 E 2 LYS C 88 ILE C 89 0 SHEET 2 E 2 ILE C 104 GLU C 105 -1 O ILE C 104 N ILE C 89 SHEET 1 F 9 ILE C 176 ARG C 180 0 SHEET 2 F 9 LYS C 143 ASP C 148 1 N TYR C 146 O TYR C 177 SHEET 3 F 9 ILE C 204 ASP C 210 1 O VAL C 208 N VAL C 145 SHEET 4 F 9 ALA C 250 GLN C 256 1 O ALA C 250 N LYS C 205 SHEET 5 F 9 THR C 108 GLY C 114 1 N THR C 110 O VAL C 251 SHEET 6 F 9 ILE C 283 LYS C 289 1 O ILE C 283 N GLU C 111 SHEET 7 F 9 ARG C 294 ASP C 301 -1 O VAL C 300 N ARG C 284 SHEET 8 F 9 GLU C 309 THR C 315 -1 O PHE C 312 N ARG C 295 SHEET 9 F 9 GLY C 318 ASP C 321 -1 O ARG C 320 N ALA C 313 CRYST1 99.553 99.553 99.412 90.00 90.00 120.00 P 31 9 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010045 0.005799 0.000000 0.00000 SCALE2 0.000000 0.011599 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010059 0.00000