HEADER ELECTRON TRANSPORT 13-JUN-07 2Z47 TITLE THE Y66L MUTANT OF TETRAHEME CYTOCHROME C3 FROM DESULFOVIBRIO VULGARIS TITLE 2 MIYAZAKI F COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYTOCHROME C3; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DESULFOVIBRIO VULGARIS STR. 'MIYAZAKI F'; SOURCE 3 ORGANISM_TAXID: 883; SOURCE 4 STRAIN: MIYAZAKI; SOURCE 5 EXPRESSION_SYSTEM: SHEWANELLA; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 22 KEYWDS ELECTRON TRANSPORT, HEME, IRON, METAL-BINDING, PERIPLASMIC, SULFATE KEYWDS 2 RESPIRATION, TRANSPORT EXPDTA X-RAY DIFFRACTION AUTHOR Y.HIGUCHI,H.KOMORI REVDAT 5 01-NOV-23 2Z47 1 REMARK REVDAT 4 10-NOV-21 2Z47 1 SEQADV REVDAT 3 02-OCT-19 2Z47 1 COMPND REMARK HET HETNAM REVDAT 3 2 1 HETSYN FORMUL LINK ATOM REVDAT 2 24-FEB-09 2Z47 1 VERSN REVDAT 1 17-JUN-08 2Z47 0 JRNL AUTH Y.TAKAYAMA,H.KOMORI,K.MORITA,Y.HIGUCHI,H.AKUTSU JRNL TITL STRUCTURES OF NONCOORDINATED AROMATIC RESIDUE MUTANTS IN JRNL TITL 2 TETRAHEME CYTOCHROME C3 FROM DESULFOVIBRIO VULGARIS MIYAZAKI JRNL TITL 3 F JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.2 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.83 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 587651.710 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 33331 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.184 REMARK 3 FREE R VALUE : 0.216 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3330 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.004 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.70 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.60 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 4967 REMARK 3 BIN R VALUE (WORKING SET) : 0.2000 REMARK 3 BIN FREE R VALUE : 0.2340 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 10.10 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 560 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.010 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1594 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 344 REMARK 3 SOLVENT ATOMS : 231 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 15.60 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 17.00 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.46000 REMARK 3 B22 (A**2) : 1.11000 REMARK 3 B33 (A**2) : 0.35000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.57000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.16 REMARK 3 ESD FROM SIGMAA (A) : 0.04 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.19 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.05 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.015 REMARK 3 BOND ANGLES (DEGREES) : 4.800 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 23.40 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.070 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.45 REMARK 3 BSOL : 70.99 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : DNA-RNA_REP.PARAM REMARK 3 PARAMETER FILE 3 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 4 : ION.PARAM REMARK 3 PARAMETER FILE 5 : PARAM19X_MOD.HEME REMARK 3 PARAMETER FILE 6 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : DNA-RNA.TOP REMARK 3 TOPOLOGY FILE 3 : WATER.TOP REMARK 3 TOPOLOGY FILE 4 : ION.TOP REMARK 3 TOPOLOGY FILE 5 : TOPH19.HEM REMARK 3 TOPOLOGY FILE 6 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: BULK SOLVENT MODEL USED REMARK 4 REMARK 4 2Z47 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 15-JUN-07. REMARK 100 THE DEPOSITION ID IS D_1000027499. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-JUN-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL41XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 33331 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 30.830 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 1J0O REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.94 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.79 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 70% MPD, PH 6.0, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 34.77900 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 SG CYS A 30 CBB HEC A 1001 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 2 -153.04 -70.32 REMARK 500 CYS A 51 -132.89 -100.88 REMARK 500 CYS B2051 -137.82 -113.29 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEC A1001 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 22 NE2 REMARK 620 2 HEC A1001 NA 91.3 REMARK 620 3 HEC A1001 NB 90.1 91.1 REMARK 620 4 HEC A1001 NC 91.8 176.9 89.5 REMARK 620 5 HEC A1001 ND 88.5 91.1 177.4 88.4 REMARK 620 6 HIS A 34 NE2 178.2 87.4 88.6 89.5 92.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEC A1003 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 25 NE2 REMARK 620 2 HEC A1003 NA 88.8 REMARK 620 3 HEC A1003 NB 90.0 89.6 REMARK 620 4 HEC A1003 NC 89.8 178.7 90.6 REMARK 620 5 HEC A1003 ND 86.1 90.0 176.1 89.8 REMARK 620 6 HIS A 83 NE2 177.9 90.8 92.1 90.5 91.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEC A1002 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 35 NE2 REMARK 620 2 HEC A1002 NA 88.9 REMARK 620 3 HEC A1002 NB 91.4 88.8 REMARK 620 4 HEC A1002 NC 90.1 179.1 91.1 REMARK 620 5 HEC A1002 ND 89.1 91.1 179.5 89.0 REMARK 620 6 HIS A 52 NE2 177.8 89.2 89.6 91.8 89.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEC A1004 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 70 NE2 REMARK 620 2 HEC A1004 NA 89.9 REMARK 620 3 HEC A1004 NB 87.8 90.9 REMARK 620 4 HEC A1004 NC 91.3 178.9 89.0 REMARK 620 5 HEC A1004 ND 86.3 90.5 173.9 89.8 REMARK 620 6 HIS A 106 NE2 176.5 93.0 94.3 85.9 91.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEC B3001 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B2022 NE2 REMARK 620 2 HEC B3001 NA 92.1 REMARK 620 3 HEC B3001 NB 92.6 90.2 REMARK 620 4 HEC B3001 NC 90.8 177.0 90.6 REMARK 620 5 HEC B3001 ND 88.1 90.3 179.2 88.8 REMARK 620 6 HIS B2034 NE2 177.4 85.3 87.9 91.8 91.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEC B3003 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B2025 NE2 REMARK 620 2 HEC B3003 NA 89.0 REMARK 620 3 HEC B3003 NB 87.5 88.9 REMARK 620 4 HEC B3003 NC 91.5 178.6 89.9 REMARK 620 5 HEC B3003 ND 90.5 91.7 177.9 89.5 REMARK 620 6 HIS B2083 NE2 178.7 89.7 92.6 89.7 89.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEC B3002 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B2035 NE2 REMARK 620 2 HEC B3002 NA 91.6 REMARK 620 3 HEC B3002 NB 91.0 90.1 REMARK 620 4 HEC B3002 NC 89.6 178.7 89.2 REMARK 620 5 HEC B3002 ND 89.4 91.0 178.8 89.7 REMARK 620 6 HIS B2052 NE2 177.7 86.5 90.2 92.4 89.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEC B3004 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B2070 NE2 REMARK 620 2 HEC B3004 NA 89.3 REMARK 620 3 HEC B3004 NB 89.8 91.1 REMARK 620 4 HEC B3004 NC 95.2 175.4 89.5 REMARK 620 5 HEC B3004 ND 86.4 89.5 176.2 90.2 REMARK 620 6 HIS B2106 NE2 176.1 91.8 93.9 83.6 89.8 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEM A 1004 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEM A 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEM A 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEM A 1003 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEM B 3004 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEM B 3002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEM B 3001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEM B 3003 DBREF 2Z47 A 1 107 UNP P00132 CYC3_DESVM 24 130 DBREF 2Z47 B 2001 2107 UNP P00132 CYC3_DESVM 24 130 SEQADV 2Z47 LEU A 66 UNP P00132 TYR 89 ENGINEERED MUTATION SEQADV 2Z47 LEU B 2066 UNP P00132 TYR 89 ENGINEERED MUTATION SEQRES 1 A 107 ALA PRO LYS ALA PRO ALA ASP GLY LEU LYS MET ASP LYS SEQRES 2 A 107 THR LYS GLN PRO VAL VAL PHE ASN HIS SER THR HIS LYS SEQRES 3 A 107 ALA VAL LYS CYS GLY ASP CYS HIS HIS PRO VAL ASN GLY SEQRES 4 A 107 LYS GLU ASP TYR GLN LYS CYS ALA THR ALA GLY CYS HIS SEQRES 5 A 107 ASP ASN MET ASP LYS LYS ASP LYS SER ALA LYS GLY TYR SEQRES 6 A 107 LEU HIS ALA MET HIS ASP LYS GLY THR LYS PHE LYS SER SEQRES 7 A 107 CYS VAL GLY CYS HIS LEU GLU THR ALA GLY ALA ASP ALA SEQRES 8 A 107 ALA LYS LYS LYS GLU LEU THR GLY CYS LYS GLY SER LYS SEQRES 9 A 107 CYS HIS SER SEQRES 1 B 107 ALA PRO LYS ALA PRO ALA ASP GLY LEU LYS MET ASP LYS SEQRES 2 B 107 THR LYS GLN PRO VAL VAL PHE ASN HIS SER THR HIS LYS SEQRES 3 B 107 ALA VAL LYS CYS GLY ASP CYS HIS HIS PRO VAL ASN GLY SEQRES 4 B 107 LYS GLU ASP TYR GLN LYS CYS ALA THR ALA GLY CYS HIS SEQRES 5 B 107 ASP ASN MET ASP LYS LYS ASP LYS SER ALA LYS GLY TYR SEQRES 6 B 107 LEU HIS ALA MET HIS ASP LYS GLY THR LYS PHE LYS SER SEQRES 7 B 107 CYS VAL GLY CYS HIS LEU GLU THR ALA GLY ALA ASP ALA SEQRES 8 B 107 ALA LYS LYS LYS GLU LEU THR GLY CYS LYS GLY SER LYS SEQRES 9 B 107 CYS HIS SER HET HEC A1004 43 HET HEC A1002 43 HET HEC A1001 43 HET HEC A1003 43 HET HEC B3004 43 HET HEC B3002 43 HET HEC B3001 43 HET HEC B3003 43 HETNAM HEC HEME C FORMUL 3 HEC 8(C34 H34 FE N4 O4) FORMUL 11 HOH *231(H2 O) HELIX 1 1 ASN A 21 LYS A 26 5 6 HELIX 2 2 LYS A 29 HIS A 34 1 6 HELIX 3 3 GLY A 64 ASP A 71 1 8 HELIX 4 4 SER A 78 GLY A 88 1 11 HELIX 5 5 ASP A 90 GLY A 99 1 10 HELIX 6 6 ASN B 2021 LYS B 2026 5 6 HELIX 7 7 LYS B 2029 HIS B 2034 1 6 HELIX 8 8 GLY B 2064 ASP B 2071 1 8 HELIX 9 9 SER B 2078 GLY B 2088 1 11 HELIX 10 10 ASP B 2090 GLY B 2099 1 10 SHEET 1 A 2 LEU A 9 MET A 11 0 SHEET 2 A 2 VAL A 18 PHE A 20 -1 O PHE A 20 N LEU A 9 SHEET 1 B 2 PRO A 36 VAL A 37 0 SHEET 2 B 2 LYS A 40 GLU A 41 -1 O LYS A 40 N VAL A 37 SHEET 1 C 2 LEU B2009 MET B2011 0 SHEET 2 C 2 VAL B2018 PHE B2020 -1 O PHE B2020 N LEU B2009 SHEET 1 D 2 PRO B2036 VAL B2037 0 SHEET 2 D 2 LYS B2040 GLU B2041 -1 O LYS B2040 N VAL B2037 LINK SG CYS A 30 CAB HEC A1001 1555 1555 1.82 LINK SG CYS A 33 CAC HEC A1001 1555 1555 1.83 LINK SG CYS A 46 CAB HEC A1002 1555 1555 1.84 LINK SG CYS A 51 CAC HEC A1002 1555 1555 1.83 LINK SG CYS A 79 CAB HEC A1003 1555 1555 1.83 LINK SG CYS A 82 CAC HEC A1003 1555 1555 1.83 LINK SG CYS A 100 CAB HEC A1004 1555 1555 1.83 LINK SG CYS A 105 CAC HEC A1004 1555 1555 1.83 LINK SG CYS B2030 CAB HEC B3001 1555 1555 1.83 LINK SG CYS B2033 CAC HEC B3001 1555 1555 1.84 LINK SG CYS B2046 CAB HEC B3002 1555 1555 1.84 LINK SG CYS B2051 CAC HEC B3002 1555 1555 1.83 LINK SG CYS B2079 CAB HEC B3003 1555 1555 1.83 LINK SG CYS B2082 CAC HEC B3003 1555 1555 1.84 LINK SG CYS B2100 CAB HEC B3004 1555 1555 1.84 LINK SG CYS B2105 CAC HEC B3004 1555 1555 1.84 LINK NE2 HIS A 22 FE HEC A1001 1555 1555 2.00 LINK NE2 HIS A 25 FE HEC A1003 1555 1555 1.99 LINK NE2 HIS A 34 FE HEC A1001 1555 1555 2.00 LINK NE2 HIS A 35 FE HEC A1002 1555 1555 1.98 LINK NE2 HIS A 52 FE HEC A1002 1555 1555 1.98 LINK NE2 HIS A 70 FE HEC A1004 1555 1555 1.96 LINK NE2 HIS A 83 FE HEC A1003 1555 1555 2.02 LINK NE2 HIS A 106 FE HEC A1004 1555 1555 2.00 LINK NE2 HIS B2022 FE HEC B3001 1555 1555 2.01 LINK NE2 HIS B2025 FE HEC B3003 1555 1555 1.99 LINK NE2 HIS B2034 FE HEC B3001 1555 1555 1.97 LINK NE2 HIS B2035 FE HEC B3002 1555 1555 1.97 LINK NE2 HIS B2052 FE HEC B3002 1555 1555 2.00 LINK NE2 HIS B2070 FE HEC B3004 1555 1555 1.99 LINK NE2 HIS B2083 FE HEC B3003 1555 1555 2.00 LINK NE2 HIS B2106 FE HEC B3004 1555 1555 2.01 SITE 1 AC1 18 MET A 11 ASP A 12 LYS A 13 THR A 14 SITE 2 AC1 18 LYS A 15 GLN A 16 PRO A 17 LYS A 57 SITE 3 AC1 18 TYR A 65 LEU A 66 HIS A 70 HIS A 83 SITE 4 AC1 18 LEU A 97 THR A 98 GLY A 99 CYS A 100 SITE 5 AC1 18 CYS A 105 HIS A 106 SITE 1 AC2 18 HIS A 35 ASP A 42 GLN A 44 LYS A 45 SITE 2 AC2 18 CYS A 46 CYS A 51 HIS A 52 HIS A 67 SITE 3 AC2 18 ALA A 68 THR A 74 LYS A 75 PHE A 76 SITE 4 AC2 18 HOH A1034 HOH A1049 HOH A1087 HOH A1090 SITE 5 AC2 18 HOH A1091 HOH A1099 SITE 1 AC3 14 PRO A 2 LYS A 3 PRO A 5 PHE A 20 SITE 2 AC3 14 HIS A 22 CYS A 30 CYS A 33 HIS A 34 SITE 3 AC3 14 TYR A 43 LYS A 45 CYS A 46 HOH A1007 SITE 4 AC3 14 HOH A1020 HOH A1021 SITE 1 AC4 10 ASN A 21 THR A 24 HIS A 25 CYS A 79 SITE 2 AC4 10 CYS A 82 HIS A 83 LYS A 93 LYS A 104 SITE 3 AC4 10 HOH A1012 HOH A1064 SITE 1 AC5 17 MET B2011 ASP B2012 LYS B2013 THR B2014 SITE 2 AC5 17 LYS B2015 GLN B2016 PRO B2017 TYR B2065 SITE 3 AC5 17 HIS B2070 HIS B2083 LEU B2097 THR B2098 SITE 4 AC5 17 GLY B2099 CYS B2100 CYS B2105 HIS B2106 SITE 5 AC5 17 HOH B3089 SITE 1 AC6 16 HIS B2035 ASP B2042 GLN B2044 CYS B2046 SITE 2 AC6 16 CYS B2051 HIS B2052 HIS B2067 ALA B2068 SITE 3 AC6 16 THR B2074 LYS B2075 PHE B2076 HOH B3046 SITE 4 AC6 16 HOH B3054 HOH B3067 HOH B3074 HOH B3110 SITE 1 AC7 17 PRO B2002 LYS B2003 ALA B2004 PRO B2005 SITE 2 AC7 17 MET B2011 PHE B2020 HIS B2022 CYS B2030 SITE 3 AC7 17 CYS B2033 HIS B2034 TYR B2043 LYS B2045 SITE 4 AC7 17 CYS B2046 HOH B3010 HOH B3052 HOH B3069 SITE 5 AC7 17 HOH B3128 SITE 1 AC8 14 ASN B2021 THR B2024 HIS B2025 LYS B2077 SITE 2 AC8 14 CYS B2079 CYS B2082 HIS B2083 LYS B2093 SITE 3 AC8 14 LYS B2104 HOH B3006 HOH B3044 HOH B3049 SITE 4 AC8 14 HOH B3068 HOH B3070 CRYST1 34.424 69.558 53.749 90.00 92.73 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.029050 0.000000 0.001386 0.00000 SCALE2 0.000000 0.014376 0.000000 0.00000 SCALE3 0.000000 0.000000 0.018626 0.00000