data_2Z59 # _entry.id 2Z59 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.356 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2Z59 pdb_00002z59 10.2210/pdb2z59/pdb RCSB RCSB027537 ? ? WWPDB D_1000027537 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 1D3Z 'UBIQUITIN NMR STRUCTURE' unspecified PDB 2HTH 'Structural basis for ubiquitin recognition by the human EAP45/ESCRT-II GLUE domain' unspecified PDB 2R2Y 'crystal structure of mRpn13 Pru' unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2Z59 _pdbx_database_status.recvd_initial_deposition_date 2007-07-01 _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr REL _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Chen, X.' 1 'Schreiner, P.' 2 'Groll, M.' 3 'Walters, K.J.' 4 # _citation.id primary _citation.title 'Ubiquitin docking at the proteasome through a novel pleckstrin-homology domain interaction.' _citation.journal_abbrev Nature _citation.journal_volume 453 _citation.page_first 548 _citation.page_last 552 _citation.year 2008 _citation.journal_id_ASTM NATUAS _citation.country UK _citation.journal_id_ISSN 0028-0836 _citation.journal_id_CSD 0006 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 18497827 _citation.pdbx_database_id_DOI 10.1038/nature06924 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Schreiner, P.' 1 ? primary 'Chen, X.' 2 ? primary 'Husnjak, K.' 3 ? primary 'Randles, L.' 4 ? primary 'Zhang, N.' 5 ? primary 'Elsasser, S.' 6 ? primary 'Finley, D.' 7 ? primary 'Dikic, I.' 8 ? primary 'Walters, K.J.' 9 ? primary 'Groll, M.' 10 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Protein ADRM1' 12787.631 1 ? ? 'residues 22-130' ? 2 polymer man Ubiquitin 8576.831 1 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Proteasome Component Rpn13, Adhesion-regulating molecule 1, 110 kDa cell membrane glycoprotein, Gp110, ARM-1' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;YLVEFRAGKMSLKGTTVTPDKRKGLVYIQQTDDSLIHFCWKDRTSGTVEDDLIIFPDDCEFKRVPQCPSGRVYVLKFKAG SKRLFFWMQEPKTDQDEEHCRKVNECLNN ; ;YLVEFRAGKMSLKGTTVTPDKRKGLVYIQQTDDSLIHFCWKDRTSGTVEDDLIIFPDDCEFKRVPQCPSGRVYVLKFKAG SKRLFFWMQEPKTDQDEEHCRKVNECLNN ; A ? 2 'polypeptide(L)' no no MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG B ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 TYR n 1 2 LEU n 1 3 VAL n 1 4 GLU n 1 5 PHE n 1 6 ARG n 1 7 ALA n 1 8 GLY n 1 9 LYS n 1 10 MET n 1 11 SER n 1 12 LEU n 1 13 LYS n 1 14 GLY n 1 15 THR n 1 16 THR n 1 17 VAL n 1 18 THR n 1 19 PRO n 1 20 ASP n 1 21 LYS n 1 22 ARG n 1 23 LYS n 1 24 GLY n 1 25 LEU n 1 26 VAL n 1 27 TYR n 1 28 ILE n 1 29 GLN n 1 30 GLN n 1 31 THR n 1 32 ASP n 1 33 ASP n 1 34 SER n 1 35 LEU n 1 36 ILE n 1 37 HIS n 1 38 PHE n 1 39 CYS n 1 40 TRP n 1 41 LYS n 1 42 ASP n 1 43 ARG n 1 44 THR n 1 45 SER n 1 46 GLY n 1 47 THR n 1 48 VAL n 1 49 GLU n 1 50 ASP n 1 51 ASP n 1 52 LEU n 1 53 ILE n 1 54 ILE n 1 55 PHE n 1 56 PRO n 1 57 ASP n 1 58 ASP n 1 59 CYS n 1 60 GLU n 1 61 PHE n 1 62 LYS n 1 63 ARG n 1 64 VAL n 1 65 PRO n 1 66 GLN n 1 67 CYS n 1 68 PRO n 1 69 SER n 1 70 GLY n 1 71 ARG n 1 72 VAL n 1 73 TYR n 1 74 VAL n 1 75 LEU n 1 76 LYS n 1 77 PHE n 1 78 LYS n 1 79 ALA n 1 80 GLY n 1 81 SER n 1 82 LYS n 1 83 ARG n 1 84 LEU n 1 85 PHE n 1 86 PHE n 1 87 TRP n 1 88 MET n 1 89 GLN n 1 90 GLU n 1 91 PRO n 1 92 LYS n 1 93 THR n 1 94 ASP n 1 95 GLN n 1 96 ASP n 1 97 GLU n 1 98 GLU n 1 99 HIS n 1 100 CYS n 1 101 ARG n 1 102 LYS n 1 103 VAL n 1 104 ASN n 1 105 GLU n 1 106 CYS n 1 107 LEU n 1 108 ASN n 1 109 ASN n 2 1 MET n 2 2 GLN n 2 3 ILE n 2 4 PHE n 2 5 VAL n 2 6 LYS n 2 7 THR n 2 8 LEU n 2 9 THR n 2 10 GLY n 2 11 LYS n 2 12 THR n 2 13 ILE n 2 14 THR n 2 15 LEU n 2 16 GLU n 2 17 VAL n 2 18 GLU n 2 19 PRO n 2 20 SER n 2 21 ASP n 2 22 THR n 2 23 ILE n 2 24 GLU n 2 25 ASN n 2 26 VAL n 2 27 LYS n 2 28 ALA n 2 29 LYS n 2 30 ILE n 2 31 GLN n 2 32 ASP n 2 33 LYS n 2 34 GLU n 2 35 GLY n 2 36 ILE n 2 37 PRO n 2 38 PRO n 2 39 ASP n 2 40 GLN n 2 41 GLN n 2 42 ARG n 2 43 LEU n 2 44 ILE n 2 45 PHE n 2 46 ALA n 2 47 GLY n 2 48 LYS n 2 49 GLN n 2 50 LEU n 2 51 GLU n 2 52 ASP n 2 53 GLY n 2 54 ARG n 2 55 THR n 2 56 LEU n 2 57 SER n 2 58 ASP n 2 59 TYR n 2 60 ASN n 2 61 ILE n 2 62 GLN n 2 63 LYS n 2 64 GLU n 2 65 SER n 2 66 THR n 2 67 LEU n 2 68 HIS n 2 69 LEU n 2 70 VAL n 2 71 LEU n 2 72 ARG n 2 73 LEU n 2 74 ARG n 2 75 GLY n 2 76 GLY n # loop_ _entity_src_gen.entity_id _entity_src_gen.pdbx_src_id _entity_src_gen.pdbx_alt_source_flag _entity_src_gen.pdbx_seq_type _entity_src_gen.pdbx_beg_seq_num _entity_src_gen.pdbx_end_seq_num _entity_src_gen.gene_src_common_name _entity_src_gen.gene_src_genus _entity_src_gen.pdbx_gene_src_gene _entity_src_gen.gene_src_species _entity_src_gen.gene_src_strain _entity_src_gen.gene_src_tissue _entity_src_gen.gene_src_tissue_fraction _entity_src_gen.gene_src_details _entity_src_gen.pdbx_gene_src_fragment _entity_src_gen.pdbx_gene_src_scientific_name _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id _entity_src_gen.pdbx_gene_src_variant _entity_src_gen.pdbx_gene_src_cell_line _entity_src_gen.pdbx_gene_src_atcc _entity_src_gen.pdbx_gene_src_organ _entity_src_gen.pdbx_gene_src_organelle _entity_src_gen.pdbx_gene_src_cell _entity_src_gen.pdbx_gene_src_cellular_location _entity_src_gen.host_org_common_name _entity_src_gen.pdbx_host_org_scientific_name _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id _entity_src_gen.host_org_genus _entity_src_gen.pdbx_host_org_gene _entity_src_gen.pdbx_host_org_organ _entity_src_gen.host_org_species _entity_src_gen.pdbx_host_org_tissue _entity_src_gen.pdbx_host_org_tissue_fraction _entity_src_gen.pdbx_host_org_strain _entity_src_gen.pdbx_host_org_variant _entity_src_gen.pdbx_host_org_cell_line _entity_src_gen.pdbx_host_org_atcc _entity_src_gen.pdbx_host_org_culture_collection _entity_src_gen.pdbx_host_org_cell _entity_src_gen.pdbx_host_org_organelle _entity_src_gen.pdbx_host_org_cellular_location _entity_src_gen.pdbx_host_org_vector_type _entity_src_gen.pdbx_host_org_vector _entity_src_gen.host_org_details _entity_src_gen.expression_system_id _entity_src_gen.plasmid_name _entity_src_gen.plasmid_details _entity_src_gen.pdbx_description 1 1 sample ? ? ? mouse ? Adrm1 ? ? ? ? ? ? 'Mus musculus' 10090 ? ? ? ? ? ? ? ? 'Escherichia coli' 562 ? ? ? ? ? ? 'BL21(DE3)pLysS' ? ? ? ? ? ? ? pRSET ? ? ? ? ? ? 2 1 sample ? ? ? human ? 'Rps27a, Uba80, Ubcep1' ? ? ? ? ? ? 'Homo sapiens' 9606 ? ? ? ? ? ? ? ? 'Escherichia coli' 562 ? ? ? ? ? ? 'BL21(DE3)' ? ? ? ? ? ? ? pET ? ? ? ? ? ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP ADRM1_MOUSE Q9JKV1 1 ;YLVEFRAGKMSLKGTTVTPDKRKGLVYIQQTDDSLIHFCWKDRTSGTVEDDLIIFPDDCEFKRVPQCPSGRVYVLKFKAG SKRLFFWMQEPKTDQDEEHCRKVNECLNN ; 22 ? 2 UNP UBIQ_UBIQ_HUMAN P62988 2 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 1 ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2Z59 A 1 ? 109 ? Q9JKV1 22 ? 130 ? 22 130 2 2 2Z59 B 1 ? 76 ? P62988 1 ? 76 ? 1 76 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.solution_id 1 1 'HNCACB, HNCA/HN(CO)CA' 1 2 1 3D_15N-separated_NOESY 2 3 1 3D_15N-separated_NOESY 3 4 1 'HSQC titration' 4 5 1 'HSQC titration' 5 6 1 'HSQC titration' 6 # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 298 _pdbx_nmr_exptl_sample_conditions.pressure ambient _pdbx_nmr_exptl_sample_conditions.pH 6.5 _pdbx_nmr_exptl_sample_conditions.ionic_strength ? _pdbx_nmr_exptl_sample_conditions.pressure_units . _pdbx_nmr_exptl_sample_conditions.temperature_units K # loop_ _pdbx_nmr_sample_details.solution_id _pdbx_nmr_sample_details.contents _pdbx_nmr_sample_details.solvent_system 1 '0.6mM MmRpn13 U-15N, 13C; U-70% 2H; 20mM phosphate buffer; 30mM NaCl; 3mM DTT; 90% H2O, 10% D2O' '90% H2O/10% D2O' 2 '0.6mM MmRpn13 U-15N; U-50% 2H; 20mM phosphate buffer; 30mM NaCl; 3mM DTT; 90% H2O, 10% D2O' '90% H2O/10% D2O' 3 '0.6mM MmRpn13 U-15N, 13C; U-70% 2H; 0.6mM ubiquitin; 20mM phosphate buffer; 30mM NaCl; 3mM DTT; 90% H2O, 10% D2O' '90% H2O/10% D2O' 4 '0.4mM MmRpn13 U-15N; 20mM phosphate buffer; 30mM NaCl; 3mM DTT; 90% H2O, 10% D2O' '90% H2O/10% D2O' 5 '0.4mM ubiquitin U-15N; 20mM phosphate buffer; 30mM NaCl; 3mM DTT; 90% H2O, 10% D2O' '90% H2O/10% D2O' 6 '0.4mM MmRpn13 U-13C; 20mM phosphate buffer; 30mM NaCl; 3mM DTT; 100% D2O' '100% D2O' # loop_ _pdbx_nmr_spectrometer.spectrometer_id _pdbx_nmr_spectrometer.model _pdbx_nmr_spectrometer.manufacturer _pdbx_nmr_spectrometer.field_strength _pdbx_nmr_spectrometer.type 1 INOVA Varian 600 ? 2 INOVA Varian 800 ? # _pdbx_nmr_refine.entry_id 2Z59 _pdbx_nmr_refine.method 'High Ambiguity Driven protein-protein DOCKing' _pdbx_nmr_refine.details ;The strctures are based on interaction data such as chemical shift perturbation data resulting from NMR titration experiments and intermolecular NOE. ; _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_ensemble.entry_id 2Z59 _pdbx_nmr_ensemble.conformers_calculated_total_number 200 _pdbx_nmr_ensemble.conformers_submitted_total_number 10 _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the lowest energy' _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 2Z59 _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'lowest energy' # loop_ _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors _pdbx_nmr_software.ordinal processing NMRPipe 2006 'Frank Delaglio, Stephan Grzesiek, Guang Zhu, Geerten W. Vuister, John Pfeifer and Ad Bax' 1 'data analysis' XEASY 1996 'Tai-he Xia and Christian Bartels' 2 'structure solution' HADDOCK 1.3 'Cyril Dominguez, Rolf Boelens, Alexandre M.J.J.Bonvin' 3 refinement HADDOCK 1.3 'Cyril Dominguez, Rolf Boelens, Alexandre M.J.J.Bonvin' 4 # _exptl.entry_id 2Z59 _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? # _struct.entry_id 2Z59 _struct.title 'Complex Structures of Mouse Rpn13 (22-130aa) and ubiquitin' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2Z59 _struct_keywords.pdbx_keywords 'PROTEIN TRANSPORT' _struct_keywords.text 'Proteasome, PH domain, PROTEIN TRANSPORT' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 LYS A 92 ? ASP A 94 ? LYS A 113 ASP A 115 5 ? 3 HELX_P HELX_P2 2 GLN A 95 ? ASN A 109 ? GLN A 116 ASN A 130 1 ? 15 HELX_P HELX_P3 3 THR B 22 ? GLU B 34 ? THR B 22 GLU B 34 1 ? 13 HELX_P HELX_P4 4 PRO B 37 ? ASP B 39 ? PRO B 37 ASP B 39 5 ? 3 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 5 ? B ? 5 ? C ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel B 4 5 ? anti-parallel C 1 2 ? anti-parallel C 2 3 ? parallel C 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 THR A 16 ? PRO A 19 ? THR A 37 PRO A 40 A 2 PHE A 5 ? LYS A 13 ? PHE A 26 LYS A 34 A 3 GLY A 24 ? GLN A 30 ? GLY A 45 GLN A 51 A 4 ILE A 36 ? ASP A 42 ? ILE A 57 ASP A 63 A 5 VAL A 48 ? ILE A 54 ? VAL A 69 ILE A 75 B 1 THR A 16 ? PRO A 19 ? THR A 37 PRO A 40 B 2 PHE A 5 ? LYS A 13 ? PHE A 26 LYS A 34 B 3 ARG A 83 ? MET A 88 ? ARG A 104 MET A 109 B 4 VAL A 72 ? PHE A 77 ? VAL A 93 PHE A 98 B 5 CYS A 59 ? ARG A 63 ? CYS A 80 ARG A 84 C 1 THR B 12 ? GLU B 16 ? THR B 12 GLU B 16 C 2 GLN B 2 ? THR B 7 ? GLN B 2 THR B 7 C 3 THR B 66 ? LEU B 71 ? THR B 66 LEU B 71 C 4 GLN B 41 ? ILE B 44 ? GLN B 41 ILE B 44 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O THR A 18 ? O THR A 39 N SER A 11 ? N SER A 32 A 2 3 N PHE A 5 ? N PHE A 26 O VAL A 26 ? O VAL A 47 A 3 4 N LEU A 25 ? N LEU A 46 O LYS A 41 ? O LYS A 62 A 4 5 N ILE A 36 ? N ILE A 57 O ILE A 54 ? O ILE A 75 B 1 2 O THR A 18 ? O THR A 39 N SER A 11 ? N SER A 32 B 2 3 N GLY A 8 ? N GLY A 29 O TRP A 87 ? O TRP A 108 B 3 4 O PHE A 86 ? O PHE A 107 N TYR A 73 ? N TYR A 94 B 4 5 O VAL A 74 ? O VAL A 95 N LYS A 62 ? N LYS A 83 C 1 2 O ILE B 13 ? O ILE B 13 N VAL B 5 ? N VAL B 5 C 2 3 N LYS B 6 ? N LYS B 6 O LEU B 67 ? O LEU B 67 C 3 4 O VAL B 70 ? O VAL B 70 N ARG B 42 ? N ARG B 42 # _database_PDB_matrix.entry_id 2Z59 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2Z59 _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 TYR 1 22 22 TYR TYR A . n A 1 2 LEU 2 23 23 LEU LEU A . n A 1 3 VAL 3 24 24 VAL VAL A . n A 1 4 GLU 4 25 25 GLU GLU A . n A 1 5 PHE 5 26 26 PHE PHE A . n A 1 6 ARG 6 27 27 ARG ARG A . n A 1 7 ALA 7 28 28 ALA ALA A . n A 1 8 GLY 8 29 29 GLY GLY A . n A 1 9 LYS 9 30 30 LYS LYS A . n A 1 10 MET 10 31 31 MET MET A . n A 1 11 SER 11 32 32 SER SER A . n A 1 12 LEU 12 33 33 LEU LEU A . n A 1 13 LYS 13 34 34 LYS LYS A . n A 1 14 GLY 14 35 35 GLY GLY A . n A 1 15 THR 15 36 36 THR THR A . n A 1 16 THR 16 37 37 THR THR A . n A 1 17 VAL 17 38 38 VAL VAL A . n A 1 18 THR 18 39 39 THR THR A . n A 1 19 PRO 19 40 40 PRO PRO A . n A 1 20 ASP 20 41 41 ASP ASP A . n A 1 21 LYS 21 42 42 LYS LYS A . n A 1 22 ARG 22 43 43 ARG ARG A . n A 1 23 LYS 23 44 44 LYS LYS A . n A 1 24 GLY 24 45 45 GLY GLY A . n A 1 25 LEU 25 46 46 LEU LEU A . n A 1 26 VAL 26 47 47 VAL VAL A . n A 1 27 TYR 27 48 48 TYR TYR A . n A 1 28 ILE 28 49 49 ILE ILE A . n A 1 29 GLN 29 50 50 GLN GLN A . n A 1 30 GLN 30 51 51 GLN GLN A . n A 1 31 THR 31 52 52 THR THR A . n A 1 32 ASP 32 53 53 ASP ASP A . n A 1 33 ASP 33 54 54 ASP ASP A . n A 1 34 SER 34 55 55 SER SER A . n A 1 35 LEU 35 56 56 LEU LEU A . n A 1 36 ILE 36 57 57 ILE ILE A . n A 1 37 HIS 37 58 58 HIS HIS A . n A 1 38 PHE 38 59 59 PHE PHE A . n A 1 39 CYS 39 60 60 CYS CYS A . n A 1 40 TRP 40 61 61 TRP TRP A . n A 1 41 LYS 41 62 62 LYS LYS A . n A 1 42 ASP 42 63 63 ASP ASP A . n A 1 43 ARG 43 64 64 ARG ARG A . n A 1 44 THR 44 65 65 THR THR A . n A 1 45 SER 45 66 66 SER SER A . n A 1 46 GLY 46 67 67 GLY GLY A . n A 1 47 THR 47 68 68 THR THR A . n A 1 48 VAL 48 69 69 VAL VAL A . n A 1 49 GLU 49 70 70 GLU GLU A . n A 1 50 ASP 50 71 71 ASP ASP A . n A 1 51 ASP 51 72 72 ASP ASP A . n A 1 52 LEU 52 73 73 LEU LEU A . n A 1 53 ILE 53 74 74 ILE ILE A . n A 1 54 ILE 54 75 75 ILE ILE A . n A 1 55 PHE 55 76 76 PHE PHE A . n A 1 56 PRO 56 77 77 PRO PRO A . n A 1 57 ASP 57 78 78 ASP ASP A . n A 1 58 ASP 58 79 79 ASP ASP A . n A 1 59 CYS 59 80 80 CYS CYS A . n A 1 60 GLU 60 81 81 GLU GLU A . n A 1 61 PHE 61 82 82 PHE PHE A . n A 1 62 LYS 62 83 83 LYS LYS A . n A 1 63 ARG 63 84 84 ARG ARG A . n A 1 64 VAL 64 85 85 VAL VAL A . n A 1 65 PRO 65 86 86 PRO PRO A . n A 1 66 GLN 66 87 87 GLN GLN A . n A 1 67 CYS 67 88 88 CYS CYS A . n A 1 68 PRO 68 89 89 PRO PRO A . n A 1 69 SER 69 90 90 SER SER A . n A 1 70 GLY 70 91 91 GLY GLY A . n A 1 71 ARG 71 92 92 ARG ARG A . n A 1 72 VAL 72 93 93 VAL VAL A . n A 1 73 TYR 73 94 94 TYR TYR A . n A 1 74 VAL 74 95 95 VAL VAL A . n A 1 75 LEU 75 96 96 LEU LEU A . n A 1 76 LYS 76 97 97 LYS LYS A . n A 1 77 PHE 77 98 98 PHE PHE A . n A 1 78 LYS 78 99 99 LYS LYS A . n A 1 79 ALA 79 100 100 ALA ALA A . n A 1 80 GLY 80 101 101 GLY GLY A . n A 1 81 SER 81 102 102 SER SER A . n A 1 82 LYS 82 103 103 LYS LYS A . n A 1 83 ARG 83 104 104 ARG ARG A . n A 1 84 LEU 84 105 105 LEU LEU A . n A 1 85 PHE 85 106 106 PHE PHE A . n A 1 86 PHE 86 107 107 PHE PHE A . n A 1 87 TRP 87 108 108 TRP TRP A . n A 1 88 MET 88 109 109 MET MET A . n A 1 89 GLN 89 110 110 GLN GLN A . n A 1 90 GLU 90 111 111 GLU GLU A . n A 1 91 PRO 91 112 112 PRO PRO A . n A 1 92 LYS 92 113 113 LYS LYS A . n A 1 93 THR 93 114 114 THR THR A . n A 1 94 ASP 94 115 115 ASP ASP A . n A 1 95 GLN 95 116 116 GLN GLN A . n A 1 96 ASP 96 117 117 ASP ASP A . n A 1 97 GLU 97 118 118 GLU GLU A . n A 1 98 GLU 98 119 119 GLU GLU A . n A 1 99 HIS 99 120 120 HIS HIS A . n A 1 100 CYS 100 121 121 CYS CYS A . n A 1 101 ARG 101 122 122 ARG ARG A . n A 1 102 LYS 102 123 123 LYS LYS A . n A 1 103 VAL 103 124 124 VAL VAL A . n A 1 104 ASN 104 125 125 ASN ASN A . n A 1 105 GLU 105 126 126 GLU GLU A . n A 1 106 CYS 106 127 127 CYS CYS A . n A 1 107 LEU 107 128 128 LEU LEU A . n A 1 108 ASN 108 129 129 ASN ASN A . n A 1 109 ASN 109 130 130 ASN ASN A . n B 2 1 MET 1 1 1 MET MET B . n B 2 2 GLN 2 2 2 GLN GLN B . n B 2 3 ILE 3 3 3 ILE ILE B . n B 2 4 PHE 4 4 4 PHE PHE B . n B 2 5 VAL 5 5 5 VAL VAL B . n B 2 6 LYS 6 6 6 LYS LYS B . n B 2 7 THR 7 7 7 THR THR B . n B 2 8 LEU 8 8 8 LEU LEU B . n B 2 9 THR 9 9 9 THR THR B . n B 2 10 GLY 10 10 10 GLY GLY B . n B 2 11 LYS 11 11 11 LYS LYS B . n B 2 12 THR 12 12 12 THR THR B . n B 2 13 ILE 13 13 13 ILE ILE B . n B 2 14 THR 14 14 14 THR THR B . n B 2 15 LEU 15 15 15 LEU LEU B . n B 2 16 GLU 16 16 16 GLU GLU B . n B 2 17 VAL 17 17 17 VAL VAL B . n B 2 18 GLU 18 18 18 GLU GLU B . n B 2 19 PRO 19 19 19 PRO PRO B . n B 2 20 SER 20 20 20 SER SER B . n B 2 21 ASP 21 21 21 ASP ASP B . n B 2 22 THR 22 22 22 THR THR B . n B 2 23 ILE 23 23 23 ILE ILE B . n B 2 24 GLU 24 24 24 GLU GLU B . n B 2 25 ASN 25 25 25 ASN ASN B . n B 2 26 VAL 26 26 26 VAL VAL B . n B 2 27 LYS 27 27 27 LYS LYS B . n B 2 28 ALA 28 28 28 ALA ALA B . n B 2 29 LYS 29 29 29 LYS LYS B . n B 2 30 ILE 30 30 30 ILE ILE B . n B 2 31 GLN 31 31 31 GLN GLN B . n B 2 32 ASP 32 32 32 ASP ASP B . n B 2 33 LYS 33 33 33 LYS LYS B . n B 2 34 GLU 34 34 34 GLU GLU B . n B 2 35 GLY 35 35 35 GLY GLY B . n B 2 36 ILE 36 36 36 ILE ILE B . n B 2 37 PRO 37 37 37 PRO PRO B . n B 2 38 PRO 38 38 38 PRO PRO B . n B 2 39 ASP 39 39 39 ASP ASP B . n B 2 40 GLN 40 40 40 GLN GLN B . n B 2 41 GLN 41 41 41 GLN GLN B . n B 2 42 ARG 42 42 42 ARG ARG B . n B 2 43 LEU 43 43 43 LEU LEU B . n B 2 44 ILE 44 44 44 ILE ILE B . n B 2 45 PHE 45 45 45 PHE PHE B . n B 2 46 ALA 46 46 46 ALA ALA B . n B 2 47 GLY 47 47 47 GLY GLY B . n B 2 48 LYS 48 48 48 LYS LYS B . n B 2 49 GLN 49 49 49 GLN GLN B . n B 2 50 LEU 50 50 50 LEU LEU B . n B 2 51 GLU 51 51 51 GLU GLU B . n B 2 52 ASP 52 52 52 ASP ASP B . n B 2 53 GLY 53 53 53 GLY GLY B . n B 2 54 ARG 54 54 54 ARG ARG B . n B 2 55 THR 55 55 55 THR THR B . n B 2 56 LEU 56 56 56 LEU LEU B . n B 2 57 SER 57 57 57 SER SER B . n B 2 58 ASP 58 58 58 ASP ASP B . n B 2 59 TYR 59 59 59 TYR TYR B . n B 2 60 ASN 60 60 60 ASN ASN B . n B 2 61 ILE 61 61 61 ILE ILE B . n B 2 62 GLN 62 62 62 GLN GLN B . n B 2 63 LYS 63 63 63 LYS LYS B . n B 2 64 GLU 64 64 64 GLU GLU B . n B 2 65 SER 65 65 65 SER SER B . n B 2 66 THR 66 66 66 THR THR B . n B 2 67 LEU 67 67 67 LEU LEU B . n B 2 68 HIS 68 68 68 HIS HIS B . n B 2 69 LEU 69 69 69 LEU LEU B . n B 2 70 VAL 70 70 70 VAL VAL B . n B 2 71 LEU 71 71 71 LEU LEU B . n B 2 72 ARG 72 72 72 ARG ARG B . n B 2 73 LEU 73 73 73 LEU LEU B . n B 2 74 ARG 74 74 74 ARG ARG B . n B 2 75 GLY 75 75 75 GLY GLY B . n B 2 76 GLY 76 76 76 GLY GLY B . n # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2008-05-20 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2022-03-16 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Database references' 3 3 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' database_2 2 3 'Structure model' pdbx_struct_assembly 3 3 'Structure model' pdbx_struct_oper_list # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 OD1 A ASP 78 ? ? HZ2 A LYS 99 ? ? 1.58 2 1 HZ1 A LYS 30 ? ? OD1 A ASP 71 ? ? 1.58 3 1 HZ2 B LYS 11 ? ? OE2 B GLU 34 ? ? 1.60 4 2 OE2 A GLU 119 ? ? HZ1 A LYS 123 ? ? 1.56 5 2 HZ1 A LYS 30 ? ? OD1 A ASP 71 ? ? 1.59 6 2 OD2 A ASP 78 ? ? HZ2 A LYS 99 ? ? 1.59 7 2 OD2 B ASP 21 ? ? HZ2 B LYS 29 ? ? 1.60 8 3 HZ2 B LYS 27 ? ? OD1 B ASP 52 ? ? 1.59 9 3 OD2 A ASP 63 ? ? HG A SER 66 ? ? 1.60 10 4 HZ1 A LYS 30 ? ? OD1 A ASP 71 ? ? 1.57 11 4 H3 B MET 1 ? ? OE2 B GLU 16 ? ? 1.59 12 5 OE1 A GLU 81 ? ? HZ2 A LYS 97 ? ? 1.58 13 5 HG1 A THR 52 ? ? OD1 A ASP 54 ? ? 1.59 14 6 HZ1 A LYS 30 ? ? OD2 A ASP 71 ? ? 1.60 15 7 OE1 A GLU 119 ? ? HH21 A ARG 122 ? ? 1.59 16 7 HH21 A ARG 92 ? ? OD1 A ASP 117 ? ? 1.60 17 9 H3 B MET 1 ? ? OE2 B GLU 16 ? ? 1.56 18 9 HZ1 A LYS 30 ? ? OD1 A ASP 71 ? ? 1.59 19 9 OE2 A GLU 81 ? ? HZ3 A LYS 83 ? ? 1.60 20 10 OE2 A GLU 81 ? ? HZ2 A LYS 83 ? ? 1.58 21 10 OD2 A ASP 63 ? ? HG A SER 66 ? ? 1.59 22 10 HZ1 A LYS 30 ? ? OD1 A ASP 71 ? ? 1.59 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASP A 78 ? ? 69.36 -32.04 2 1 GLN A 87 ? ? -91.99 44.01 3 1 ALA B 46 ? ? 70.30 44.73 4 2 ALA B 46 ? ? 63.56 62.70 5 3 THR A 36 ? ? -143.11 -3.02 6 3 GLU A 70 ? ? -91.76 -75.12 7 3 ASP A 72 ? ? -161.73 89.80 8 3 ASP A 78 ? ? 77.36 -37.59 9 3 ASP B 52 ? ? -63.92 98.25 10 3 ARG B 74 ? ? -132.82 -58.33 11 5 GLU A 70 ? ? -92.24 -68.12 12 5 ASP A 78 ? ? 78.21 -13.38 13 5 GLN B 62 ? ? -112.48 -165.45 14 6 LYS B 33 ? ? -80.21 -72.75 15 6 GLN B 62 ? ? -100.42 -164.19 16 7 LEU A 23 ? ? -68.58 -78.31 17 7 THR A 36 ? ? -154.38 3.05 18 7 ASP A 78 ? ? 77.49 -13.73 19 7 ASN A 129 ? ? -130.64 -33.78 20 8 ASP A 78 ? ? 84.32 -10.25 21 9 ASP A 78 ? ? 72.11 -38.44 22 10 ALA B 46 ? ? 65.54 70.54 #