HEADER CHAPERONE 03-JUL-07 2Z5B TITLE CRYSTAL STRUCTURE OF A NOVEL CHAPERONE COMPLEX FOR YEAST 20S TITLE 2 PROTEASOME ASSEMBLY COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN YPL144W; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: DMP1; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: UNCHARACTERIZED PROTEIN YLR021W; COMPND 8 CHAIN: B; COMPND 9 SYNONYM: DMP2; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 4932; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET28; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 12 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 13 ORGANISM_TAXID: 4932; SOURCE 14 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 15 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 16 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 17 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 18 EXPRESSION_SYSTEM_PLASMID: PET28 KEYWDS PROTEASOME, CHAPERONE, S. CEREVISIAE EXPDTA X-RAY DIFFRACTION AUTHOR H.YASHIRODA,T.MIZUSHIMA,K.OKAMOTO,T.KAMEYAMA,H.HAYASHI,T.KISHIMOTO, AUTHOR 2 M.KASAHARA,E.KURIMOTO,E.SAKATA,A.SUZUKI,Y.HIRANO,S.MURATA,K.KATO, AUTHOR 3 T.YAMANE,K.TANAKA REVDAT 4 13-MAR-24 2Z5B 1 SEQADV REVDAT 3 24-FEB-09 2Z5B 1 VERSN REVDAT 2 18-MAR-08 2Z5B 1 JRNL REMARK REVDAT 1 22-JAN-08 2Z5B 0 JRNL AUTH H.YASHIRODA,T.MIZUSHIMA,K.OKAMOTO,T.KAMEYAMA,H.HAYASHI, JRNL AUTH 2 T.KISHIMOTO,S.NIWA,M.KASAHARA,E.KURIMOTO,E.SAKATA,K.TAKAGI, JRNL AUTH 3 A.SUZUKI,Y.HIRANO,S.MURATA,K.KATO,T.YAMANE,K.TANAKA JRNL TITL CRYSTAL STRUCTURE OF A CHAPERONE COMPLEX THAT CONTRIBUTES TO JRNL TITL 2 THE ASSEMBLY OF YEAST 20S PROTEASOMES JRNL REF NAT.STRUCT.MOL.BIOL. V. 15 228 2008 JRNL REFN ISSN 1545-9993 JRNL PMID 18278057 JRNL DOI 10.1038/NSMB.1386 REMARK 2 REMARK 2 RESOLUTION. 1.96 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.96 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.81 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.9 REMARK 3 NUMBER OF REFLECTIONS : 20240 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.242 REMARK 3 R VALUE (WORKING SET) : 0.240 REMARK 3 FREE R VALUE : 0.287 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1096 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.96 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.01 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1404 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 92.66 REMARK 3 BIN R VALUE (WORKING SET) : 0.2330 REMARK 3 BIN FREE R VALUE SET COUNT : 85 REMARK 3 BIN FREE R VALUE : 0.2890 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2077 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 31 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 40.87 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.37000 REMARK 3 B22 (A**2) : 1.37000 REMARK 3 B33 (A**2) : -2.06000 REMARK 3 B12 (A**2) : 0.69000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.204 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.186 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.116 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.887 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.930 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.889 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2111 ; 0.010 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2848 ; 1.393 ; 1.988 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 250 ; 7.558 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 91 ;37.382 ;24.396 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 395 ;17.504 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 12 ;20.243 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 334 ; 0.109 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1526 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 942 ; 0.226 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1442 ; 0.305 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 86 ; 0.170 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 40 ; 0.208 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 8 ; 0.180 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1353 ; 1.014 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2105 ; 1.720 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 879 ; 1.722 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 743 ; 2.558 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2Z5B COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 05-JUL-07. REMARK 100 THE DEPOSITION ID IS D_1000027539. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-JUL-06; 09-DEC-06 REMARK 200 TEMPERATURE (KELVIN) : 100; 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 2 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y; Y REMARK 200 RADIATION SOURCE : SPRING-8; SPRING-8 REMARK 200 BEAMLINE : BL44XU; BL44XU REMARK 200 X-RAY GENERATOR MODEL : NULL; NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9000; 0.96408, 0.97925, REMARK 200 0.97945 REMARK 200 MONOCHROMATOR : NULL; NULL REMARK 200 OPTICS : NULL; NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD; CCD REMARK 200 DETECTOR MANUFACTURER : BRUKER DIP-6040; BRUKER DIP-6040 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21419 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.960 REMARK 200 RESOLUTION RANGE LOW (A) : 49.810 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 200 DATA REDUNDANCY : 4.000 REMARK 200 R MERGE (I) : 0.05900 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 24.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.96 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.03 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.7 REMARK 200 DATA REDUNDANCY IN SHELL : 2.60 REMARK 200 R MERGE FOR SHELL (I) : 0.18700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH; MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.01 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.12 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25MM MES, 50MM KH2PO4, 16%(W/V) PEG REMARK 280 8000, PH 6.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K. REMARK 280 0.1M HEPES, 4.1M NACL, PH 7.0, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 27.40200 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 54.80400 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2280 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13930 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -12.1 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 465 GLU A 13 REMARK 465 SER A 14 REMARK 465 GLY A 15 REMARK 465 PHE A 16 REMARK 465 LEU A 17 REMARK 465 ALA A 48 REMARK 465 SER A 49 REMARK 465 LEU A 50 REMARK 465 ASN A 51 REMARK 465 SER A 52 REMARK 465 ASP A 68 REMARK 465 ARG A 69 REMARK 465 HIS A 70 REMARK 465 ILE A 71 REMARK 465 ASN A 72 REMARK 465 LEU A 73 REMARK 465 LYS A 74 REMARK 465 SER A 75 REMARK 465 GLY A 76 REMARK 465 GLY A 77 REMARK 465 GLU A 148 REMARK 465 GLY B 13 REMARK 465 LYS B 14 REMARK 465 ASP B 15 REMARK 465 SER B 16 REMARK 465 SER B 17 REMARK 465 LEU B 18 REMARK 465 ASN B 19 REMARK 465 ALA B 20 REMARK 465 SER B 21 REMARK 465 SER B 22 REMARK 465 ASN B 60 REMARK 465 PRO B 61 REMARK 465 ILE B 62 REMARK 465 LEU B 63 REMARK 465 ASP B 64 REMARK 465 ILE B 65 REMARK 465 ASN B 66 REMARK 465 VAL B 67 REMARK 465 PRO B 68 REMARK 465 LEU B 69 REMARK 465 ALA B 70 REMARK 465 GLY B 71 REMARK 465 ASN B 72 REMARK 465 LEU B 73 REMARK 465 GLY B 74 REMARK 465 ASN B 75 REMARK 465 THR B 76 REMARK 465 GLY B 77 REMARK 465 GLY B 78 REMARK 465 ASP B 79 REMARK 465 VAL B 128 REMARK 465 SER B 129 REMARK 465 GLY B 130 REMARK 465 THR B 131 REMARK 465 MET B 132 REMARK 465 ALA B 133 REMARK 465 GLN B 134 REMARK 465 ASP B 135 REMARK 465 ASN B 136 REMARK 465 MET B 137 REMARK 465 ARG B 151 REMARK 465 ALA B 152 REMARK 465 THR B 153 REMARK 465 LYS B 154 REMARK 465 GLU B 155 REMARK 465 GLN B 156 REMARK 465 LYS B 179 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH2 ARG A 8 OE2 GLU A 145 2.09 REMARK 500 OH TYR B 95 OE2 GLU B 118 2.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 11 -153.63 -97.22 REMARK 500 ARG A 32 -145.09 -113.77 REMARK 500 LYS A 34 -134.47 -156.68 REMARK 500 MET A 66 -148.16 -109.08 REMARK 500 THR B 8 -159.43 -150.71 REMARK 500 PRO B 11 154.98 -47.89 REMARK 500 ALA B 105 36.35 -142.18 REMARK 500 PHE B 139 116.71 -168.26 REMARK 500 ASN B 161 54.60 -162.66 REMARK 500 TYR B 177 46.56 73.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASP A 31 ARG A 32 144.65 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2Z5C RELATED DB: PDB REMARK 900 COMPLEXED WITH DMP1, DMP2 AND PROTEASOME SUBUNIT ALPHA 5 DBREF 2Z5B A 1 148 UNP Q12245 YP144_YEAST 1 148 DBREF 2Z5B B 1 179 UNP Q07951 YL021_YEAST 1 179 SEQADV 2Z5B GLY A -2 UNP Q12245 EXPRESSION TAG SEQADV 2Z5B SER A -1 UNP Q12245 EXPRESSION TAG SEQADV 2Z5B HIS A 0 UNP Q12245 EXPRESSION TAG SEQRES 1 A 151 GLY SER HIS MET LEU VAL LYS THR ILE SER ARG THR ILE SEQRES 2 A 151 GLU SER GLU SER GLY PHE LEU GLN PRO THR LEU ASP VAL SEQRES 3 A 151 ILE ALA THR LEU PRO ALA ASP ASP ARG SER LYS LYS ILE SEQRES 4 A 151 PRO ILE SER LEU VAL VAL GLY PHE LYS GLN GLU ALA SER SEQRES 5 A 151 LEU ASN SER SER SER SER LEU SER CYS TYR TYR TYR ALA SEQRES 6 A 151 ILE PRO LEU MET ARG ASP ARG HIS ILE ASN LEU LYS SER SEQRES 7 A 151 GLY GLY SER ASN VAL VAL GLY ILE PRO LEU LEU ASP THR SEQRES 8 A 151 LYS ASP ASP ARG ILE ARG ASP MET ALA ARG HIS MET ALA SEQRES 9 A 151 THR ILE ILE SER GLU ARG PHE ASN ARG PRO CYS TYR VAL SEQRES 10 A 151 THR TRP SER SER LEU PRO SER GLU ASP PRO SER MET LEU SEQRES 11 A 151 VAL ALA ASN HIS LEU TYR ILE LEU LYS LYS CYS LEU ASP SEQRES 12 A 151 LEU LEU LYS THR GLU LEU GLY GLU SEQRES 1 B 179 MET ILE SER TYR GLU PHE GLN THR HIS LEU PRO LYS GLY SEQRES 2 B 179 LYS ASP SER SER LEU ASN ALA SER SER GLU ASN LYS GLU SEQRES 3 B 179 LEU TYR VAL GLN ALA THR HIS PHE ASN ASN THR ILE LEU SEQRES 4 B 179 LEU GLN ILE ARG LEU ASN GLY GLU MET ASP SER THR TYR SEQRES 5 B 179 GLU VAL SER SER LYS GLY LEU ASN PRO ILE LEU ASP ILE SEQRES 6 B 179 ASN VAL PRO LEU ALA GLY ASN LEU GLY ASN THR GLY GLY SEQRES 7 B 179 ASP TYR ASP ASP GLU GLU GLU GLU PHE VAL ARG ASP HIS SEQRES 8 B 179 LEU SER ASP TYR GLN VAL VAL THR LYS LEU GLY ASP SER SEQRES 9 B 179 ALA ASP PRO LYS VAL PRO VAL VAL CYS VAL GLN ILE ALA SEQRES 10 B 179 GLU LEU TYR ARG ARG VAL ILE LEU PRO GLU VAL SER GLY SEQRES 11 B 179 THR MET ALA GLN ASP ASN MET GLN PHE SER LEU LEU ILE SEQRES 12 B 179 SER MET SER SER LYS ILE TRP ARG ALA THR LYS GLU GLN SEQRES 13 B 179 SER ALA ASP ASP ASN ASP PHE GLY LYS LEU VAL PHE VAL SEQRES 14 B 179 LEU LYS CYS ILE LYS ASP MET TYR ALA LYS FORMUL 3 HOH *31(H2 O) HELIX 1 1 ASP A 90 ASN A 109 1 20 HELIX 2 2 PRO A 124 ASN A 130 1 7 HELIX 3 3 ASN A 130 GLY A 147 1 18 HELIX 4 4 GLU B 83 LEU B 92 1 10 HELIX 5 5 LYS B 108 VAL B 123 1 16 HELIX 6 6 SER B 147 TRP B 150 5 4 HELIX 7 7 ASN B 161 TYR B 177 1 17 SHEET 1 A 6 VAL A 3 ILE A 10 0 SHEET 2 A 6 LEU A 21 PRO A 28 -1 O LEU A 27 N LYS A 4 SHEET 3 A 6 ILE A 38 PHE A 44 -1 O VAL A 41 N ILE A 24 SHEET 4 A 6 CYS A 112 SER A 118 1 O THR A 115 N LEU A 40 SHEET 5 A 6 SER A 55 PRO A 64 -1 N TYR A 60 O VAL A 114 SHEET 6 A 6 VAL A 80 LEU A 86 -1 O LEU A 85 N TYR A 59 SHEET 1 B 6 SER B 3 HIS B 9 0 SHEET 2 B 6 GLU B 26 HIS B 33 -1 O VAL B 29 N PHE B 6 SHEET 3 B 6 ILE B 38 LEU B 44 -1 O GLN B 41 N GLN B 30 SHEET 4 B 6 SER B 140 MET B 145 1 O SER B 144 N LEU B 40 SHEET 5 B 6 SER B 50 SER B 56 -1 N VAL B 54 O LEU B 141 SHEET 6 B 6 TYR B 95 LEU B 101 -1 O GLN B 96 N SER B 55 CISPEP 1 PRO B 11 LYS B 12 0 10.35 CISPEP 2 LEU B 125 PRO B 126 0 -8.74 CRYST1 57.487 57.487 82.206 90.00 90.00 120.00 P 31 3 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017395 0.010043 0.000000 0.00000 SCALE2 0.000000 0.020086 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012165 0.00000