HEADER CONTRACTILE PROTEIN 12-JUL-07 2Z5H TITLE CRYSTAL STRUCTURE OF THE HEAD-TO-TAIL JUNCTION OF TROPOMYOSIN TITLE 2 COMPLEXED WITH A FRAGMENT OF TNT COMPND MOL_ID: 1; COMPND 2 MOLECULE: GENERAL CONTROL PROTEIN GCN4 AND TROPOMYOSIN ALPHA-1 CHAIN; COMPND 3 CHAIN: A, B, C, D, E, F, G, H; COMPND 4 FRAGMENT: C TERMINAL DOMAIN OF GCN4 AND TROPOMYOSIN ALPHA-1 CHAIN; COMPND 5 SYNONYM: TM; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: TROPOMYOSIN ALPHA-1 CHAIN AND GENERAL CONTROL PROTEIN GCN4; COMPND 9 CHAIN: I; COMPND 10 FRAGMENT: N TERMINAL DOMAIN OF TROPOMYOSIN ALPHA-1 CHAIN AND C COMPND 11 TERMINAL DOMAIN OF GCN4; COMPND 12 SYNONYM: TM; COMPND 13 ENGINEERED: YES; COMPND 14 MOL_ID: 3; COMPND 15 MOLECULE: TROPONIN T, FAST SKELETAL MUSCLE ISOFORMS; COMPND 16 CHAIN: T; COMPND 17 FRAGMENT: RESIDUES 58-112; COMPND 18 SYNONYM: TNT; COMPND 19 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE, ORYCTOLAGUS SOURCE 3 CUNICULUS; SOURCE 4 ORGANISM_COMMON: BAKER'S YEAST, RABBIT; SOURCE 5 ORGANISM_TAXID: 4932, 9986; SOURCE 6 STRAIN: ,; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)PLYSS; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PET3A; SOURCE 12 MOL_ID: 2; SOURCE 13 ORGANISM_SCIENTIFIC: ORYCTOLAGUS CUNICULUS, SACCHAROMYCES SOURCE 14 CEREVISIAE; SOURCE 15 ORGANISM_COMMON: RABBIT, BAKER'S YEAST; SOURCE 16 ORGANISM_TAXID: 9986, 4932; SOURCE 17 STRAIN: ,; SOURCE 18 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 19 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 20 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)PLYSS; SOURCE 21 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 22 EXPRESSION_SYSTEM_PLASMID: PET3A; SOURCE 23 MOL_ID: 3; SOURCE 24 ORGANISM_SCIENTIFIC: GALLUS GALLUS; SOURCE 25 ORGANISM_COMMON: CHICKEN; SOURCE 26 ORGANISM_TAXID: 9031; SOURCE 27 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 28 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 29 EXPRESSION_SYSTEM_STRAIN: C41(DE3); SOURCE 30 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 31 EXPRESSION_SYSTEM_PLASMID: PET3A KEYWDS ACTIN, TROPONIN, TROPOMYOSIN, CYTOSKELETON, CARDIOMYOPATHY, FOUR- KEYWDS 2 HELIX BUNDLE, CONTRACTILE PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR K.MURAKAMI,K.NOZAWA,K.TOMII,N.KUDOU,N.IGARASHI,Y.SHIRAKIHARA, AUTHOR 2 S.WAKATSUKI,M.STEWART,T.YASUNAGA,T.WAKABAYASHI REVDAT 5 13-MAR-24 2Z5H 1 REMARK SEQADV REVDAT 4 16-AUG-17 2Z5H 1 SOURCE REMARK REVDAT 3 18-SEP-13 2Z5H 1 JRNL REMARK VERSN REVDAT 2 24-FEB-09 2Z5H 1 VERSN REVDAT 1 22-APR-08 2Z5H 0 JRNL AUTH K.MURAKAMI,M.STEWART,K.NOZAWA,K.TOMII,N.KUDOU,N.IGARASHI, JRNL AUTH 2 Y.SHIRAKIHARA,S.WAKATSUKI,T.YASUNAGA,T.WAKABAYASHI JRNL TITL STRUCTURAL BASIS FOR TROPOMYOSIN OVERLAP IN THIN (ACTIN) JRNL TITL 2 FILAMENTS AND THE GENERATION OF A MOLECULAR SWIVEL BY JRNL TITL 3 TROPONIN-T JRNL REF PROC.NATL.ACAD.SCI.USA V. 105 7200 2008 JRNL REFN ISSN 0027-8424 JRNL PMID 18483193 JRNL DOI 10.1073/PNAS.0801950105 REMARK 2 REMARK 2 RESOLUTION. 2.89 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.89 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 113.96 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 95.9 REMARK 3 NUMBER OF REFLECTIONS : 23334 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.237 REMARK 3 R VALUE (WORKING SET) : 0.237 REMARK 3 FREE R VALUE : 0.247 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1251 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.89 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.97 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1519 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 86.46 REMARK 3 BIN R VALUE (WORKING SET) : 0.2970 REMARK 3 BIN FREE R VALUE SET COUNT : 78 REMARK 3 BIN FREE R VALUE : 0.3550 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3885 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 55 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 70.80 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 67.19 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 6.18000 REMARK 3 B22 (A**2) : -3.00000 REMARK 3 B33 (A**2) : -3.18000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.509 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.303 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.231 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 12.013 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.913 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.907 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3914 ; 0.010 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5236 ; 2.124 ; 2.008 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 464 ; 5.947 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 206 ;38.963 ;26.699 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 828 ;21.991 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 13 ;19.991 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 591 ; 0.108 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2850 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1781 ; 0.305 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2663 ; 0.320 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 117 ; 0.218 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 152 ; 0.360 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 18 ; 0.327 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2415 ; 3.487 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3742 ; 5.356 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1617 ; 4.576 ; 2.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1494 ; 7.133 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2Z5H COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 19-JUL-07. REMARK 100 THE DEPOSITION ID IS D_1000027545. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-FEB-06 REMARK 200 TEMPERATURE (KELVIN) : 93 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : AR-NW12A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25479 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.890 REMARK 200 RESOLUTION RANGE LOW (A) : 113.960 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.5 REMARK 200 DATA REDUNDANCY : 4.900 REMARK 200 R MERGE (I) : 0.07700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.5 REMARK 200 DATA REDUNDANCY IN SHELL : 4.60 REMARK 200 R MERGE FOR SHELL (I) : 0.31700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASES REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 73.88 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.71 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PH 6.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X,-Y+1/2,Z REMARK 290 7555 -X+1/2,Y,-Z REMARK 290 8555 X,-Y,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 43.40450 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 81.78500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 79.15400 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 81.78500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 43.40450 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 79.15400 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 43.40450 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 79.15400 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 81.78500 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 79.15400 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 43.40450 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 81.78500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, I, T REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2760 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 7750 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -29.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2650 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 7490 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -29.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2630 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 7810 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -30.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: G, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 THR A 282 REMARK 465 SER A 283 REMARK 465 ILE A 284 REMARK 465 ILE B 284 REMARK 465 THR D 282 REMARK 465 SER D 283 REMARK 465 ILE D 284 REMARK 465 THR E 282 REMARK 465 SER E 283 REMARK 465 ILE E 284 REMARK 465 ILE F 284 REMARK 465 THR H 282 REMARK 465 SER H 283 REMARK 465 ILE H 284 REMARK 465 VAL I 36 REMARK 465 GLY T 58 REMARK 465 GLU T 59 REMARK 465 LYS T 60 REMARK 465 VAL T 61 REMARK 465 ASP T 62 REMARK 465 PHE T 63 REMARK 465 ASP T 64 REMARK 465 ASP T 65 REMARK 465 LYS T 100 REMARK 465 GLU T 101 REMARK 465 ARG T 102 REMARK 465 ILE T 103 REMARK 465 GLU T 104 REMARK 465 LYS T 105 REMARK 465 ARG T 106 REMARK 465 ARG T 107 REMARK 465 ALA T 108 REMARK 465 GLU T 109 REMARK 465 ARG T 110 REMARK 465 ALA T 111 REMARK 465 GLU T 112 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 ILE T 66 N CG1 CG2 CD1 REMARK 480 LYS T 69 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O LEU T 78 CG1 ILE T 82 1.70 REMARK 500 N ILE T 66 CB LYS T 69 1.77 REMARK 500 O GLN T 79 OD2 ASP T 83 1.80 REMARK 500 O ALA A 269 NH1 ARG T 90 1.90 REMARK 500 O LYS T 69 N ASN T 72 1.94 REMARK 500 CE1 HIS A 276 CB ASP T 83 1.97 REMARK 500 ND1 HIS A 276 CB ASP T 83 2.04 REMARK 500 O ILE T 76 N ALA T 80 2.10 REMARK 500 O MET I 1 O HOH I 39 2.12 REMARK 500 CE1 HIS A 276 OD1 ASP T 83 2.12 REMARK 500 O LYS T 69 N GLN T 71 2.15 REMARK 500 O ARG T 89 CG GLU T 92 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NE2 GLN I 9 O SER T 84 7455 1.87 REMARK 500 CD GLN I 9 O SER T 84 7455 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ILE T 66 CB ILE T 66 CG2 -0.206 REMARK 500 LYS T 69 CB LYS T 69 CG -0.216 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP E 255 CB - CG - OD1 ANGL. DEV. = 5.5 DEGREES REMARK 500 LYS T 69 CA - CB - CG ANGL. DEV. = 15.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 280 30.00 -60.80 REMARK 500 ASP B 280 44.76 -90.30 REMARK 500 MET B 281 -9.35 -58.78 REMARK 500 GLU C 234 -95.49 -151.36 REMARK 500 THR C 282 -131.83 -126.13 REMARK 500 ASP E 280 21.92 -79.41 REMARK 500 GLU G 234 -94.85 -143.81 REMARK 500 THR G 282 -102.35 -149.79 REMARK 500 ALA I -1 -141.08 82.06 REMARK 500 LYS I 15 -34.96 -152.33 REMARK 500 ALA I 22 42.76 -90.65 REMARK 500 GLU I 23 -36.48 -147.57 REMARK 500 LYS I 33 2.19 -68.32 REMARK 500 GLN T 67 -38.99 -161.27 REMARK 500 ARG T 70 30.54 -60.72 REMARK 500 ASN T 72 -8.39 -51.13 REMARK 500 LEU T 81 38.78 -148.43 REMARK 500 ASP T 83 61.15 -68.73 REMARK 500 SER T 84 15.12 -157.27 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLU C 234 LEU C 235 -147.77 REMARK 500 GLU G 234 LEU G 235 -145.04 REMARK 500 REMARK 500 REMARK: NULL DBREF 2Z5H A 234 253 UNP P03069 GCN4_YEAST 259 278 DBREF 2Z5H A 254 284 UNP P58772 TPM1_RABIT 254 284 DBREF 2Z5H B 234 253 UNP P03069 GCN4_YEAST 259 278 DBREF 2Z5H B 254 284 UNP P58772 TPM1_RABIT 254 284 DBREF 2Z5H C 234 253 UNP P03069 GCN4_YEAST 259 278 DBREF 2Z5H C 254 284 UNP P58772 TPM1_RABIT 254 284 DBREF 2Z5H D 234 253 UNP P03069 GCN4_YEAST 259 278 DBREF 2Z5H D 254 284 UNP P58772 TPM1_RABIT 254 284 DBREF 2Z5H E 234 253 UNP P03069 GCN4_YEAST 259 278 DBREF 2Z5H E 254 284 UNP P58772 TPM1_RABIT 254 284 DBREF 2Z5H F 234 253 UNP P03069 GCN4_YEAST 259 278 DBREF 2Z5H F 254 284 UNP P58772 TPM1_RABIT 254 284 DBREF 2Z5H G 234 253 UNP P03069 GCN4_YEAST 259 278 DBREF 2Z5H G 254 284 UNP P58772 TPM1_RABIT 254 284 DBREF 2Z5H H 234 253 UNP P03069 GCN4_YEAST 259 278 DBREF 2Z5H H 254 284 UNP P58772 TPM1_RABIT 254 284 DBREF 2Z5H I 1 24 UNP P58772 TPM1_RABIT 1 24 DBREF 2Z5H I 25 36 UNP P03069 GCN4_YEAST 267 278 DBREF 2Z5H T 58 112 UNP P12620 TNNT3_CHICK 58 112 SEQADV 2Z5H GLY A 233 UNP P03069 EXPRESSION TAG SEQADV 2Z5H GLY B 233 UNP P03069 EXPRESSION TAG SEQADV 2Z5H GLY C 233 UNP P03069 EXPRESSION TAG SEQADV 2Z5H GLY D 233 UNP P03069 EXPRESSION TAG SEQADV 2Z5H GLY E 233 UNP P03069 EXPRESSION TAG SEQADV 2Z5H GLY F 233 UNP P03069 EXPRESSION TAG SEQADV 2Z5H GLY G 233 UNP P03069 EXPRESSION TAG SEQADV 2Z5H GLY H 233 UNP P03069 EXPRESSION TAG SEQADV 2Z5H GLY I -3 UNP P58772 EXPRESSION TAG SEQADV 2Z5H ALA I -2 UNP P58772 EXPRESSION TAG SEQADV 2Z5H ALA I -1 UNP P58772 EXPRESSION TAG SEQADV 2Z5H SER I 0 UNP P58772 EXPRESSION TAG SEQRES 1 A 52 GLY GLU LEU LEU SER LYS ASN TYR HIS LEU GLU ASN GLU SEQRES 2 A 52 VAL ALA ARG LEU LYS LYS LEU VAL ASP ASP LEU GLU ASP SEQRES 3 A 52 GLU LEU TYR ALA GLN LYS LEU LYS TYR LYS ALA ILE SER SEQRES 4 A 52 GLU GLU LEU ASP HIS ALA LEU ASN ASP MET THR SER ILE SEQRES 1 B 52 GLY GLU LEU LEU SER LYS ASN TYR HIS LEU GLU ASN GLU SEQRES 2 B 52 VAL ALA ARG LEU LYS LYS LEU VAL ASP ASP LEU GLU ASP SEQRES 3 B 52 GLU LEU TYR ALA GLN LYS LEU LYS TYR LYS ALA ILE SER SEQRES 4 B 52 GLU GLU LEU ASP HIS ALA LEU ASN ASP MET THR SER ILE SEQRES 1 C 52 GLY GLU LEU LEU SER LYS ASN TYR HIS LEU GLU ASN GLU SEQRES 2 C 52 VAL ALA ARG LEU LYS LYS LEU VAL ASP ASP LEU GLU ASP SEQRES 3 C 52 GLU LEU TYR ALA GLN LYS LEU LYS TYR LYS ALA ILE SER SEQRES 4 C 52 GLU GLU LEU ASP HIS ALA LEU ASN ASP MET THR SER ILE SEQRES 1 D 52 GLY GLU LEU LEU SER LYS ASN TYR HIS LEU GLU ASN GLU SEQRES 2 D 52 VAL ALA ARG LEU LYS LYS LEU VAL ASP ASP LEU GLU ASP SEQRES 3 D 52 GLU LEU TYR ALA GLN LYS LEU LYS TYR LYS ALA ILE SER SEQRES 4 D 52 GLU GLU LEU ASP HIS ALA LEU ASN ASP MET THR SER ILE SEQRES 1 E 52 GLY GLU LEU LEU SER LYS ASN TYR HIS LEU GLU ASN GLU SEQRES 2 E 52 VAL ALA ARG LEU LYS LYS LEU VAL ASP ASP LEU GLU ASP SEQRES 3 E 52 GLU LEU TYR ALA GLN LYS LEU LYS TYR LYS ALA ILE SER SEQRES 4 E 52 GLU GLU LEU ASP HIS ALA LEU ASN ASP MET THR SER ILE SEQRES 1 F 52 GLY GLU LEU LEU SER LYS ASN TYR HIS LEU GLU ASN GLU SEQRES 2 F 52 VAL ALA ARG LEU LYS LYS LEU VAL ASP ASP LEU GLU ASP SEQRES 3 F 52 GLU LEU TYR ALA GLN LYS LEU LYS TYR LYS ALA ILE SER SEQRES 4 F 52 GLU GLU LEU ASP HIS ALA LEU ASN ASP MET THR SER ILE SEQRES 1 G 52 GLY GLU LEU LEU SER LYS ASN TYR HIS LEU GLU ASN GLU SEQRES 2 G 52 VAL ALA ARG LEU LYS LYS LEU VAL ASP ASP LEU GLU ASP SEQRES 3 G 52 GLU LEU TYR ALA GLN LYS LEU LYS TYR LYS ALA ILE SER SEQRES 4 G 52 GLU GLU LEU ASP HIS ALA LEU ASN ASP MET THR SER ILE SEQRES 1 H 52 GLY GLU LEU LEU SER LYS ASN TYR HIS LEU GLU ASN GLU SEQRES 2 H 52 VAL ALA ARG LEU LYS LYS LEU VAL ASP ASP LEU GLU ASP SEQRES 3 H 52 GLU LEU TYR ALA GLN LYS LEU LYS TYR LYS ALA ILE SER SEQRES 4 H 52 GLU GLU LEU ASP HIS ALA LEU ASN ASP MET THR SER ILE SEQRES 1 I 40 GLY ALA ALA SER MET ASP ALA ILE LYS LYS LYS MET GLN SEQRES 2 I 40 MET LEU LYS LEU ASP LYS GLU ASN ALA LEU ASP ARG ALA SEQRES 3 I 40 GLU GLN LEU GLU ASN GLU VAL ALA ARG LEU LYS LYS LEU SEQRES 4 I 40 VAL SEQRES 1 T 55 GLY GLU LYS VAL ASP PHE ASP ASP ILE GLN LYS LYS ARG SEQRES 2 T 55 GLN ASN LYS ASP LEU ILE GLU LEU GLN ALA LEU ILE ASP SEQRES 3 T 55 SER HIS PHE GLU ALA ARG ARG LYS GLU GLU GLU GLU LEU SEQRES 4 T 55 VAL ALA LEU LYS GLU ARG ILE GLU LYS ARG ARG ALA GLU SEQRES 5 T 55 ARG ALA GLU FORMUL 11 HOH *55(H2 O) HELIX 1 1 GLY A 233 LEU A 278 1 46 HELIX 2 2 GLY B 233 ASP B 280 1 48 HELIX 3 3 GLU C 234 MET C 281 1 48 HELIX 4 4 GLY D 233 ASN D 279 1 47 HELIX 5 5 GLY E 233 LEU E 278 1 46 HELIX 6 6 GLY F 233 ASP F 280 1 48 HELIX 7 7 MET F 281 SER F 283 5 3 HELIX 8 8 GLU G 234 MET G 281 1 48 HELIX 9 9 GLY H 233 ASN H 279 1 47 HELIX 10 10 ASP I 2 LYS I 7 1 6 HELIX 11 11 LYS I 15 ASP I 20 1 6 HELIX 12 12 LYS T 73 LEU T 78 1 6 CRYST1 86.809 158.308 163.570 90.00 90.00 90.00 I 21 21 21 64 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011520 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006317 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006114 0.00000