HEADER TRANSPORT PROTEIN/RNA BINDING PROTEIN 14-JUL-07 2Z5K TITLE COMPLEX OF TRANSPORTIN 1 WITH TAP NLS COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRANSPORTIN-1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: IMPORTIN BETA-2, KARYOPHERIN BETA-2, M9 REGION INTERACTION COMPND 5 PROTEIN, MIP; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: NUCLEAR RNA EXPORT FACTOR 1; COMPND 9 CHAIN: B; COMPND 10 FRAGMENT: NUCLEAR EXPORT SIGNAL, UNP RESIDUES 53-82; COMPND 11 SYNONYM: TIP-ASSOCIATING PROTEIN, TIP-ASSOCIATED PROTEIN, MRNA EXPORT COMPND 12 FACTOR TAP, TAP NLS; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PGEX6P3; SOURCE 10 MOL_ID: 2; SOURCE 11 SYNTHETIC: YES; SOURCE 12 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 13 ORGANISM_TAXID: 9606 KEYWDS NUCLEAR TRANSPORT, IMPORTIN, EXPORTIN, KARYOPHERIN, KEYWDS 2 NUCLEOCYTOPLASMIC, TAP, NLS, TRANSPORT PROTEIN-RNA BINDING PROTEIN KEYWDS 3 COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR T.IMASAKI,T.SHIMIZU,H.HASHIMOTO,Y.HIDAKA,M.YAMADA,S.KOSE,N.IMAMOTO, AUTHOR 2 M.SATO REVDAT 5 01-NOV-23 2Z5K 1 REMARK REVDAT 4 09-MAY-18 2Z5K 1 SOURCE REMARK REVDAT 3 13-JUL-11 2Z5K 1 VERSN REVDAT 2 24-FEB-09 2Z5K 1 VERSN REVDAT 1 23-OCT-07 2Z5K 0 JRNL AUTH T.IMASAKI,T.SHIMIZU,H.HASHIMOTO,Y.HIDAKA,S.KOSE,N.IMAMOTO, JRNL AUTH 2 M.YAMADA,M.SATO JRNL TITL STRUCTURAL BASIS FOR SUBSTRATE RECOGNITION AND DISSOCIATION JRNL TITL 2 BY HUMAN TRANSPORTIN 1 JRNL REF MOL.CELL V. 28 57 2007 JRNL REFN ISSN 1097-2765 JRNL PMID 17936704 JRNL DOI 10.1016/J.MOLCEL.2007.08.006 REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.40 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 96.4 REMARK 3 NUMBER OF REFLECTIONS : 35538 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.223 REMARK 3 R VALUE (WORKING SET) : 0.221 REMARK 3 FREE R VALUE : 0.268 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1867 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.67 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2301 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 85.90 REMARK 3 BIN R VALUE (WORKING SET) : 0.3350 REMARK 3 BIN FREE R VALUE SET COUNT : 124 REMARK 3 BIN FREE R VALUE : 0.3780 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6798 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 5 REMARK 3 SOLVENT ATOMS : 28 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 86.81 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.67000 REMARK 3 B22 (A**2) : -3.05000 REMARK 3 B33 (A**2) : 3.72000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.539 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.314 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.261 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 27.347 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.949 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.923 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6950 ; 0.010 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 9443 ; 1.186 ; 1.978 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 849 ; 4.617 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 314 ;42.777 ;25.064 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1241 ;19.151 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 34 ;19.076 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1082 ; 0.079 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5196 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 3539 ; 0.210 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 4882 ; 0.301 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 176 ; 0.122 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 47 ; 0.178 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 3 ; 0.045 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 4402 ; 0.344 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 6961 ; 0.611 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2865 ; 0.790 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2482 ; 1.317 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 6 A 125 REMARK 3 ORIGIN FOR THE GROUP (A): -3.1293 -16.1188 57.5666 REMARK 3 T TENSOR REMARK 3 T11: 0.5511 T22: 0.0203 REMARK 3 T33: 0.6655 T12: -0.4872 REMARK 3 T13: 0.0293 T23: -0.2023 REMARK 3 L TENSOR REMARK 3 L11: 3.9663 L22: 3.9586 REMARK 3 L33: 4.4461 L12: -3.4132 REMARK 3 L13: -0.3552 L23: -1.8177 REMARK 3 S TENSOR REMARK 3 S11: 0.3674 S12: -0.4684 S13: -0.5946 REMARK 3 S21: 0.1591 S22: -0.0111 S23: -0.0822 REMARK 3 S31: 1.2805 S32: -0.3044 S33: -0.3563 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 126 A 319 REMARK 3 ORIGIN FOR THE GROUP (A): -3.7706 7.6642 32.0150 REMARK 3 T TENSOR REMARK 3 T11: -0.2250 T22: -0.0973 REMARK 3 T33: 0.3295 T12: 0.1489 REMARK 3 T13: -0.1373 T23: -0.2137 REMARK 3 L TENSOR REMARK 3 L11: 4.4240 L22: 2.1615 REMARK 3 L33: 3.4019 L12: 1.3284 REMARK 3 L13: -2.1440 L23: 1.0286 REMARK 3 S TENSOR REMARK 3 S11: 0.1534 S12: 0.0629 S13: 0.2985 REMARK 3 S21: -0.0070 S22: -0.3675 S23: 0.3526 REMARK 3 S31: -0.0168 S32: -0.6003 S33: 0.2141 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 371 A 603 REMARK 3 ORIGIN FOR THE GROUP (A): 33.9792 1.5448 20.4808 REMARK 3 T TENSOR REMARK 3 T11: -0.3462 T22: -0.2103 REMARK 3 T33: -0.2216 T12: -0.0453 REMARK 3 T13: -0.0536 T23: -0.1154 REMARK 3 L TENSOR REMARK 3 L11: 2.7110 L22: 4.9355 REMARK 3 L33: 2.5634 L12: -1.4857 REMARK 3 L13: -0.5910 L23: 1.9134 REMARK 3 S TENSOR REMARK 3 S11: 0.0327 S12: -0.3758 S13: 0.7795 REMARK 3 S21: -0.3308 S22: 0.1402 S23: -0.2810 REMARK 3 S31: -0.3657 S32: 0.3928 S33: -0.1729 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 604 A 890 REMARK 3 ORIGIN FOR THE GROUP (A): 21.5739 -17.4078 -3.4122 REMARK 3 T TENSOR REMARK 3 T11: -0.2390 T22: -0.3587 REMARK 3 T33: -0.3323 T12: -0.1062 REMARK 3 T13: -0.0440 T23: 0.0120 REMARK 3 L TENSOR REMARK 3 L11: 2.9432 L22: 1.2911 REMARK 3 L33: 3.5759 L12: -0.5393 REMARK 3 L13: 0.7315 L23: -0.2507 REMARK 3 S TENSOR REMARK 3 S11: -0.2591 S12: 0.2822 S13: 0.4027 REMARK 3 S21: -0.0843 S22: 0.1852 S23: 0.1764 REMARK 3 S31: 0.0208 S32: -0.1228 S33: 0.0739 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 68 B 79 REMARK 3 ORIGIN FOR THE GROUP (A): 21.0998 -0.0339 23.0440 REMARK 3 T TENSOR REMARK 3 T11: -0.0708 T22: 0.0114 REMARK 3 T33: -0.0120 T12: 0.0023 REMARK 3 T13: -0.0135 T23: -0.0767 REMARK 3 L TENSOR REMARK 3 L11: 36.0005 L22: 6.9176 REMARK 3 L33: 12.2602 L12: -11.4245 REMARK 3 L13: 0.2054 L23: -0.2214 REMARK 3 S TENSOR REMARK 3 S11: -1.2717 S12: -0.9360 S13: -2.3566 REMARK 3 S21: 0.9093 S22: 1.3937 S23: 2.0543 REMARK 3 S31: 1.7641 S32: -1.7162 S33: -0.1220 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2Z5K COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 19-JUL-07. REMARK 100 THE DEPOSITION ID IS D_1000027548. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-FEB-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 9.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : AR-NW12A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 35538 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.3 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.04400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.70 REMARK 200 COMPLETENESS FOR SHELL (%) : 87.4 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.30800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2Z5O REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.14 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.94 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M CAPSO PH 9.8, 16-20% (W/V) PEG REMARK 280 8000, 0.1M KCL, 0.1M NAH2PO4, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 297K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 34.82150 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 73.92650 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 59.86850 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 73.92650 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 34.82150 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 59.86850 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1520 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 38590 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -11.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLU A 2 REMARK 465 TYR A 3 REMARK 465 GLU A 4 REMARK 465 GLY A 320 REMARK 465 ASP A 321 REMARK 465 VAL A 322 REMARK 465 GLU A 323 REMARK 465 GLU A 324 REMARK 465 ASP A 325 REMARK 465 GLU A 326 REMARK 465 THR A 327 REMARK 465 ILE A 328 REMARK 465 PRO A 329 REMARK 465 ASP A 330 REMARK 465 SER A 331 REMARK 465 GLU A 332 REMARK 465 GLN A 333 REMARK 465 ASP A 334 REMARK 465 ILE A 335 REMARK 465 ARG A 336 REMARK 465 PRO A 337 REMARK 465 ARG A 338 REMARK 465 PHE A 339 REMARK 465 HIS A 340 REMARK 465 ARG A 341 REMARK 465 SER A 342 REMARK 465 ARG A 343 REMARK 465 THR A 344 REMARK 465 VAL A 345 REMARK 465 ALA A 346 REMARK 465 GLN A 347 REMARK 465 GLN A 348 REMARK 465 HIS A 349 REMARK 465 ASP A 350 REMARK 465 GLU A 351 REMARK 465 ASP A 352 REMARK 465 GLY A 353 REMARK 465 ILE A 354 REMARK 465 GLU A 355 REMARK 465 GLU A 356 REMARK 465 GLU A 357 REMARK 465 ASP A 358 REMARK 465 ASP A 359 REMARK 465 ASP A 360 REMARK 465 ASP A 361 REMARK 465 ASP A 362 REMARK 465 GLU A 363 REMARK 465 ILE A 364 REMARK 465 ASP A 365 REMARK 465 GLU B 53 REMARK 465 GLU B 54 REMARK 465 ASP B 55 REMARK 465 ASP B 56 REMARK 465 GLY B 57 REMARK 465 ASP B 58 REMARK 465 VAL B 59 REMARK 465 ALA B 60 REMARK 465 MET B 61 REMARK 465 SER B 62 REMARK 465 ASP B 63 REMARK 465 ALA B 64 REMARK 465 GLN B 65 REMARK 465 ASP B 66 REMARK 465 GLY B 67 REMARK 465 ASN B 80 REMARK 465 ARG B 81 REMARK 465 ARG B 82 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 PHE A 80 CG PHE A 80 CD2 0.136 REMARK 500 PHE A 80 CG PHE A 80 CD1 0.127 REMARK 500 PHE A 80 CZ PHE A 80 CE2 0.169 REMARK 500 GLU A 882 CD GLU A 882 OE2 0.257 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 8 107.04 63.60 REMARK 500 LEU A 37 -71.65 -85.76 REMARK 500 HIS A 79 33.87 86.09 REMARK 500 GLU A 122 -79.72 7.22 REMARK 500 LEU A 123 55.70 166.30 REMARK 500 ASP A 169 -169.47 85.92 REMARK 500 ARG A 170 78.45 -116.14 REMARK 500 SER A 204 7.51 -66.93 REMARK 500 ARG A 205 52.25 32.58 REMARK 500 VAL A 245 -60.24 -101.11 REMARK 500 ARG A 246 72.68 -116.66 REMARK 500 CYS A 289 -53.96 -19.26 REMARK 500 LEU A 318 -87.51 -75.61 REMARK 500 ARG A 391 -131.88 54.78 REMARK 500 HIS A 408 137.58 -37.44 REMARK 500 PRO A 437 -6.94 -58.47 REMARK 500 SER A 456 -78.23 -45.86 REMARK 500 CYS A 512 -134.06 50.61 REMARK 500 GLN A 534 -88.49 -53.01 REMARK 500 HIS A 535 -50.63 -156.90 REMARK 500 GLN A 598 -121.15 45.10 REMARK 500 ARG A 665 39.61 -93.02 REMARK 500 LEU A 717 32.50 -91.84 REMARK 500 PHE A 721 75.77 -100.94 REMARK 500 VAL B 70 -34.09 -159.86 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 22 DISTANCE = 7.80 ANGSTROMS REMARK 525 HOH B 26 DISTANCE = 5.98 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 891 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1QBK RELATED DB: PDB REMARK 900 STRUCTURE OF THE KARYOPHERIN BETA2-RAN GPPNHP NUCLEAR TRANSPORT REMARK 900 COMPLEX REMARK 900 RELATED ID: 2H4M RELATED DB: PDB REMARK 900 KARYOPHERIN BETA2/TRANSPORTIN-M9NLS REMARK 900 RELATED ID: 2OT8 RELATED DB: PDB REMARK 900 KARYOPHERIN BETA2/TRANSPORTIN-HNRNPM NLS COMPLEX REMARK 900 RELATED ID: 2Z5J RELATED DB: PDB REMARK 900 FREE TRANSPORTIN 1 REMARK 900 RELATED ID: 2Z5M RELATED DB: PDB REMARK 900 COMPLEX OF TRANSPORTIN 1 WITH TAP NLS, CRYSTAL FORM 2 REMARK 900 RELATED ID: 2Z5N RELATED DB: PDB REMARK 900 COMPLEX OF TRANSPORTIN 1 WITH HNRNP D NLS REMARK 900 RELATED ID: 2Z5O RELATED DB: PDB REMARK 900 COMPLEX OF TRANSPORTIN 1 WITH JKTBP NLS DBREF 2Z5K A 1 890 UNP Q92973 TNPO1_HUMAN 1 890 DBREF 2Z5K B 53 82 UNP Q9UBU9 NXF1_HUMAN 53 82 SEQRES 1 A 890 MET GLU TYR GLU TRP LYS PRO ASP GLU GLN GLY LEU GLN SEQRES 2 A 890 GLN ILE LEU GLN LEU LEU LYS GLU SER GLN SER PRO ASP SEQRES 3 A 890 THR THR ILE GLN ARG THR VAL GLN GLN LYS LEU GLU GLN SEQRES 4 A 890 LEU ASN GLN TYR PRO ASP PHE ASN ASN TYR LEU ILE PHE SEQRES 5 A 890 VAL LEU THR LYS LEU LYS SER GLU ASP GLU PRO THR ARG SEQRES 6 A 890 SER LEU SER GLY LEU ILE LEU LYS ASN ASN VAL LYS ALA SEQRES 7 A 890 HIS PHE GLN ASN PHE PRO ASN GLY VAL THR ASP PHE ILE SEQRES 8 A 890 LYS SER GLU CYS LEU ASN ASN ILE GLY ASP SER SER PRO SEQRES 9 A 890 LEU ILE ARG ALA THR VAL GLY ILE LEU ILE THR THR ILE SEQRES 10 A 890 ALA SER LYS GLY GLU LEU GLN ASN TRP PRO ASP LEU LEU SEQRES 11 A 890 PRO LYS LEU CYS SER LEU LEU ASP SER GLU ASP TYR ASN SEQRES 12 A 890 THR CYS GLU GLY ALA PHE GLY ALA LEU GLN LYS ILE CYS SEQRES 13 A 890 GLU ASP SER ALA GLU ILE LEU ASP SER ASP VAL LEU ASP SEQRES 14 A 890 ARG PRO LEU ASN ILE MET ILE PRO LYS PHE LEU GLN PHE SEQRES 15 A 890 PHE LYS HIS SER SER PRO LYS ILE ARG SER HIS ALA VAL SEQRES 16 A 890 ALA CYS VAL ASN GLN PHE ILE ILE SER ARG THR GLN ALA SEQRES 17 A 890 LEU MET LEU HIS ILE ASP SER PHE ILE GLU ASN LEU PHE SEQRES 18 A 890 ALA LEU ALA GLY ASP GLU GLU PRO GLU VAL ARG LYS ASN SEQRES 19 A 890 VAL CYS ARG ALA LEU VAL MET LEU LEU GLU VAL ARG MET SEQRES 20 A 890 ASP ARG LEU LEU PRO HIS MET HIS ASN ILE VAL GLU TYR SEQRES 21 A 890 MET LEU GLN ARG THR GLN ASP GLN ASP GLU ASN VAL ALA SEQRES 22 A 890 LEU GLU ALA CYS GLU PHE TRP LEU THR LEU ALA GLU GLN SEQRES 23 A 890 PRO ILE CYS LYS ASP VAL LEU VAL ARG HIS LEU PRO LYS SEQRES 24 A 890 LEU ILE PRO VAL LEU VAL ASN GLY MET LYS TYR SER ASP SEQRES 25 A 890 ILE ASP ILE ILE LEU LEU LYS GLY ASP VAL GLU GLU ASP SEQRES 26 A 890 GLU THR ILE PRO ASP SER GLU GLN ASP ILE ARG PRO ARG SEQRES 27 A 890 PHE HIS ARG SER ARG THR VAL ALA GLN GLN HIS ASP GLU SEQRES 28 A 890 ASP GLY ILE GLU GLU GLU ASP ASP ASP ASP ASP GLU ILE SEQRES 29 A 890 ASP ASP ASP ASP THR ILE SER ASP TRP ASN LEU ARG LYS SEQRES 30 A 890 CYS SER ALA ALA ALA LEU ASP VAL LEU ALA ASN VAL TYR SEQRES 31 A 890 ARG ASP GLU LEU LEU PRO HIS ILE LEU PRO LEU LEU LYS SEQRES 32 A 890 GLU LEU LEU PHE HIS HIS GLU TRP VAL VAL LYS GLU SER SEQRES 33 A 890 GLY ILE LEU VAL LEU GLY ALA ILE ALA GLU GLY CYS MET SEQRES 34 A 890 GLN GLY MET ILE PRO TYR LEU PRO GLU LEU ILE PRO HIS SEQRES 35 A 890 LEU ILE GLN CYS LEU SER ASP LYS LYS ALA LEU VAL ARG SEQRES 36 A 890 SER ILE THR CYS TRP THR LEU SER ARG TYR ALA HIS TRP SEQRES 37 A 890 VAL VAL SER GLN PRO PRO ASP THR TYR LEU LYS PRO LEU SEQRES 38 A 890 MET THR GLU LEU LEU LYS ARG ILE LEU ASP SER ASN LYS SEQRES 39 A 890 ARG VAL GLN GLU ALA ALA CYS SER ALA PHE ALA THR LEU SEQRES 40 A 890 GLU GLU GLU ALA CYS THR GLU LEU VAL PRO TYR LEU ALA SEQRES 41 A 890 TYR ILE LEU ASP THR LEU VAL PHE ALA PHE SER LYS TYR SEQRES 42 A 890 GLN HIS LYS ASN LEU LEU ILE LEU TYR ASP ALA ILE GLY SEQRES 43 A 890 THR LEU ALA ASP SER VAL GLY HIS HIS LEU ASN LYS PRO SEQRES 44 A 890 GLU TYR ILE GLN MET LEU MET PRO PRO LEU ILE GLN LYS SEQRES 45 A 890 TRP ASN MET LEU LYS ASP GLU ASP LYS ASP LEU PHE PRO SEQRES 46 A 890 LEU LEU GLU CYS LEU SER SER VAL ALA THR ALA LEU GLN SEQRES 47 A 890 SER GLY PHE LEU PRO TYR CYS GLU PRO VAL TYR GLN ARG SEQRES 48 A 890 CYS VAL ASN LEU VAL GLN LYS THR LEU ALA GLN ALA MET SEQRES 49 A 890 LEU ASN ASN ALA GLN PRO ASP GLN TYR GLU ALA PRO ASP SEQRES 50 A 890 LYS ASP PHE MET ILE VAL ALA LEU ASP LEU LEU SER GLY SEQRES 51 A 890 LEU ALA GLU GLY LEU GLY GLY ASN ILE GLU GLN LEU VAL SEQRES 52 A 890 ALA ARG SER ASN ILE LEU THR LEU MET TYR GLN CYS MET SEQRES 53 A 890 GLN ASP LYS MET PRO GLU VAL ARG GLN SER SER PHE ALA SEQRES 54 A 890 LEU LEU GLY ASP LEU THR LYS ALA CYS PHE GLN HIS VAL SEQRES 55 A 890 LYS PRO CYS ILE ALA ASP PHE MET PRO ILE LEU GLY THR SEQRES 56 A 890 ASN LEU ASN PRO GLU PHE ILE SER VAL CYS ASN ASN ALA SEQRES 57 A 890 THR TRP ALA ILE GLY GLU ILE SER ILE GLN MET GLY ILE SEQRES 58 A 890 GLU MET GLN PRO TYR ILE PRO MET VAL LEU HIS GLN LEU SEQRES 59 A 890 VAL GLU ILE ILE ASN ARG PRO ASN THR PRO LYS THR LEU SEQRES 60 A 890 LEU GLU ASN THR ALA ILE THR ILE GLY ARG LEU GLY TYR SEQRES 61 A 890 VAL CYS PRO GLN GLU VAL ALA PRO MET LEU GLN GLN PHE SEQRES 62 A 890 ILE ARG PRO TRP CYS THR SER LEU ARG ASN ILE ARG ASP SEQRES 63 A 890 ASN GLU GLU LYS ASP SER ALA PHE ARG GLY ILE CYS THR SEQRES 64 A 890 MET ILE SER VAL ASN PRO SER GLY VAL ILE GLN ASP PHE SEQRES 65 A 890 ILE PHE PHE CYS ASP ALA VAL ALA SER TRP ILE ASN PRO SEQRES 66 A 890 LYS ASP ASP LEU ARG ASP MET PHE CYS LYS ILE LEU HIS SEQRES 67 A 890 GLY PHE LYS ASN GLN VAL GLY ASP GLU ASN TRP ARG ARG SEQRES 68 A 890 PHE SER ASP GLN PHE PRO LEU PRO LEU LYS GLU ARG LEU SEQRES 69 A 890 ALA ALA PHE TYR GLY VAL SEQRES 1 B 30 GLU GLU ASP ASP GLY ASP VAL ALA MET SER ASP ALA GLN SEQRES 2 B 30 ASP GLY PRO ARG VAL ARG TYR ASN PRO TYR THR THR ARG SEQRES 3 B 30 PRO ASN ARG ARG HET PO4 A 891 5 HETNAM PO4 PHOSPHATE ION FORMUL 3 PO4 O4 P 3- FORMUL 4 HOH *28(H2 O) HELIX 1 1 ASP A 8 GLU A 21 1 14 HELIX 2 2 SER A 22 SER A 24 5 3 HELIX 3 3 ASP A 26 GLN A 39 1 14 HELIX 4 4 LEU A 40 TYR A 43 5 4 HELIX 5 5 ASP A 45 LYS A 56 1 12 HELIX 6 6 ASP A 61 ALA A 78 1 18 HELIX 7 7 PRO A 84 ASN A 97 1 14 HELIX 8 8 SER A 103 GLY A 121 1 19 HELIX 9 9 ASP A 128 LEU A 137 1 10 HELIX 10 10 ASP A 141 SER A 159 1 19 HELIX 11 11 SER A 159 SER A 165 1 7 HELIX 12 12 PRO A 171 PHE A 182 1 12 HELIX 13 13 PHE A 183 HIS A 185 5 3 HELIX 14 14 SER A 187 ASN A 199 1 13 HELIX 15 15 GLN A 200 ILE A 202 5 3 HELIX 16 16 THR A 206 LEU A 211 1 6 HELIX 17 17 HIS A 212 ALA A 224 1 13 HELIX 18 18 GLU A 228 ARG A 246 1 19 HELIX 19 19 LEU A 250 PRO A 252 5 3 HELIX 20 20 HIS A 253 GLN A 266 1 14 HELIX 21 21 ASP A 269 GLN A 286 1 18 HELIX 22 22 ILE A 288 LEU A 293 1 6 HELIX 23 23 HIS A 296 MET A 308 1 13 HELIX 24 24 SER A 311 LYS A 319 1 9 HELIX 25 25 ASN A 374 ARG A 391 1 18 HELIX 26 26 LEU A 394 PHE A 407 1 14 HELIX 27 27 GLU A 410 ILE A 424 1 15 HELIX 28 28 MET A 432 PRO A 434 5 3 HELIX 29 29 TYR A 435 LEU A 447 1 13 HELIX 30 30 LYS A 451 ARG A 464 1 14 HELIX 31 31 TYR A 465 SER A 471 1 7 HELIX 32 32 TYR A 477 LEU A 490 1 14 HELIX 33 33 ASN A 493 CYS A 512 1 20 HELIX 34 34 THR A 513 PRO A 517 5 5 HELIX 35 35 TYR A 518 SER A 531 1 14 HELIX 36 36 HIS A 535 GLY A 553 1 19 HELIX 37 37 HIS A 554 ASN A 557 5 4 HELIX 38 38 LYS A 558 LEU A 576 1 19 HELIX 39 39 ASP A 582 GLN A 598 1 17 HELIX 40 40 PHE A 601 ALA A 628 1 28 HELIX 41 41 LYS A 638 GLY A 656 1 19 HELIX 42 42 ILE A 659 ARG A 665 1 7 HELIX 43 43 ASN A 667 MET A 676 1 10 HELIX 44 44 MET A 680 CYS A 698 1 19 HELIX 45 45 CYS A 698 LYS A 703 1 6 HELIX 46 46 CYS A 705 THR A 715 1 11 HELIX 47 47 PHE A 721 GLY A 740 1 20 HELIX 48 48 ILE A 741 GLN A 744 5 4 HELIX 49 49 TYR A 746 ASN A 759 1 14 HELIX 50 50 PRO A 764 CYS A 782 1 19 HELIX 51 51 CYS A 782 ALA A 787 1 6 HELIX 52 52 MET A 789 ARG A 802 1 14 HELIX 53 53 ASN A 807 ASN A 824 1 18 HELIX 54 54 PRO A 825 GLN A 830 5 6 HELIX 55 55 ASP A 831 SER A 841 1 11 HELIX 56 56 LYS A 846 GLY A 865 1 20 HELIX 57 57 GLY A 865 ASP A 874 1 10 HELIX 58 58 PRO A 877 TYR A 888 1 12 SITE 1 AC1 2 HIS A 554 HIS A 555 CRYST1 69.643 119.737 147.853 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014359 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008352 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006763 0.00000