HEADER OXIDOREDUCTASE 17-JUL-07 2Z5U TITLE CRYSTAL STRUCTURE OF LYSINE-SPECIFIC HISTONE DEMETHYLASE 1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: LYSINE-SPECIFIC HISTONE DEMETHYLASE 1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: LSD1, RESIDUES 172-833; COMPND 5 SYNONYM: FLAVIN-CONTAINING AMINE OXIDASE DOMAIN-CONTAINING PROTEIN 2, COMPND 6 BRAF35-HDAC COMPLEX PROTEIN BHC110; COMPND 7 EC: 1.-.-.-; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: KIAA0601, LSD1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PGEX-HS-6P KEYWDS CHROMATIN, HISTONE DEMETHYLASE, NUCLEOSOME, TRANSCRIPTION, LSD1, KEYWDS 2 LYSINE-SPECIFIC, CHROMATIN REGULATOR, FAD, NUCLEUS, OXIDOREDUCTASE, KEYWDS 3 PHOSPHORYLATION, REPRESSOR, TRANSCRIPTION REGULATION, STRUCTURAL KEYWDS 4 GENOMICS, NPPSFA, NATIONAL PROJECT ON PROTEIN STRUCTURAL AND KEYWDS 5 FUNCTIONAL ANALYSES, RIKEN STRUCTURAL GENOMICS/PROTEOMICS KEYWDS 6 INITIATIVE, RSGI EXPDTA X-RAY DIFFRACTION AUTHOR S.MIMASU,T.SENGOKU,S.YOKOYAMA,RIKEN STRUCTURAL GENOMICS/PROTEOMICS AUTHOR 2 INITIATIVE (RSGI) REVDAT 7 01-NOV-23 2Z5U 1 REMARK REVDAT 6 25-DEC-19 2Z5U 1 REMARK REVDAT 5 27-MAR-13 2Z5U 1 HET HETATM HETNAM VERSN REVDAT 4 24-FEB-09 2Z5U 1 VERSN REVDAT 3 24-JUN-08 2Z5U 1 JRNL REVDAT 2 15-APR-08 2Z5U 1 HETATM REVDAT 1 01-APR-08 2Z5U 0 JRNL AUTH S.MIMASU,T.SENGOKU,S.FUKUZAWA,T.UMEHARA,S.YOKOYAMA JRNL TITL CRYSTAL STRUCTURE OF HISTONE DEMETHYLASE LSD1 AND JRNL TITL 2 TRANYLCYPROMINE AT 2.25 A JRNL REF BIOCHEM.BIOPHYS.RES.COMMUN. V. 366 15 2008 JRNL REFN ISSN 0006-291X JRNL PMID 18039463 JRNL DOI 10.1016/J.BBRC.2007.11.066 REMARK 2 REMARK 2 RESOLUTION. 2.25 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.25 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.36 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 97.7 REMARK 3 NUMBER OF REFLECTIONS : 48969 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.225 REMARK 3 FREE R VALUE : 0.254 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 2551 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.25 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.39 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 91.10 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.3130 REMARK 3 BIN FREE R VALUE : 0.3220 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : 381 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5044 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 63 REMARK 3 SOLVENT ATOMS : 130 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 31.40 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.32 REMARK 3 ESD FROM SIGMAA (A) : 0.34 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.33 REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.007 REMARK 3 BOND ANGLES (DEGREES) : 1.300 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 22.50 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.950 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.350 ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2Z5U COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 24-JUL-07. REMARK 100 THE DEPOSITION ID IS D_1000027558. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-MAY-07 REMARK 200 TEMPERATURE (KELVIN) : 298 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL41XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 51520 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.250 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.7 REMARK 200 DATA REDUNDANCY : 3.600 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.07500 REMARK 200 FOR THE DATA SET : 21.9100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.25 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.39 REMARK 200 COMPLETENESS FOR SHELL (%) : 91.1 REMARK 200 DATA REDUNDANCY IN SHELL : 3.20 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.32000 REMARK 200 FOR SHELL : 11.30 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: PDB ENTRY 2EJR REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 66.55 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.68 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1MM HEPES-NA, 5% MPD, 3-4.5% PEG REMARK 280 MONOMETHYLETHER 2000, 1MM DTT, PH 7.5, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 277.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 36.24733 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 72.49467 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 54.37100 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 90.61833 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 18.12367 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 36.24733 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 72.49467 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 90.61833 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 54.37100 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 18.12367 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 465 REMARK 465 SER A 466 REMARK 465 GLU A 467 REMARK 465 VAL A 468 REMARK 465 LYS A 469 REMARK 465 PRO A 470 REMARK 465 PRO A 471 REMARK 465 ARG A 472 REMARK 465 ASP A 473 REMARK 465 GLY A 783 REMARK 465 PRO A 784 REMARK 465 SER A 785 REMARK 465 ILE A 786 REMARK 465 PRO A 787 REMARK 465 GLY A 788 REMARK 465 ALA A 789 REMARK 465 PRO A 790 REMARK 465 GLN A 791 REMARK 465 ALA A 832 REMARK 465 MET A 833 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 782 C - N - CA ANGL. DEV. = -10.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 201 68.80 -100.01 REMARK 500 ASN A 224 74.28 -153.20 REMARK 500 LYS A 271 79.76 -106.87 REMARK 500 THR A 335 45.62 -85.75 REMARK 500 HIS A 394 49.62 -98.19 REMARK 500 GLN A 395 -53.49 -169.88 REMARK 500 ASP A 397 49.99 37.04 REMARK 500 ASN A 403 -0.56 66.32 REMARK 500 GLN A 460 147.08 169.86 REMARK 500 GLN A 461 -57.27 81.07 REMARK 500 TYR A 462 93.21 -59.33 REMARK 500 LYS A 463 48.47 158.29 REMARK 500 ALA A 476 -30.64 -39.60 REMARK 500 TYR A 494 -78.28 -59.59 REMARK 500 ASP A 495 -9.25 -53.33 REMARK 500 THR A 500 1.93 -69.85 REMARK 500 GLU A 512 6.08 -67.74 REMARK 500 GLU A 559 150.58 -49.95 REMARK 500 SER A 598 34.92 -141.69 REMARK 500 SER A 609 78.25 -157.51 REMARK 500 THR A 610 -0.33 -52.21 REMARK 500 PRO A 701 81.39 -67.28 REMARK 500 SER A 738 -21.46 79.98 REMARK 500 ALA A 757 -53.97 -133.15 REMARK 500 PRO A 794 120.39 -35.07 REMARK 500 TYR A 807 47.53 -142.02 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FAJ A 1 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2EJR RELATED DB: PDB REMARK 900 THE SAME PROTEIN COMPLEXED WITH ANOTHER DRAG REMARK 900 RELATED ID: 2Z3Y RELATED DB: PDB REMARK 900 THE SAME PROTEIN COMPLEXED WITH ANOTHER DRAG DBREF 2Z5U A 172 833 UNP O60341 LSD1_HUMAN 172 833 SEQRES 1 A 662 SER GLY VAL GLU GLY ALA ALA PHE GLN SER ARG LEU PRO SEQRES 2 A 662 HIS ASP ARG MET THR SER GLN GLU ALA ALA CYS PHE PRO SEQRES 3 A 662 ASP ILE ILE SER GLY PRO GLN GLN THR GLN LYS VAL PHE SEQRES 4 A 662 LEU PHE ILE ARG ASN ARG THR LEU GLN LEU TRP LEU ASP SEQRES 5 A 662 ASN PRO LYS ILE GLN LEU THR PHE GLU ALA THR LEU GLN SEQRES 6 A 662 GLN LEU GLU ALA PRO TYR ASN SER ASP THR VAL LEU VAL SEQRES 7 A 662 HIS ARG VAL HIS SER TYR LEU GLU ARG HIS GLY LEU ILE SEQRES 8 A 662 ASN PHE GLY ILE TYR LYS ARG ILE LYS PRO LEU PRO THR SEQRES 9 A 662 LYS LYS THR GLY LYS VAL ILE ILE ILE GLY SER GLY VAL SEQRES 10 A 662 SER GLY LEU ALA ALA ALA ARG GLN LEU GLN SER PHE GLY SEQRES 11 A 662 MET ASP VAL THR LEU LEU GLU ALA ARG ASP ARG VAL GLY SEQRES 12 A 662 GLY ARG VAL ALA THR PHE ARG LYS GLY ASN TYR VAL ALA SEQRES 13 A 662 ASP LEU GLY ALA MET VAL VAL THR GLY LEU GLY GLY ASN SEQRES 14 A 662 PRO MET ALA VAL VAL SER LYS GLN VAL ASN MET GLU LEU SEQRES 15 A 662 ALA LYS ILE LYS GLN LYS CYS PRO LEU TYR GLU ALA ASN SEQRES 16 A 662 GLY GLN ALA VAL PRO LYS GLU LYS ASP GLU MET VAL GLU SEQRES 17 A 662 GLN GLU PHE ASN ARG LEU LEU GLU ALA THR SER TYR LEU SEQRES 18 A 662 SER HIS GLN LEU ASP PHE ASN VAL LEU ASN ASN LYS PRO SEQRES 19 A 662 VAL SER LEU GLY GLN ALA LEU GLU VAL VAL ILE GLN LEU SEQRES 20 A 662 GLN GLU LYS HIS VAL LYS ASP GLU GLN ILE GLU HIS TRP SEQRES 21 A 662 LYS LYS ILE VAL LYS THR GLN GLU GLU LEU LYS GLU LEU SEQRES 22 A 662 LEU ASN LYS MET VAL ASN LEU LYS GLU LYS ILE LYS GLU SEQRES 23 A 662 LEU HIS GLN GLN TYR LYS GLU ALA SER GLU VAL LYS PRO SEQRES 24 A 662 PRO ARG ASP ILE THR ALA GLU PHE LEU VAL LYS SER LYS SEQRES 25 A 662 HIS ARG ASP LEU THR ALA LEU CYS LYS GLU TYR ASP GLU SEQRES 26 A 662 LEU ALA GLU THR GLN GLY LYS LEU GLU GLU LYS LEU GLN SEQRES 27 A 662 GLU LEU GLU ALA ASN PRO PRO SER ASP VAL TYR LEU SER SEQRES 28 A 662 SER ARG ASP ARG GLN ILE LEU ASP TRP HIS PHE ALA ASN SEQRES 29 A 662 LEU GLU PHE ALA ASN ALA THR PRO LEU SER THR LEU SER SEQRES 30 A 662 LEU LYS HIS TRP ASP GLN ASP ASP ASP PHE GLU PHE THR SEQRES 31 A 662 GLY SER HIS LEU THR VAL ARG ASN GLY TYR SER CYS VAL SEQRES 32 A 662 PRO VAL ALA LEU ALA GLU GLY LEU ASP ILE LYS LEU ASN SEQRES 33 A 662 THR ALA VAL ARG GLN VAL ARG TYR THR ALA SER GLY CYS SEQRES 34 A 662 GLU VAL ILE ALA VAL ASN THR ARG SER THR SER GLN THR SEQRES 35 A 662 PHE ILE TYR LYS CYS ASP ALA VAL LEU CYS THR LEU PRO SEQRES 36 A 662 LEU GLY VAL LEU LYS GLN GLN PRO PRO ALA VAL GLN PHE SEQRES 37 A 662 VAL PRO PRO LEU PRO GLU TRP LYS THR SER ALA VAL GLN SEQRES 38 A 662 ARG MET GLY PHE GLY ASN LEU ASN LYS VAL VAL LEU CYS SEQRES 39 A 662 PHE ASP ARG VAL PHE TRP ASP PRO SER VAL ASN LEU PHE SEQRES 40 A 662 GLY HIS VAL GLY SER THR THR ALA SER ARG GLY GLU LEU SEQRES 41 A 662 PHE LEU PHE TRP ASN LEU TYR LYS ALA PRO ILE LEU LEU SEQRES 42 A 662 ALA LEU VAL ALA GLY GLU ALA ALA GLY ILE MET GLU ASN SEQRES 43 A 662 ILE SER ASP ASP VAL ILE VAL GLY ARG CYS LEU ALA ILE SEQRES 44 A 662 LEU LYS GLY ILE PHE GLY SER SER ALA VAL PRO GLN PRO SEQRES 45 A 662 LYS GLU THR VAL VAL SER ARG TRP ARG ALA ASP PRO TRP SEQRES 46 A 662 ALA ARG GLY SER TYR SER TYR VAL ALA ALA GLY SER SER SEQRES 47 A 662 GLY ASN ASP TYR ASP LEU MET ALA GLN PRO ILE THR PRO SEQRES 48 A 662 GLY PRO SER ILE PRO GLY ALA PRO GLN PRO ILE PRO ARG SEQRES 49 A 662 LEU PHE PHE ALA GLY GLU HIS THR ILE ARG ASN TYR PRO SEQRES 50 A 662 ALA THR VAL HIS GLY ALA LEU LEU SER GLY LEU ARG GLU SEQRES 51 A 662 ALA GLY ARG ILE ALA ASP GLN PHE LEU GLY ALA MET HET FAJ A 1 63 HETNAM FAJ FAD-TRANS-2-PHENYLCYCLOPROPYLAMINE ADDUCT HETSYN FAJ FAD-PCPA ADDUCT FORMUL 2 FAJ C36 H43 N9 O16 P2 FORMUL 3 HOH *130(H2 O) HELIX 1 1 SER A 172 SER A 181 1 10 HELIX 2 2 THR A 189 PHE A 196 1 8 HELIX 3 3 PHE A 196 SER A 201 1 6 HELIX 4 4 PRO A 203 ASP A 223 1 21 HELIX 5 5 THR A 230 LEU A 238 1 9 HELIX 6 6 PRO A 241 SER A 244 5 4 HELIX 7 7 ASP A 245 HIS A 259 1 15 HELIX 8 8 GLY A 287 PHE A 300 1 14 HELIX 9 9 ASN A 340 ASN A 350 1 11 HELIX 10 10 PRO A 371 HIS A 394 1 24 HELIX 11 11 SER A 407 GLU A 457 1 51 HELIX 12 12 THR A 475 THR A 488 1 14 HELIX 13 13 LEU A 490 ALA A 498 1 9 HELIX 14 14 ALA A 498 GLU A 512 1 15 HELIX 15 15 SER A 522 ALA A 541 1 20 HELIX 16 16 PRO A 543 LEU A 547 5 5 HELIX 17 17 ASP A 555 GLU A 559 5 5 HELIX 18 18 SER A 572 ALA A 579 1 8 HELIX 19 19 PRO A 626 GLN A 632 1 7 HELIX 20 20 PRO A 644 MET A 654 1 11 HELIX 21 21 ALA A 708 GLU A 716 1 9 HELIX 22 22 SER A 719 GLY A 736 1 18 HELIX 23 23 GLY A 770 GLN A 778 1 9 HELIX 24 24 GLY A 800 ILE A 804 5 5 HELIX 25 25 THR A 810 LEU A 830 1 21 SHEET 1 A 5 ILE A 584 LYS A 585 0 SHEET 2 A 5 ASP A 303 LEU A 307 1 N LEU A 306 O LYS A 585 SHEET 3 A 5 LYS A 280 ILE A 284 1 N VAL A 281 O ASP A 303 SHEET 4 A 5 ALA A 620 CYS A 623 1 O LEU A 622 N ILE A 284 SHEET 5 A 5 LEU A 796 PHE A 798 1 O PHE A 797 N VAL A 621 SHEET 1 B 2 THR A 319 LYS A 322 0 SHEET 2 B 2 TYR A 325 ASP A 328 -1 O ALA A 327 N PHE A 320 SHEET 1 C 3 VAL A 333 VAL A 334 0 SHEET 2 C 3 LEU A 565 VAL A 567 -1 O LEU A 565 N VAL A 334 SHEET 3 C 3 LEU A 353 LYS A 355 -1 N ALA A 354 O THR A 566 SHEET 1 D 6 LEU A 362 TYR A 363 0 SHEET 2 D 6 LEU A 677 HIS A 680 1 O GLY A 679 N TYR A 363 SHEET 3 D 6 LEU A 693 ASN A 696 -1 O PHE A 694 N PHE A 678 SHEET 4 D 6 ILE A 702 VAL A 707 -1 O LEU A 704 N TRP A 695 SHEET 5 D 6 ASN A 660 CYS A 665 -1 N LEU A 664 O LEU A 703 SHEET 6 D 6 GLU A 745 VAL A 748 -1 O VAL A 747 N VAL A 663 SHEET 1 E 2 VAL A 400 LEU A 401 0 SHEET 2 E 2 LYS A 404 PRO A 405 -1 O LYS A 404 N LEU A 401 SHEET 1 F 4 THR A 613 CYS A 618 0 SHEET 2 F 4 GLY A 599 ASN A 606 -1 N CYS A 600 O CYS A 618 SHEET 3 F 4 THR A 588 THR A 596 -1 N ARG A 594 O GLU A 601 SHEET 4 F 4 GLN A 638 VAL A 640 1 O GLN A 638 N ARG A 591 SHEET 1 G 2 GLY A 655 PHE A 656 0 SHEET 2 G 2 SER A 762 TYR A 763 -1 O TYR A 763 N GLY A 655 CISPEP 1 ALA A 240 PRO A 241 0 -0.02 CISPEP 2 GLN A 633 PRO A 634 0 -0.18 CISPEP 3 VAL A 640 PRO A 641 0 0.01 SITE 1 AC1 38 ILE A 284 GLY A 285 GLY A 287 VAL A 288 SITE 2 AC1 38 SER A 289 LEU A 307 GLU A 308 ALA A 309 SITE 3 AC1 38 ARG A 310 GLY A 314 GLY A 315 ARG A 316 SITE 4 AC1 38 LEU A 329 GLY A 330 ALA A 331 MET A 332 SITE 5 AC1 38 VAL A 333 THR A 335 THR A 588 VAL A 590 SITE 6 AC1 38 THR A 624 LEU A 625 PRO A 626 VAL A 637 SITE 7 AC1 38 TRP A 751 TRP A 756 TYR A 761 GLY A 800 SITE 8 AC1 38 GLU A 801 ALA A 809 THR A 810 VAL A 811 SITE 9 AC1 38 ALA A 814 HOH A 839 HOH A 847 HOH A 891 SITE 10 AC1 38 HOH A 892 HOH A 916 CRYST1 185.759 185.759 108.742 90.00 90.00 120.00 P 61 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005383 0.003108 0.000000 0.00000 SCALE2 0.000000 0.006216 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009196 0.00000