HEADER IMMUNE SYSTEM 22-JUL-07 2Z62 TITLE CRYSTAL STRUCTURE OF THE TV3 HYBRID OF HUMAN TLR4 AND HAGFISH VLRB.61 COMPND MOL_ID: 1; COMPND 2 MOLECULE: TOLL-LIKE RECEPTOR 4, VARIABLE LYMPHOCYTE RECEPTOR B; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: TLR4, UNP RESIDUES 27-228(HUMAN), VLRB.61, UNP RESIDUES COMPND 5 128-199(INSHORE HAGFISH); COMPND 6 SYNONYM: HTOLL, CD284 ANTIGEN, TV3; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS, EPTATRETUS BURGERI; SOURCE 3 ORGANISM_COMMON: HUMAN, INSHORE HAGFISH; SOURCE 4 ORGANISM_TAXID: 9606, 7764; SOURCE 5 GENE: TLR4, VLRB.61; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: HI-5; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PVL1393 KEYWDS TLR, TOLL-LIKE RECEPTOR, VLR HYBRID, MD-2, LPS, GLYCOPROTEIN, IMMUNE KEYWDS 2 RESPONSE, INFLAMMATORY RESPONSE, INNATE IMMUNITY, LEUCINE-RICH KEYWDS 3 REPEAT, MEMBRANE, TRANSMEMBRANE, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR J.-O.LEE,H.M.KIM,B.S.PARK REVDAT 7 01-NOV-23 2Z62 1 HETSYN REVDAT 6 29-JUL-20 2Z62 1 COMPND REMARK HETNAM LINK REVDAT 6 2 1 SITE ATOM REVDAT 5 09-AUG-17 2Z62 1 SOURCE REMARK REVDAT 4 13-JUL-11 2Z62 1 VERSN REVDAT 3 21-JUL-10 2Z62 1 REMARK REVDAT 2 24-FEB-09 2Z62 1 VERSN REVDAT 1 18-SEP-07 2Z62 0 JRNL AUTH H.M.KIM,B.S.PARK,J.-I.KIM,S.E.KIM,J.LEE,S.C.OH,P.ENKHBAYAR, JRNL AUTH 2 N.MATSUSHIMA,H.LEE,O.J.YOO,J.-O.LEE JRNL TITL CRYSTAL STRUCTURE OF THE TLR4-MD-2 COMPLEX WITH BOUND JRNL TITL 2 ENDOTOXIN ANTAGONIST ERITORAN JRNL REF CELL(CAMBRIDGE,MASS.) V. 130 906 2007 JRNL REFN ISSN 0092-8674 JRNL PMID 17803912 JRNL DOI 10.1016/J.CELL.2007.08.002 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.0 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 29573 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.190 REMARK 3 R VALUE (WORKING SET) : 0.190 REMARK 3 FREE R VALUE : 0.208 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1588 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.74 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2115 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.03 REMARK 3 BIN R VALUE (WORKING SET) : 0.2500 REMARK 3 BIN FREE R VALUE SET COUNT : 119 REMARK 3 BIN FREE R VALUE : 0.2810 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2189 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 115 REMARK 3 SOLVENT ATOMS : 242 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.12 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.21000 REMARK 3 B22 (A**2) : -0.50000 REMARK 3 B33 (A**2) : 0.71000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.120 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.106 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.070 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.122 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.955 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.954 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2365 ; 0.007 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3228 ; 1.188 ; 2.039 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 275 ; 5.275 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 98 ;40.843 ;25.306 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 397 ;13.485 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 8 ;19.356 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 392 ; 0.078 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1695 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1036 ; 0.197 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1586 ; 0.317 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 165 ; 0.108 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 88 ; 0.235 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 35 ; 0.304 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 27 A 302 REMARK 3 ORIGIN FOR THE GROUP (A): 14.1091 0.0140 8.4018 REMARK 3 T TENSOR REMARK 3 T11: -0.1279 T22: -0.1238 REMARK 3 T33: -0.1232 T12: -0.0089 REMARK 3 T13: 0.0125 T23: -0.0137 REMARK 3 L TENSOR REMARK 3 L11: 0.7018 L22: 0.9486 REMARK 3 L33: 1.4983 L12: -0.5953 REMARK 3 L13: 0.6968 L23: -0.8044 REMARK 3 S TENSOR REMARK 3 S11: 0.0109 S12: -0.0051 S13: -0.0144 REMARK 3 S21: -0.0411 S22: 0.0111 S23: 0.0300 REMARK 3 S31: 0.0289 S32: -0.0639 S33: -0.0220 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2Z62 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 24-JUL-07. REMARK 100 THE DEPOSITION ID IS D_1000027566. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-OCT-06 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 5.50 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PAL/PLS REMARK 200 BEAMLINE : 4A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : SAGITALLY FOCUSED SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29573 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 200 DATA REDUNDANCY : 6.600 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.06000 REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1ZIW REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.89 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.23 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M NACL, 0.1M BIS-TRIS PROPANE, 33% REMARK 280 PEG 1000, PH 5.50, VAPOR DIFFUSION, TEMPERATURE 296K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 21.97250 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 58.31850 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 27.10700 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 58.31850 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 21.97250 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 27.10700 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: AUTHOR DETERMINED BIOLOGICAL UNIT: UNKNOWN REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 323 O HOH A 538 1.67 REMARK 500 OD1 ASN A 64 O HOH A 538 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 369 O HOH A 536 4555 1.81 REMARK 500 O2 FUL B 4 O HOH A 503 1455 1.90 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 35 -5.17 71.12 REMARK 500 ILE A 36 -51.74 -128.68 REMARK 500 ARG A 67 -45.63 67.88 REMARK 500 LEU A 101 58.65 -93.52 REMARK 500 ASN A 160 -159.80 -129.15 REMARK 500 ASN A 185 -152.19 -113.46 REMARK 500 GLU A 225 15.01 56.71 REMARK 500 ASN A 236 -147.17 -105.66 REMARK 500 REMARK 500 REMARK: NULL REMARK 600 REMARK 600 HETEROGEN REMARK 600 REMARK 600 POLYSACCHARIDES WERE ORIGINALLY ASSIGNED TO CHAINS M(701-703), REMARK 600 N(801-804), AND L(901-902), RESPECTIVELY. REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2Z63 RELATED DB: PDB REMARK 900 THE TV8 HYBRID OF HUMAN TLR4 AND HAGFISH VLRB.61 REMARK 900 RELATED ID: 2Z64 RELATED DB: PDB REMARK 900 THE MOUSE TLR4 AND MOUSE MD-2 COMPLEX REMARK 900 RELATED ID: 2Z65 RELATED DB: PDB REMARK 900 THE HUMAN TLR4 TV3 HYBRID-MD-2-ERITORAN COMPLEX REMARK 900 RELATED ID: 2Z66 RELATED DB: PDB REMARK 900 THE VT3 HYBRID OF HUMAN TLR4 AND HAGFISH VLRB.61 REMARK 999 REMARK 999 SEQUENCE REMARK 999 THIS CONSTRUCT INCLUDES A LINKER THAT CONSIST OF 229TH LYS AND REMARK 999 230TH GLU. DBREF 2Z62 A 27 228 UNP O00206 TLR4_HUMAN 27 228 DBREF 2Z62 A 231 302 UNP Q4G1L2 Q4G1L2_EPTBU 128 199 SEQADV 2Z62 LYS A 229 UNP O00206 SEE REMARK 999 SEQADV 2Z62 GLU A 230 UNP O00206 SEE REMARK 999 SEQRES 1 A 276 GLU PRO CYS VAL GLU VAL VAL PRO ASN ILE THR TYR GLN SEQRES 2 A 276 CYS MET GLU LEU ASN PHE TYR LYS ILE PRO ASP ASN LEU SEQRES 3 A 276 PRO PHE SER THR LYS ASN LEU ASP LEU SER PHE ASN PRO SEQRES 4 A 276 LEU ARG HIS LEU GLY SER TYR SER PHE PHE SER PHE PRO SEQRES 5 A 276 GLU LEU GLN VAL LEU ASP LEU SER ARG CYS GLU ILE GLN SEQRES 6 A 276 THR ILE GLU ASP GLY ALA TYR GLN SER LEU SER HIS LEU SEQRES 7 A 276 SER THR LEU ILE LEU THR GLY ASN PRO ILE GLN SER LEU SEQRES 8 A 276 ALA LEU GLY ALA PHE SER GLY LEU SER SER LEU GLN LYS SEQRES 9 A 276 LEU VAL ALA VAL GLU THR ASN LEU ALA SER LEU GLU ASN SEQRES 10 A 276 PHE PRO ILE GLY HIS LEU LYS THR LEU LYS GLU LEU ASN SEQRES 11 A 276 VAL ALA HIS ASN LEU ILE GLN SER PHE LYS LEU PRO GLU SEQRES 12 A 276 TYR PHE SER ASN LEU THR ASN LEU GLU HIS LEU ASP LEU SEQRES 13 A 276 SER SER ASN LYS ILE GLN SER ILE TYR CYS THR ASP LEU SEQRES 14 A 276 ARG VAL LEU HIS GLN MET PRO LEU LEU ASN LEU SER LEU SEQRES 15 A 276 ASP LEU SER LEU ASN PRO MET ASN PHE ILE GLN PRO GLY SEQRES 16 A 276 ALA PHE LYS GLU ILE ARG LEU LYS GLU LEU ALA LEU ASP SEQRES 17 A 276 THR ASN GLN LEU LYS SER VAL PRO ASP GLY ILE PHE ASP SEQRES 18 A 276 ARG LEU THR SER LEU GLN LYS ILE TRP LEU HIS THR ASN SEQRES 19 A 276 PRO TRP ASP CYS SER CYS PRO ARG ILE ASP TYR LEU SER SEQRES 20 A 276 ARG TRP LEU ASN LYS ASN SER GLN LYS GLU GLN GLY SER SEQRES 21 A 276 ALA LYS CYS SER GLY SER GLY LYS PRO VAL ARG SER ILE SEQRES 22 A 276 ILE CYS PRO MODRES 2Z62 ASN A 35 ASN GLYCOSYLATION SITE MODRES 2Z62 ASN A 173 ASN GLYCOSYLATION SITE MODRES 2Z62 ASN A 205 ASN GLYCOSYLATION SITE HET NAG B 1 14 HET NAG B 2 14 HET BMA B 3 11 HET FUL B 4 10 HET NAG C 1 14 HET NAG C 2 14 HET FUL C 3 10 HET NAG D 1 14 HET NAG D 2 14 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM BMA BETA-D-MANNOPYRANOSE HETNAM FUL BETA-L-FUCOPYRANOSE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN BMA BETA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN FUL BETA-L-FUCOSE; 6-DEOXY-BETA-L-GALACTOPYRANOSE; L- HETSYN 2 FUL FUCOSE; FUCOSE; 6-DEOXY-BETA-L-GALACTOSE FORMUL 2 NAG 6(C8 H15 N O6) FORMUL 2 BMA C6 H12 O6 FORMUL 2 FUL 2(C6 H12 O5) FORMUL 5 HOH *242(H2 O) HELIX 1 1 PRO A 168 LEU A 174 5 7 HELIX 2 2 TYR A 191 ASP A 194 5 4 HELIX 3 3 LEU A 195 GLN A 200 1 6 HELIX 4 4 ILE A 269 ASN A 279 1 11 HELIX 5 5 SER A 280 GLU A 283 5 4 HELIX 6 6 PRO A 295 ILE A 299 5 5 SHEET 1 A11 VAL A 30 VAL A 33 0 SHEET 2 A11 THR A 37 GLN A 39 -1 O GLN A 39 N VAL A 30 SHEET 3 A11 ASN A 58 ASP A 60 1 O ASN A 58 N TYR A 38 SHEET 4 A11 VAL A 82 ASP A 84 1 O ASP A 84 N LEU A 59 SHEET 5 A11 THR A 106 ILE A 108 1 O ILE A 108 N LEU A 83 SHEET 6 A11 LYS A 130 VAL A 132 1 O VAL A 132 N LEU A 107 SHEET 7 A11 GLU A 154 ASN A 156 1 O ASN A 156 N LEU A 131 SHEET 8 A11 HIS A 179 ASP A 181 1 O HIS A 179 N LEU A 155 SHEET 9 A11 LEU A 206 ASP A 209 1 O SER A 207 N LEU A 180 SHEET 10 A11 LEU A 228 ALA A 232 1 O GLU A 230 N LEU A 208 SHEET 11 A11 LYS A 254 TRP A 256 1 O TRP A 256 N LEU A 231 SHEET 1 B 3 HIS A 68 LEU A 69 0 SHEET 2 B 3 THR A 92 ILE A 93 1 O THR A 92 N LEU A 69 SHEET 3 B 3 SER A 116 LEU A 117 1 O SER A 116 N ILE A 93 SHEET 1 C 2 SER A 189 ILE A 190 0 SHEET 2 C 2 PHE A 217 ILE A 218 1 O PHE A 217 N ILE A 190 SSBOND 1 CYS A 29 CYS A 40 1555 1555 2.05 SSBOND 2 CYS A 264 CYS A 289 1555 1555 2.02 SSBOND 3 CYS A 266 CYS A 301 1555 1555 2.04 LINK ND2 ASN A 35 C1 NAG C 1 1555 1555 1.44 LINK ND2 ASN A 173 C1 NAG B 1 1555 1555 1.45 LINK ND2 ASN A 205 C1 NAG D 1 1555 1555 1.45 LINK O4 NAG B 1 C1 NAG B 2 1555 1555 1.45 LINK O6 NAG B 1 C1 FUL B 4 1555 1555 1.44 LINK O4 NAG B 2 C1 BMA B 3 1555 1555 1.45 LINK O4 NAG C 1 C1 NAG C 2 1555 1555 1.44 LINK O6 NAG C 1 C1 FUL C 3 1555 1555 1.45 LINK O4 NAG D 1 C1 NAG D 2 1555 1555 1.44 CISPEP 1 CYS A 266 PRO A 267 0 5.07 CRYST1 43.945 54.214 116.637 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022756 0.000000 0.000000 0.00000 SCALE2 0.000000 0.018445 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008574 0.00000