HEADER IMMUNE SYSTEM 22-JUL-07 2Z63 TITLE CRYSTAL STRUCTURE OF THE TV8 HYBRID OF HUMAN TLR4 AND HAGFISH VLRB.61 COMPND MOL_ID: 1; COMPND 2 MOLECULE: TOLL-LIKE RECEPTOR 4, VARIABLE LYMPHOCYTE RECEPTOR B; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: TLR4, UNP RESIDUES 27-527(HUMAN), VLRB.61, UNP RESIDUES COMPND 5 133-199(INSHORE HAGFISH); COMPND 6 SYNONYM: HTOLL, CD284 ANTIGEN, TV8; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS, EPTATRETUS BURGERI; SOURCE 3 ORGANISM_COMMON: HUMAN, INSHORE HAGFISH; SOURCE 4 ORGANISM_TAXID: 9606, 7764; SOURCE 5 GENE: TLR4, VLRB.61; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: HI-5; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PVL1393 KEYWDS TLR4, TOLL-LIKE RECEPTOR, MD-2, LPS, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR H.M.KIM,B.S.PARK,J.-O.LEE REVDAT 8 13-NOV-24 2Z63 1 REMARK REVDAT 7 01-NOV-23 2Z63 1 HETSYN REVDAT 6 29-JUL-20 2Z63 1 COMPND REMARK HETNAM LINK REVDAT 6 2 1 SITE ATOM REVDAT 5 09-AUG-17 2Z63 1 SOURCE REMARK REVDAT 4 13-JUL-11 2Z63 1 VERSN REVDAT 3 21-JUL-10 2Z63 1 REMARK REVDAT 2 24-FEB-09 2Z63 1 VERSN REVDAT 1 18-SEP-07 2Z63 0 JRNL AUTH H.M.KIM,B.S.PARK,J.-I.KIM,S.E.KIM,J.LEE,S.C.OH,P.ENKHBAYAR, JRNL AUTH 2 N.MATSUSHIMA,H.LEE,O.J.YOO,J.-O.LEE JRNL TITL CRYSTAL STRUCTURE OF THE TLR4-MD-2 COMPLEX WITH BOUND JRNL TITL 2 ENDOTOXIN ANTAGONIST ERITORAN JRNL REF CELL(CAMBRIDGE,MASS.) V. 130 906 2007 JRNL REFN ISSN 0092-8674 JRNL PMID 17803912 JRNL DOI 10.1016/J.CELL.2007.08.002 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.0 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 95.8 REMARK 3 NUMBER OF REFLECTIONS : 48960 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.251 REMARK 3 R VALUE (WORKING SET) : 0.250 REMARK 3 FREE R VALUE : 0.298 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2622 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.06 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2528 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 67.37 REMARK 3 BIN R VALUE (WORKING SET) : 0.2870 REMARK 3 BIN FREE R VALUE SET COUNT : 136 REMARK 3 BIN FREE R VALUE : 0.3540 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4536 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 66 REMARK 3 SOLVENT ATOMS : 292 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 32.30 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.49000 REMARK 3 B22 (A**2) : -0.49000 REMARK 3 B33 (A**2) : 0.73000 REMARK 3 B12 (A**2) : -0.24000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.213 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.195 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.172 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 11.892 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.893 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.855 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4707 ; 0.011 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6384 ; 1.380 ; 1.987 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 569 ; 4.994 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 216 ;40.341 ;25.046 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 822 ;16.458 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 18 ;13.751 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 740 ; 0.092 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3486 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2049 ; 0.226 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 3082 ; 0.319 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 301 ; 0.156 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 49 ; 0.211 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 23 ; 0.233 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2940 ; 1.535 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4600 ; 2.161 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1978 ; 3.818 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1784 ; 5.344 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 27 A 198 REMARK 3 ORIGIN FOR THE GROUP (A): 36.6788 -23.7399 4.2832 REMARK 3 T TENSOR REMARK 3 T11: -0.0624 T22: -0.0333 REMARK 3 T33: -0.1074 T12: 0.0338 REMARK 3 T13: 0.0127 T23: 0.0268 REMARK 3 L TENSOR REMARK 3 L11: 2.1206 L22: 1.9992 REMARK 3 L33: 1.1697 L12: 0.5256 REMARK 3 L13: 0.5187 L23: 0.3776 REMARK 3 S TENSOR REMARK 3 S11: 0.0002 S12: 0.0013 S13: 0.1023 REMARK 3 S21: 0.0802 S22: -0.0138 S23: -0.1733 REMARK 3 S31: -0.1081 S32: 0.1737 S33: 0.0136 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 199 A 348 REMARK 3 ORIGIN FOR THE GROUP (A): 5.9241 -36.6346 0.3541 REMARK 3 T TENSOR REMARK 3 T11: -0.0505 T22: -0.1041 REMARK 3 T33: -0.0629 T12: -0.0138 REMARK 3 T13: 0.0292 T23: -0.0384 REMARK 3 L TENSOR REMARK 3 L11: 1.3441 L22: 1.9743 REMARK 3 L33: 1.3236 L12: -0.5943 REMARK 3 L13: -0.4742 L23: -0.2298 REMARK 3 S TENSOR REMARK 3 S11: -0.0124 S12: 0.0811 S13: -0.2778 REMARK 3 S21: -0.0580 S22: -0.0280 S23: 0.2066 REMARK 3 S31: 0.2333 S32: -0.0790 S33: 0.0404 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 349 A 596 REMARK 3 ORIGIN FOR THE GROUP (A): -4.7521 -2.0889 19.4915 REMARK 3 T TENSOR REMARK 3 T11: -0.1251 T22: -0.1204 REMARK 3 T33: -0.1624 T12: 0.0072 REMARK 3 T13: 0.0132 T23: -0.0024 REMARK 3 L TENSOR REMARK 3 L11: 0.8080 L22: 2.1941 REMARK 3 L33: 0.7391 L12: 0.4185 REMARK 3 L13: 0.0830 L23: 0.3655 REMARK 3 S TENSOR REMARK 3 S11: 0.0003 S12: -0.0700 S13: 0.0813 REMARK 3 S21: 0.0807 S22: -0.0967 S23: 0.2155 REMARK 3 S31: -0.0109 S32: -0.0939 S33: 0.0964 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2Z63 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 26-JUL-07. REMARK 100 THE DEPOSITION ID IS D_1000027567. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-APR-07 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 6.50 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL41XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : SAGITALLY FOCUSED SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 48960 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.0 REMARK 200 DATA REDUNDANCY : 3.100 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.08000 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2Z62 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.64 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.21 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M SODIUM CITRATE, 0.1M BIS-TRIS REMARK 280 PROPANE, 27% PEG 1000, PH 6.50, VAPOR DIFFUSION, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 30.73500 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 61.47000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: AUTHOR DETERMINED BIOLOGICAL UNIT: UNKNOWN REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 35 16.75 44.98 REMARK 500 ILE A 36 -55.07 -132.82 REMARK 500 CYS A 40 39.13 -82.31 REMARK 500 GLU A 42 77.80 27.61 REMARK 500 PRO A 65 65.35 -57.27 REMARK 500 ARG A 67 -61.82 68.54 REMARK 500 GLU A 89 48.70 25.88 REMARK 500 THR A 110 126.28 -27.67 REMARK 500 ASN A 137 28.08 42.08 REMARK 500 ASN A 160 -161.17 -115.19 REMARK 500 ASN A 185 -148.37 -111.05 REMARK 500 PRO A 214 71.70 -69.43 REMARK 500 GLU A 225 16.28 59.51 REMARK 500 GLU A 266 -71.15 -106.86 REMARK 500 ALA A 276 -13.64 -43.79 REMARK 500 ILE A 300 -54.50 -133.53 REMARK 500 GLU A 321 -68.59 -108.74 REMARK 500 LYS A 324 18.06 -154.41 REMARK 500 SER A 327 77.67 -65.43 REMARK 500 TYR A 328 -141.10 -122.57 REMARK 500 PHE A 330 136.58 -39.03 REMARK 500 ASN A 365 40.96 -77.51 REMARK 500 ASN A 409 -166.92 -122.53 REMARK 500 SER A 415 -33.33 -143.57 REMARK 500 SER A 441 78.84 -112.75 REMARK 500 ALA A 462 -68.73 -142.16 REMARK 500 LEU A 470 51.63 -92.31 REMARK 500 MET A 478 30.26 -142.02 REMARK 500 ASN A 481 -157.87 -93.17 REMARK 500 LEU A 495 54.96 -95.64 REMARK 500 ASN A 530 -161.67 -114.68 REMARK 500 ASP A 541 -39.91 -39.78 REMARK 500 CYS A 558 42.96 -96.48 REMARK 500 REMARK 500 REMARK: NULL REMARK 600 REMARK 600 HETEROGEN REMARK 600 REMARK 600 POLYSACCHARIDES WERE ORIGINALLY ASSIGNED TO CHAINS M(1411-1412) AND REMARK 600 N(1401-1403), RESPECTIVELY. REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2Z62 RELATED DB: PDB REMARK 900 THE TV3 HYBRID OF HUMAN TLR4 AND HAGFISH VLRB.61 REMARK 900 RELATED ID: 2Z64 RELATED DB: PDB REMARK 900 THE MOUSE TLR4 AND MOUSE MD-2 COMPLEX REMARK 900 RELATED ID: 2Z65 RELATED DB: PDB REMARK 900 THE HUMAN TLR4 TV3 HYBRID-MD-2-ERITORAN COMPLEX REMARK 900 RELATED ID: 2Z66 RELATED DB: PDB REMARK 900 THE VT3 HYBRID OF HUMAN TLR4 AND HAGFISH VLRB.61 REMARK 999 REMARK 999 SEQUENCE REMARK 999 THIS CONSTRUCT INCLUDES A LINKER THAT CONSIST OF 528TH ALA AND REMARK 999 529TH SER. DBREF 2Z63 A 27 527 UNP O00206 TLR4_HUMAN 27 527 DBREF 2Z63 A 530 596 UNP Q4G1L2 Q4G1L2_EPTBU 133 199 SEQADV 2Z63 ALA A 528 UNP O00206 SEE REMARK 999 SEQADV 2Z63 SER A 529 UNP O00206 SEE REMARK 999 SEQRES 1 A 570 GLU PRO CYS VAL GLU VAL VAL PRO ASN ILE THR TYR GLN SEQRES 2 A 570 CYS MET GLU LEU ASN PHE TYR LYS ILE PRO ASP ASN LEU SEQRES 3 A 570 PRO PHE SER THR LYS ASN LEU ASP LEU SER PHE ASN PRO SEQRES 4 A 570 LEU ARG HIS LEU GLY SER TYR SER PHE PHE SER PHE PRO SEQRES 5 A 570 GLU LEU GLN VAL LEU ASP LEU SER ARG CYS GLU ILE GLN SEQRES 6 A 570 THR ILE GLU ASP GLY ALA TYR GLN SER LEU SER HIS LEU SEQRES 7 A 570 SER THR LEU ILE LEU THR GLY ASN PRO ILE GLN SER LEU SEQRES 8 A 570 ALA LEU GLY ALA PHE SER GLY LEU SER SER LEU GLN LYS SEQRES 9 A 570 LEU VAL ALA VAL GLU THR ASN LEU ALA SER LEU GLU ASN SEQRES 10 A 570 PHE PRO ILE GLY HIS LEU LYS THR LEU LYS GLU LEU ASN SEQRES 11 A 570 VAL ALA HIS ASN LEU ILE GLN SER PHE LYS LEU PRO GLU SEQRES 12 A 570 TYR PHE SER ASN LEU THR ASN LEU GLU HIS LEU ASP LEU SEQRES 13 A 570 SER SER ASN LYS ILE GLN SER ILE TYR CYS THR ASP LEU SEQRES 14 A 570 ARG VAL LEU HIS GLN MET PRO LEU LEU ASN LEU SER LEU SEQRES 15 A 570 ASP LEU SER LEU ASN PRO MET ASN PHE ILE GLN PRO GLY SEQRES 16 A 570 ALA PHE LYS GLU ILE ARG LEU HIS LYS LEU THR LEU ARG SEQRES 17 A 570 ASN ASN PHE ASP SER LEU ASN VAL MET LYS THR CYS ILE SEQRES 18 A 570 GLN GLY LEU ALA GLY LEU GLU VAL HIS ARG LEU VAL LEU SEQRES 19 A 570 GLY GLU PHE ARG ASN GLU GLY ASN LEU GLU LYS PHE ASP SEQRES 20 A 570 LYS SER ALA LEU GLU GLY LEU CYS ASN LEU THR ILE GLU SEQRES 21 A 570 GLU PHE ARG LEU ALA TYR LEU ASP TYR TYR LEU ASP ASP SEQRES 22 A 570 ILE ILE ASP LEU PHE ASN CYS LEU THR ASN VAL SER SER SEQRES 23 A 570 PHE SER LEU VAL SER VAL THR ILE GLU ARG VAL LYS ASP SEQRES 24 A 570 PHE SER TYR ASN PHE GLY TRP GLN HIS LEU GLU LEU VAL SEQRES 25 A 570 ASN CYS LYS PHE GLY GLN PHE PRO THR LEU LYS LEU LYS SEQRES 26 A 570 SER LEU LYS ARG LEU THR PHE THR SER ASN LYS GLY GLY SEQRES 27 A 570 ASN ALA PHE SER GLU VAL ASP LEU PRO SER LEU GLU PHE SEQRES 28 A 570 LEU ASP LEU SER ARG ASN GLY LEU SER PHE LYS GLY CYS SEQRES 29 A 570 CYS SER GLN SER ASP PHE GLY THR THR SER LEU LYS TYR SEQRES 30 A 570 LEU ASP LEU SER PHE ASN GLY VAL ILE THR MET SER SER SEQRES 31 A 570 ASN PHE LEU GLY LEU GLU GLN LEU GLU HIS LEU ASP PHE SEQRES 32 A 570 GLN HIS SER ASN LEU LYS GLN MET SER GLU PHE SER VAL SEQRES 33 A 570 PHE LEU SER LEU ARG ASN LEU ILE TYR LEU ASP ILE SER SEQRES 34 A 570 HIS THR HIS THR ARG VAL ALA PHE ASN GLY ILE PHE ASN SEQRES 35 A 570 GLY LEU SER SER LEU GLU VAL LEU LYS MET ALA GLY ASN SEQRES 36 A 570 SER PHE GLN GLU ASN PHE LEU PRO ASP ILE PHE THR GLU SEQRES 37 A 570 LEU ARG ASN LEU THR PHE LEU ASP LEU SER GLN CYS GLN SEQRES 38 A 570 LEU GLU GLN LEU SER PRO THR ALA PHE ASN SER LEU SER SEQRES 39 A 570 SER LEU GLN VAL LEU ASN MET ALA SER ASN GLN LEU LYS SEQRES 40 A 570 SER VAL PRO ASP GLY ILE PHE ASP ARG LEU THR SER LEU SEQRES 41 A 570 GLN LYS ILE TRP LEU HIS THR ASN PRO TRP ASP CYS SER SEQRES 42 A 570 CYS PRO ARG ILE ASP TYR LEU SER ARG TRP LEU ASN LYS SEQRES 43 A 570 ASN SER GLN LYS GLU GLN GLY SER ALA LYS CYS SER GLY SEQRES 44 A 570 SER GLY LYS PRO VAL ARG SER ILE ILE CYS PRO MODRES 2Z63 ASN A 497 ASN GLYCOSYLATION SITE MODRES 2Z63 ASN A 309 ASN GLYCOSYLATION SITE HET NAG B 1 14 HET NAG B 2 14 HET FUL B 3 10 HET NAG C 1 14 HET NAG C 2 14 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM FUL BETA-L-FUCOPYRANOSE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN FUL BETA-L-FUCOSE; 6-DEOXY-BETA-L-GALACTOPYRANOSE; L- HETSYN 2 FUL FUCOSE; FUCOSE; 6-DEOXY-BETA-L-GALACTOSE FORMUL 2 NAG 4(C8 H15 N O6) FORMUL 2 FUL C6 H12 O5 FORMUL 4 HOH *292(H2 O) HELIX 1 1 PRO A 168 LEU A 174 5 7 HELIX 2 2 TYR A 191 ASP A 194 5 4 HELIX 3 3 LEU A 195 GLN A 200 1 6 HELIX 4 4 ASN A 241 GLY A 249 1 9 HELIX 5 5 LEU A 277 LEU A 283 5 7 HELIX 6 6 PHE A 304 THR A 308 5 5 HELIX 7 7 GLN A 393 GLY A 397 1 5 HELIX 8 8 ILE A 563 ASN A 573 1 11 HELIX 9 9 PRO A 589 ILE A 593 5 5 SHEET 1 A24 VAL A 30 VAL A 33 0 SHEET 2 A24 THR A 37 GLN A 39 -1 O THR A 37 N VAL A 33 SHEET 3 A24 ASN A 58 ASP A 60 1 O ASP A 60 N TYR A 38 SHEET 4 A24 VAL A 82 ASP A 84 1 O VAL A 82 N LEU A 59 SHEET 5 A24 THR A 106 ILE A 108 1 O ILE A 108 N LEU A 83 SHEET 6 A24 LYS A 130 VAL A 132 1 O VAL A 132 N LEU A 107 SHEET 7 A24 GLU A 154 ASN A 156 1 O GLU A 154 N LEU A 131 SHEET 8 A24 HIS A 179 ASP A 181 1 O ASP A 181 N LEU A 155 SHEET 9 A24 SER A 207 ASP A 209 1 O SER A 207 N LEU A 180 SHEET 10 A24 ARG A 227 ARG A 234 1 O LYS A 230 N LEU A 208 SHEET 11 A24 GLU A 254 GLU A 262 1 O VAL A 259 N LEU A 231 SHEET 12 A24 THR A 284 TYR A 292 1 O THR A 284 N VAL A 255 SHEET 13 A24 SER A 312 VAL A 316 1 O SER A 312 N PHE A 288 SHEET 14 A24 HIS A 334 VAL A 338 1 O GLU A 336 N LEU A 315 SHEET 15 A24 ARG A 355 THR A 359 1 O THR A 357 N LEU A 337 SHEET 16 A24 PHE A 377 ASP A 379 1 O ASP A 379 N PHE A 358 SHEET 17 A24 TYR A 403 ASP A 405 1 O ASP A 405 N LEU A 378 SHEET 18 A24 HIS A 426 ASP A 428 1 O ASP A 428 N LEU A 404 SHEET 19 A24 TYR A 451 ASP A 453 1 O TYR A 451 N LEU A 427 SHEET 20 A24 VAL A 475 LYS A 477 1 O VAL A 475 N LEU A 452 SHEET 21 A24 PHE A 500 ASP A 502 1 O PHE A 500 N LEU A 476 SHEET 22 A24 VAL A 524 ASN A 526 1 O ASN A 526 N LEU A 501 SHEET 23 A24 LYS A 548 TRP A 550 1 O TRP A 550 N LEU A 525 SHEET 24 A24 GLU A 577 GLN A 578 1 O GLN A 578 N ILE A 549 SHEET 1 B 3 HIS A 68 LEU A 69 0 SHEET 2 B 3 THR A 92 ILE A 93 1 O THR A 92 N LEU A 69 SHEET 3 B 3 SER A 116 LEU A 117 1 O SER A 116 N ILE A 93 SHEET 1 C 2 SER A 189 ILE A 190 0 SHEET 2 C 2 PHE A 217 ILE A 218 1 O PHE A 217 N ILE A 190 SHEET 1 D 3 GLU A 270 LYS A 271 0 SHEET 2 D 3 TYR A 295 LEU A 297 1 O TYR A 296 N GLU A 270 SHEET 3 D 3 THR A 319 ILE A 320 1 O THR A 319 N TYR A 295 SHEET 1 E 3 PHE A 387 SER A 392 0 SHEET 2 E 3 VAL A 411 LEU A 419 1 O THR A 413 N PHE A 387 SHEET 3 E 3 ASN A 433 LYS A 435 1 O ASN A 433 N ILE A 412 SHEET 1 F 2 ARG A 460 VAL A 461 0 SHEET 2 F 2 SER A 482 PHE A 483 1 O SER A 482 N VAL A 461 SHEET 1 G 2 PHE A 487 LEU A 488 0 SHEET 2 G 2 GLN A 510 LEU A 511 1 O GLN A 510 N LEU A 488 SSBOND 1 CYS A 29 CYS A 40 1555 1555 2.06 SSBOND 2 CYS A 281 CYS A 306 1555 1555 2.04 SSBOND 3 CYS A 390 CYS A 391 1555 1555 2.04 SSBOND 4 CYS A 558 CYS A 583 1555 1555 2.00 SSBOND 5 CYS A 560 CYS A 595 1555 1555 2.04 LINK ND2 ASN A 309 C1 NAG B 1 1555 1555 1.45 LINK ND2 ASN A 497 C1 NAG C 1 1555 1555 1.45 LINK O4 NAG B 1 C1 NAG B 2 1555 1555 1.45 LINK O6 NAG B 1 C1 FUL B 3 1555 1555 1.45 LINK O4 NAG C 1 C1 NAG C 2 1555 1555 1.45 CISPEP 1 CYS A 390 CYS A 391 0 -4.27 CISPEP 2 CYS A 560 PRO A 561 0 1.78 CRYST1 88.136 88.136 92.205 90.00 90.00 120.00 P 31 3 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011346 0.006551 0.000000 0.00000 SCALE2 0.000000 0.013101 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010845 0.00000