data_2Z6P # _entry.id 2Z6P # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.279 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 2Z6P RCSB RCSB027589 WWPDB D_1000027589 # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 2Z6O _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2Z6P _pdbx_database_status.recvd_initial_deposition_date 2007-08-06 _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Mizushima , T.' 1 'Tatsumi, K.' 2 'Ozaki, Y.' 3 'Kawakami, T.' 4 'Suzuki, A.' 5 'Ogasahara, K.' 6 'Komatsu, M.' 7 'Kominami, E.' 8 'Tanaka, K.' 9 'Yamane, T.' 10 # _citation.id primary _citation.title 'Crystal structure of Ufc1, the Ufm1-conjugating enzyme' _citation.journal_abbrev Biochem.Biophys.Res.Commun. _citation.journal_volume 362 _citation.page_first 1079 _citation.page_last 1084 _citation.year 2007 _citation.journal_id_ASTM BBRCA9 _citation.country US _citation.journal_id_ISSN 0006-291X _citation.journal_id_CSD 0146 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 17825256 _citation.pdbx_database_id_DOI 10.1016/j.bbrc.2007.08.129 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Mizushima, T.' 1 primary 'Tatsumi, K.' 2 primary 'Ozaki, Y.' 3 primary 'Kawakami, T.' 4 primary 'Suzuki, A.' 5 primary 'Ogasahara, K.' 6 primary 'Komatsu, M.' 7 primary 'Kominami, E.' 8 primary 'Tanaka, K.' 9 primary 'Yamane, T.' 10 # _cell.entry_id 2Z6P _cell.length_a 46.829 _cell.length_b 46.829 _cell.length_c 143.338 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 2Z6P _symmetry.space_group_name_H-M 'P 41 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Ufm1-conjugating enzyme 1' 20038.537 1 6.3.2.19 ? ? ? 2 water nat water 18.015 93 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Ubiquitin-fold modifier-conjugating enzyme 1' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;GPLGS(MSE)ADEATRRVVSEIPVLKTNAGPRDRELWVQRLKEEYQSLIRYVENNKNADNDWFRLESNKEGTRWFGKCWY IHDLLKYEFDIEFDIPITYPTTAPEIAVPELDGKTAK(MSE)YRGGKICLTDHFKPLWARNVPKFGLAHL(MSE)ALGLG PWLAVEIPDLIQKGVIQHKEKCNQ ; _entity_poly.pdbx_seq_one_letter_code_can ;GPLGSMADEATRRVVSEIPVLKTNAGPRDRELWVQRLKEEYQSLIRYVENNKNADNDWFRLESNKEGTRWFGKCWYIHDL LKYEFDIEFDIPITYPTTAPEIAVPELDGKTAKMYRGGKICLTDHFKPLWARNVPKFGLAHLMALGLGPWLAVEIPDLIQ KGVIQHKEKCNQ ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 PRO n 1 3 LEU n 1 4 GLY n 1 5 SER n 1 6 MSE n 1 7 ALA n 1 8 ASP n 1 9 GLU n 1 10 ALA n 1 11 THR n 1 12 ARG n 1 13 ARG n 1 14 VAL n 1 15 VAL n 1 16 SER n 1 17 GLU n 1 18 ILE n 1 19 PRO n 1 20 VAL n 1 21 LEU n 1 22 LYS n 1 23 THR n 1 24 ASN n 1 25 ALA n 1 26 GLY n 1 27 PRO n 1 28 ARG n 1 29 ASP n 1 30 ARG n 1 31 GLU n 1 32 LEU n 1 33 TRP n 1 34 VAL n 1 35 GLN n 1 36 ARG n 1 37 LEU n 1 38 LYS n 1 39 GLU n 1 40 GLU n 1 41 TYR n 1 42 GLN n 1 43 SER n 1 44 LEU n 1 45 ILE n 1 46 ARG n 1 47 TYR n 1 48 VAL n 1 49 GLU n 1 50 ASN n 1 51 ASN n 1 52 LYS n 1 53 ASN n 1 54 ALA n 1 55 ASP n 1 56 ASN n 1 57 ASP n 1 58 TRP n 1 59 PHE n 1 60 ARG n 1 61 LEU n 1 62 GLU n 1 63 SER n 1 64 ASN n 1 65 LYS n 1 66 GLU n 1 67 GLY n 1 68 THR n 1 69 ARG n 1 70 TRP n 1 71 PHE n 1 72 GLY n 1 73 LYS n 1 74 CYS n 1 75 TRP n 1 76 TYR n 1 77 ILE n 1 78 HIS n 1 79 ASP n 1 80 LEU n 1 81 LEU n 1 82 LYS n 1 83 TYR n 1 84 GLU n 1 85 PHE n 1 86 ASP n 1 87 ILE n 1 88 GLU n 1 89 PHE n 1 90 ASP n 1 91 ILE n 1 92 PRO n 1 93 ILE n 1 94 THR n 1 95 TYR n 1 96 PRO n 1 97 THR n 1 98 THR n 1 99 ALA n 1 100 PRO n 1 101 GLU n 1 102 ILE n 1 103 ALA n 1 104 VAL n 1 105 PRO n 1 106 GLU n 1 107 LEU n 1 108 ASP n 1 109 GLY n 1 110 LYS n 1 111 THR n 1 112 ALA n 1 113 LYS n 1 114 MSE n 1 115 TYR n 1 116 ARG n 1 117 GLY n 1 118 GLY n 1 119 LYS n 1 120 ILE n 1 121 CYS n 1 122 LEU n 1 123 THR n 1 124 ASP n 1 125 HIS n 1 126 PHE n 1 127 LYS n 1 128 PRO n 1 129 LEU n 1 130 TRP n 1 131 ALA n 1 132 ARG n 1 133 ASN n 1 134 VAL n 1 135 PRO n 1 136 LYS n 1 137 PHE n 1 138 GLY n 1 139 LEU n 1 140 ALA n 1 141 HIS n 1 142 LEU n 1 143 MSE n 1 144 ALA n 1 145 LEU n 1 146 GLY n 1 147 LEU n 1 148 GLY n 1 149 PRO n 1 150 TRP n 1 151 LEU n 1 152 ALA n 1 153 VAL n 1 154 GLU n 1 155 ILE n 1 156 PRO n 1 157 ASP n 1 158 LEU n 1 159 ILE n 1 160 GLN n 1 161 LYS n 1 162 GLY n 1 163 VAL n 1 164 ILE n 1 165 GLN n 1 166 HIS n 1 167 LYS n 1 168 GLU n 1 169 LYS n 1 170 CYS n 1 171 ASN n 1 172 GLN n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus Homo _entity_src_gen.pdbx_gene_src_gene UFC1 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(RIL)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pGEX6P _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code UFC1_HUMAN _struct_ref.pdbx_db_accession Q9Y3C8 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MADEATRRVVSEIPVLKTNAGPRDRELWVQRLKEEYQSLIRYVENNKNADNDWFRLESNKEGTRWFGKCWYIHDLLKYEF DIEFDIPITYPTTAPEIAVPELDGKTAKMYRGGKICLTDHFKPLWARNVPKFGLAHLMALGLGPWLAVEIPDLIQKGVIQ HKEKCNQ ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2Z6P _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 6 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 172 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q9Y3C8 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 167 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 167 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2Z6P GLY A 1 ? UNP Q9Y3C8 ? ? 'EXPRESSION TAG' -4 1 1 2Z6P PRO A 2 ? UNP Q9Y3C8 ? ? 'EXPRESSION TAG' -3 2 1 2Z6P LEU A 3 ? UNP Q9Y3C8 ? ? 'EXPRESSION TAG' -2 3 1 2Z6P GLY A 4 ? UNP Q9Y3C8 ? ? 'EXPRESSION TAG' -1 4 1 2Z6P SER A 5 ? UNP Q9Y3C8 ? ? 'EXPRESSION TAG' 0 5 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 2Z6P _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 1.96 _exptl_crystal.density_percent_sol 37.27 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.0 _exptl_crystal_grow.pdbx_details '1.5M ammonium sulfate, 0.1M MES pH 7.0, 10%(w/v) dioxan, VAPOR DIFFUSION, HANGING DROP, temperature 293K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'Bruker DIP-6040' _diffrn_detector.pdbx_collection_date 2005-07-23 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.900 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'SPRING-8 BEAMLINE BL44XU' _diffrn_source.pdbx_synchrotron_site SPring-8 _diffrn_source.pdbx_synchrotron_beamline BL44XU _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.900 # _reflns.entry_id 2Z6P _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I -3 _reflns.d_resolution_high 1.80 _reflns.d_resolution_low 44.50 _reflns.number_all ? _reflns.number_obs 15648 _reflns.percent_possible_obs 99.9 _reflns.pdbx_Rmerge_I_obs 0.081 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 20.3 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 10.5 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 1.80 _reflns_shell.d_res_low 1.86 _reflns_shell.percent_possible_all 99.9 _reflns_shell.Rmerge_I_obs 0.332 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 2Z6P _refine.ls_number_reflns_obs 14799 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 44.50 _refine.ls_d_res_high 1.80 _refine.ls_percent_reflns_obs 99.90 _refine.ls_R_factor_obs 0.19976 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.19764 _refine.ls_R_factor_R_free 0.24316 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.0 _refine.ls_number_reflns_R_free 781 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.953 _refine.correlation_coeff_Fo_to_Fc_free 0.937 _refine.B_iso_mean 25.862 _refine.aniso_B[1][1] -0.11 _refine.aniso_B[2][2] -0.11 _refine.aniso_B[3][3] 0.23 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.144 _refine.pdbx_overall_ESU_R_Free 0.139 _refine.overall_SU_ML 0.079 _refine.overall_SU_B 2.444 _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1341 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 93 _refine_hist.number_atoms_total 1434 _refine_hist.d_res_high 1.80 _refine_hist.d_res_low 44.50 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.012 0.022 ? 1378 'X-RAY DIFFRACTION' ? r_bond_other_d ? ? ? ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.344 1.954 ? 1869 'X-RAY DIFFRACTION' ? r_angle_other_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 5.390 5.000 ? 162 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 33.304 23.731 ? 67 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 13.389 15.000 ? 242 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 16.030 15.000 ? 10 'X-RAY DIFFRACTION' ? r_chiral_restr 0.094 0.200 ? 197 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.005 0.020 ? 1052 'X-RAY DIFFRACTION' ? r_gen_planes_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_refined 0.204 0.200 ? 604 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined 0.317 0.200 ? 954 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 0.148 0.200 ? 77 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 0.233 0.200 ? 62 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 0.153 0.200 ? 17 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 1.021 1.500 ? 837 'X-RAY DIFFRACTION' ? r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_it 1.505 2.000 ? 1318 'X-RAY DIFFRACTION' ? r_scbond_it 2.665 3.000 ? 630 'X-RAY DIFFRACTION' ? r_scangle_it 4.187 4.500 ? 551 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.800 _refine_ls_shell.d_res_low 1.847 _refine_ls_shell.number_reflns_R_work 1054 _refine_ls_shell.R_factor_R_work 0.192 _refine_ls_shell.percent_reflns_obs 99.82 _refine_ls_shell.R_factor_R_free 0.25 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 54 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 2Z6P _struct.title 'Crystal Structure of the Ufc1, Ufm1 conjugating enzyme 1' _struct.pdbx_descriptor 'Ufm1-conjugating enzyme 1 (E.C.6.3.2.19)' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2Z6P _struct_keywords.pdbx_keywords LIGASE _struct_keywords.text 'UFC1, UFM1, UBIQUITIN, UBL, Polymorphism, Ubl conjugation pathway, LIGASE' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 MSE A 6 ? SER A 16 ? MSE A 1 SER A 11 1 ? 11 HELX_P HELX_P2 2 ASP A 29 ? ALA A 54 ? ASP A 24 ALA A 49 1 ? 26 HELX_P HELX_P3 3 VAL A 104 ? ASP A 108 ? VAL A 99 ASP A 103 5 ? 5 HELX_P HELX_P4 4 HIS A 125 ? VAL A 134 ? HIS A 120 VAL A 129 1 ? 10 HELX_P HELX_P5 5 GLY A 138 ? GLY A 146 ? GLY A 133 GLY A 141 1 ? 9 HELX_P HELX_P6 6 GLY A 146 ? LYS A 161 ? GLY A 141 LYS A 156 1 ? 16 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale ? ? A MSE 6 C ? ? ? 1_555 A ALA 7 N ? ? A MSE 1 A ALA 2 1_555 ? ? ? ? ? ? ? 1.332 ? covale2 covale ? ? A LYS 113 C ? ? ? 1_555 A MSE 114 N ? ? A LYS 108 A MSE 109 1_555 ? ? ? ? ? ? ? 1.320 ? covale3 covale ? ? A MSE 114 C ? ? ? 1_555 A TYR 115 N ? ? A MSE 109 A TYR 110 1_555 ? ? ? ? ? ? ? 1.331 ? covale4 covale ? ? A LEU 142 C ? ? ? 1_555 A MSE 143 N ? ? A LEU 137 A MSE 138 1_555 ? ? ? ? ? ? ? 1.327 ? covale5 covale ? ? A MSE 143 C ? ? ? 1_555 A ALA 144 N ? ? A MSE 138 A ALA 139 1_555 ? ? ? ? ? ? ? 1.337 ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 TYR 95 A . ? TYR 90 A PRO 96 A ? PRO 91 A 1 4.45 2 VAL 134 A . ? VAL 129 A PRO 135 A ? PRO 130 A 1 2.86 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 3 ? B ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel B 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 PHE A 59 ? SER A 63 ? PHE A 54 SER A 58 A 2 ARG A 69 ? HIS A 78 ? ARG A 64 HIS A 73 A 3 LEU A 81 ? ASP A 90 ? LEU A 76 ASP A 85 B 1 MSE A 114 ? TYR A 115 ? MSE A 109 TYR A 110 B 2 LYS A 119 ? ILE A 120 ? LYS A 114 ILE A 115 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N GLU A 62 ? N GLU A 57 O PHE A 71 ? O PHE A 66 A 2 3 N TRP A 70 ? N TRP A 65 O PHE A 89 ? O PHE A 84 B 1 2 N TYR A 115 ? N TYR A 110 O LYS A 119 ? O LYS A 114 # _database_PDB_matrix.entry_id 2Z6P _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2Z6P _atom_sites.fract_transf_matrix[1][1] 0.021354 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.021354 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.006977 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 -4 ? ? ? A . n A 1 2 PRO 2 -3 ? ? ? A . n A 1 3 LEU 3 -2 ? ? ? A . n A 1 4 GLY 4 -1 ? ? ? A . n A 1 5 SER 5 0 ? ? ? A . n A 1 6 MSE 6 1 1 MSE MSE A . n A 1 7 ALA 7 2 2 ALA ALA A . n A 1 8 ASP 8 3 3 ASP ASP A . n A 1 9 GLU 9 4 4 GLU GLU A . n A 1 10 ALA 10 5 5 ALA ALA A . n A 1 11 THR 11 6 6 THR THR A . n A 1 12 ARG 12 7 7 ARG ARG A . n A 1 13 ARG 13 8 8 ARG ARG A . n A 1 14 VAL 14 9 9 VAL VAL A . n A 1 15 VAL 15 10 10 VAL VAL A . n A 1 16 SER 16 11 11 SER SER A . n A 1 17 GLU 17 12 12 GLU GLU A . n A 1 18 ILE 18 13 13 ILE ILE A . n A 1 19 PRO 19 14 14 PRO PRO A . n A 1 20 VAL 20 15 15 VAL VAL A . n A 1 21 LEU 21 16 16 LEU LEU A . n A 1 22 LYS 22 17 17 LYS LYS A . n A 1 23 THR 23 18 18 THR THR A . n A 1 24 ASN 24 19 19 ASN ASN A . n A 1 25 ALA 25 20 20 ALA ALA A . n A 1 26 GLY 26 21 21 GLY GLY A . n A 1 27 PRO 27 22 22 PRO PRO A . n A 1 28 ARG 28 23 23 ARG ARG A . n A 1 29 ASP 29 24 24 ASP ASP A . n A 1 30 ARG 30 25 25 ARG ARG A . n A 1 31 GLU 31 26 26 GLU GLU A . n A 1 32 LEU 32 27 27 LEU LEU A . n A 1 33 TRP 33 28 28 TRP TRP A . n A 1 34 VAL 34 29 29 VAL VAL A . n A 1 35 GLN 35 30 30 GLN GLN A . n A 1 36 ARG 36 31 31 ARG ARG A . n A 1 37 LEU 37 32 32 LEU LEU A . n A 1 38 LYS 38 33 33 LYS LYS A . n A 1 39 GLU 39 34 34 GLU GLU A . n A 1 40 GLU 40 35 35 GLU GLU A . n A 1 41 TYR 41 36 36 TYR TYR A . n A 1 42 GLN 42 37 37 GLN GLN A . n A 1 43 SER 43 38 38 SER SER A . n A 1 44 LEU 44 39 39 LEU LEU A . n A 1 45 ILE 45 40 40 ILE ILE A . n A 1 46 ARG 46 41 41 ARG ARG A . n A 1 47 TYR 47 42 42 TYR TYR A . n A 1 48 VAL 48 43 43 VAL VAL A . n A 1 49 GLU 49 44 44 GLU GLU A . n A 1 50 ASN 50 45 45 ASN ASN A . n A 1 51 ASN 51 46 46 ASN ASN A . n A 1 52 LYS 52 47 47 LYS LYS A . n A 1 53 ASN 53 48 48 ASN ASN A . n A 1 54 ALA 54 49 49 ALA ALA A . n A 1 55 ASP 55 50 50 ASP ASP A . n A 1 56 ASN 56 51 51 ASN ASN A . n A 1 57 ASP 57 52 52 ASP ASP A . n A 1 58 TRP 58 53 53 TRP TRP A . n A 1 59 PHE 59 54 54 PHE PHE A . n A 1 60 ARG 60 55 55 ARG ARG A . n A 1 61 LEU 61 56 56 LEU LEU A . n A 1 62 GLU 62 57 57 GLU GLU A . n A 1 63 SER 63 58 58 SER SER A . n A 1 64 ASN 64 59 59 ASN ASN A . n A 1 65 LYS 65 60 60 LYS LYS A . n A 1 66 GLU 66 61 61 GLU GLU A . n A 1 67 GLY 67 62 62 GLY GLY A . n A 1 68 THR 68 63 63 THR THR A . n A 1 69 ARG 69 64 64 ARG ARG A . n A 1 70 TRP 70 65 65 TRP TRP A . n A 1 71 PHE 71 66 66 PHE PHE A . n A 1 72 GLY 72 67 67 GLY GLY A . n A 1 73 LYS 73 68 68 LYS LYS A . n A 1 74 CYS 74 69 69 CYS CYS A . n A 1 75 TRP 75 70 70 TRP TRP A . n A 1 76 TYR 76 71 71 TYR TYR A . n A 1 77 ILE 77 72 72 ILE ILE A . n A 1 78 HIS 78 73 73 HIS HIS A . n A 1 79 ASP 79 74 74 ASP ASP A . n A 1 80 LEU 80 75 75 LEU LEU A . n A 1 81 LEU 81 76 76 LEU LEU A . n A 1 82 LYS 82 77 77 LYS LYS A . n A 1 83 TYR 83 78 78 TYR TYR A . n A 1 84 GLU 84 79 79 GLU GLU A . n A 1 85 PHE 85 80 80 PHE PHE A . n A 1 86 ASP 86 81 81 ASP ASP A . n A 1 87 ILE 87 82 82 ILE ILE A . n A 1 88 GLU 88 83 83 GLU GLU A . n A 1 89 PHE 89 84 84 PHE PHE A . n A 1 90 ASP 90 85 85 ASP ASP A . n A 1 91 ILE 91 86 86 ILE ILE A . n A 1 92 PRO 92 87 87 PRO PRO A . n A 1 93 ILE 93 88 88 ILE ILE A . n A 1 94 THR 94 89 89 THR THR A . n A 1 95 TYR 95 90 90 TYR TYR A . n A 1 96 PRO 96 91 91 PRO PRO A . n A 1 97 THR 97 92 92 THR THR A . n A 1 98 THR 98 93 93 THR THR A . n A 1 99 ALA 99 94 94 ALA ALA A . n A 1 100 PRO 100 95 95 PRO PRO A . n A 1 101 GLU 101 96 96 GLU GLU A . n A 1 102 ILE 102 97 97 ILE ILE A . n A 1 103 ALA 103 98 98 ALA ALA A . n A 1 104 VAL 104 99 99 VAL VAL A . n A 1 105 PRO 105 100 100 PRO PRO A . n A 1 106 GLU 106 101 101 GLU GLU A . n A 1 107 LEU 107 102 102 LEU LEU A . n A 1 108 ASP 108 103 103 ASP ASP A . n A 1 109 GLY 109 104 104 GLY GLY A . n A 1 110 LYS 110 105 105 LYS LYS A . n A 1 111 THR 111 106 106 THR THR A . n A 1 112 ALA 112 107 107 ALA ALA A . n A 1 113 LYS 113 108 108 LYS LYS A . n A 1 114 MSE 114 109 109 MSE MSE A . n A 1 115 TYR 115 110 110 TYR TYR A . n A 1 116 ARG 116 111 111 ARG ARG A . n A 1 117 GLY 117 112 112 GLY GLY A . n A 1 118 GLY 118 113 113 GLY GLY A . n A 1 119 LYS 119 114 114 LYS LYS A . n A 1 120 ILE 120 115 115 ILE ILE A . n A 1 121 CYS 121 116 116 CYS CYS A . n A 1 122 LEU 122 117 117 LEU LEU A . n A 1 123 THR 123 118 118 THR THR A . n A 1 124 ASP 124 119 119 ASP ASP A . n A 1 125 HIS 125 120 120 HIS HIS A . n A 1 126 PHE 126 121 121 PHE PHE A . n A 1 127 LYS 127 122 122 LYS LYS A . n A 1 128 PRO 128 123 123 PRO PRO A . n A 1 129 LEU 129 124 124 LEU LEU A . n A 1 130 TRP 130 125 125 TRP TRP A . n A 1 131 ALA 131 126 126 ALA ALA A . n A 1 132 ARG 132 127 127 ARG ARG A . n A 1 133 ASN 133 128 128 ASN ASN A . n A 1 134 VAL 134 129 129 VAL VAL A . n A 1 135 PRO 135 130 130 PRO PRO A . n A 1 136 LYS 136 131 131 LYS LYS A . n A 1 137 PHE 137 132 132 PHE PHE A . n A 1 138 GLY 138 133 133 GLY GLY A . n A 1 139 LEU 139 134 134 LEU LEU A . n A 1 140 ALA 140 135 135 ALA ALA A . n A 1 141 HIS 141 136 136 HIS HIS A . n A 1 142 LEU 142 137 137 LEU LEU A . n A 1 143 MSE 143 138 138 MSE MSE A . n A 1 144 ALA 144 139 139 ALA ALA A . n A 1 145 LEU 145 140 140 LEU LEU A . n A 1 146 GLY 146 141 141 GLY GLY A . n A 1 147 LEU 147 142 142 LEU LEU A . n A 1 148 GLY 148 143 143 GLY GLY A . n A 1 149 PRO 149 144 144 PRO PRO A . n A 1 150 TRP 150 145 145 TRP TRP A . n A 1 151 LEU 151 146 146 LEU LEU A . n A 1 152 ALA 152 147 147 ALA ALA A . n A 1 153 VAL 153 148 148 VAL VAL A . n A 1 154 GLU 154 149 149 GLU GLU A . n A 1 155 ILE 155 150 150 ILE ILE A . n A 1 156 PRO 156 151 151 PRO PRO A . n A 1 157 ASP 157 152 152 ASP ASP A . n A 1 158 LEU 158 153 153 LEU LEU A . n A 1 159 ILE 159 154 154 ILE ILE A . n A 1 160 GLN 160 155 155 GLN GLN A . n A 1 161 LYS 161 156 156 LYS LYS A . n A 1 162 GLY 162 157 157 GLY GLY A . n A 1 163 VAL 163 158 158 VAL VAL A . n A 1 164 ILE 164 159 159 ILE ILE A . n A 1 165 GLN 165 160 160 GLN GLN A . n A 1 166 HIS 166 161 161 HIS HIS A . n A 1 167 LYS 167 162 162 LYS LYS A . n A 1 168 GLU 168 163 163 GLU GLU A . n A 1 169 LYS 169 164 ? ? ? A . n A 1 170 CYS 170 165 ? ? ? A . n A 1 171 ASN 171 166 ? ? ? A . n A 1 172 GLN 172 167 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HOH 1 168 1 HOH HOH A . B 2 HOH 2 169 2 HOH HOH A . B 2 HOH 3 170 3 HOH HOH A . B 2 HOH 4 171 4 HOH HOH A . B 2 HOH 5 172 5 HOH HOH A . B 2 HOH 6 173 6 HOH HOH A . B 2 HOH 7 174 7 HOH HOH A . B 2 HOH 8 175 8 HOH HOH A . B 2 HOH 9 176 9 HOH HOH A . B 2 HOH 10 177 10 HOH HOH A . B 2 HOH 11 178 11 HOH HOH A . B 2 HOH 12 179 12 HOH HOH A . B 2 HOH 13 180 13 HOH HOH A . B 2 HOH 14 181 14 HOH HOH A . B 2 HOH 15 182 15 HOH HOH A . B 2 HOH 16 183 16 HOH HOH A . B 2 HOH 17 184 17 HOH HOH A . B 2 HOH 18 185 18 HOH HOH A . B 2 HOH 19 186 19 HOH HOH A . B 2 HOH 20 187 20 HOH HOH A . B 2 HOH 21 188 21 HOH HOH A . B 2 HOH 22 189 22 HOH HOH A . B 2 HOH 23 190 23 HOH HOH A . B 2 HOH 24 191 24 HOH HOH A . B 2 HOH 25 192 25 HOH HOH A . B 2 HOH 26 193 26 HOH HOH A . B 2 HOH 27 194 27 HOH HOH A . B 2 HOH 28 195 28 HOH HOH A . B 2 HOH 29 196 29 HOH HOH A . B 2 HOH 30 197 30 HOH HOH A . B 2 HOH 31 198 31 HOH HOH A . B 2 HOH 32 199 32 HOH HOH A . B 2 HOH 33 200 33 HOH HOH A . B 2 HOH 34 201 34 HOH HOH A . B 2 HOH 35 202 35 HOH HOH A . B 2 HOH 36 203 36 HOH HOH A . B 2 HOH 37 204 37 HOH HOH A . B 2 HOH 38 205 38 HOH HOH A . B 2 HOH 39 206 39 HOH HOH A . B 2 HOH 40 207 40 HOH HOH A . B 2 HOH 41 208 41 HOH HOH A . B 2 HOH 42 209 42 HOH HOH A . B 2 HOH 43 210 43 HOH HOH A . B 2 HOH 44 211 44 HOH HOH A . B 2 HOH 45 212 45 HOH HOH A . B 2 HOH 46 213 46 HOH HOH A . B 2 HOH 47 214 47 HOH HOH A . B 2 HOH 48 215 48 HOH HOH A . B 2 HOH 49 216 49 HOH HOH A . B 2 HOH 50 217 50 HOH HOH A . B 2 HOH 51 218 51 HOH HOH A . B 2 HOH 52 219 52 HOH HOH A . B 2 HOH 53 220 53 HOH HOH A . B 2 HOH 54 221 54 HOH HOH A . B 2 HOH 55 222 55 HOH HOH A . B 2 HOH 56 223 56 HOH HOH A . B 2 HOH 57 224 57 HOH HOH A . B 2 HOH 58 225 58 HOH HOH A . B 2 HOH 59 226 59 HOH HOH A . B 2 HOH 60 227 60 HOH HOH A . B 2 HOH 61 228 61 HOH HOH A . B 2 HOH 62 229 62 HOH HOH A . B 2 HOH 63 230 63 HOH HOH A . B 2 HOH 64 231 64 HOH HOH A . B 2 HOH 65 232 65 HOH HOH A . B 2 HOH 66 233 66 HOH HOH A . B 2 HOH 67 234 67 HOH HOH A . B 2 HOH 68 235 68 HOH HOH A . B 2 HOH 69 236 69 HOH HOH A . B 2 HOH 70 237 70 HOH HOH A . B 2 HOH 71 238 71 HOH HOH A . B 2 HOH 72 239 72 HOH HOH A . B 2 HOH 73 240 73 HOH HOH A . B 2 HOH 74 241 74 HOH HOH A . B 2 HOH 75 242 75 HOH HOH A . B 2 HOH 76 243 76 HOH HOH A . B 2 HOH 77 244 77 HOH HOH A . B 2 HOH 78 245 78 HOH HOH A . B 2 HOH 79 246 79 HOH HOH A . B 2 HOH 80 247 80 HOH HOH A . B 2 HOH 81 248 81 HOH HOH A . B 2 HOH 82 249 82 HOH HOH A . B 2 HOH 83 250 83 HOH HOH A . B 2 HOH 84 251 84 HOH HOH A . B 2 HOH 85 252 85 HOH HOH A . B 2 HOH 86 253 86 HOH HOH A . B 2 HOH 87 254 87 HOH HOH A . B 2 HOH 88 255 88 HOH HOH A . B 2 HOH 89 256 89 HOH HOH A . B 2 HOH 90 257 90 HOH HOH A . B 2 HOH 91 258 91 HOH HOH A . B 2 HOH 92 259 92 HOH HOH A . B 2 HOH 93 260 93 HOH HOH A . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 6 A MSE 1 ? MET SELENOMETHIONINE 2 A MSE 114 A MSE 109 ? MET SELENOMETHIONINE 3 A MSE 143 A MSE 138 ? MET SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2007-09-25 2 'Structure model' 1 1 2011-07-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # _pdbx_audit_revision_group.ordinal 1 _pdbx_audit_revision_group.revision_ordinal 2 _pdbx_audit_revision_group.data_content_type 'Structure model' _pdbx_audit_revision_group.group 'Version format compliance' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal REFMAC refinement 5.2.0005 ? 1 DENZO 'data reduction' . ? 2 SCALEPACK 'data scaling' . ? 3 SHARP phasing . ? 4 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 LYS A 17 ? ? -130.58 -43.64 2 1 ARG A 25 ? ? 58.13 -122.99 3 1 LEU A 75 ? ? 70.75 -6.66 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY -4 ? A GLY 1 2 1 Y 1 A PRO -3 ? A PRO 2 3 1 Y 1 A LEU -2 ? A LEU 3 4 1 Y 1 A GLY -1 ? A GLY 4 5 1 Y 1 A SER 0 ? A SER 5 6 1 Y 1 A LYS 164 ? A LYS 169 7 1 Y 1 A CYS 165 ? A CYS 170 8 1 Y 1 A ASN 166 ? A ASN 171 9 1 Y 1 A GLN 167 ? A GLN 172 # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH #