data_2Z82 # _entry.id 2Z82 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.329 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 2Z82 RCSB RCSB027638 WWPDB D_1000027638 # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 2Z7X . unspecified PDB 2Z80 . unspecified PDB 2Z81 . unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2Z82 _pdbx_database_status.recvd_initial_deposition_date 2007-08-30 _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Lee, J.O.' 1 'Jin, M.S.' 2 'Kim, S.E.' 3 'Heo, J.Y.' 4 # _citation.id primary _citation.title 'Crystal Structure of the TLR1-TLR2 Heterodimer Induced by Binding of a Tri-Acylated Lipopeptide' _citation.journal_abbrev 'Cell(Cambridge,Mass.)' _citation.journal_volume 130 _citation.page_first 1071 _citation.page_last 1082 _citation.year 2007 _citation.journal_id_ASTM CELLB5 _citation.country US _citation.journal_id_ISSN 0092-8674 _citation.journal_id_CSD 0998 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 17889651 _citation.pdbx_database_id_DOI 10.1016/j.cell.2007.09.008 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Jin, M.S.' 1 ? primary 'Kim, S.E.' 2 ? primary 'Heo, J.Y.' 3 ? primary 'Lee, M.E.' 4 ? primary 'Kim, H.M.' 5 ? primary 'Paik, S.G.' 6 ? primary 'Lee, H.' 7 ? primary 'Lee, J.O.' 8 ? # _cell.entry_id 2Z82 _cell.length_a 84.650 _cell.length_b 81.334 _cell.length_c 90.904 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 2Z82 _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Toll-like receptor 2, Variable lymphocyte receptor B' 61972.961 1 ? ? 'TLR2, UNP residues 27-506(Mouse), VLRB.61, UNP residues 133-199(Inshore hagfish)' ? 2 branched man '2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose' 424.401 1 ? ? ? ? 3 branched man 'alpha-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose' 586.542 1 ? ? ? ? 4 non-polymer man 2-acetamido-2-deoxy-beta-D-glucopyranose 221.208 1 ? ? ? ? 5 non-polymer syn '(2R)-3-{[(2R)-2-AMINO-3-HYDROXYPROPYL]THIO}PROPANE-1,2-DIYL DIHEXADECANOATE' 658.071 1 ? ? ? ? 6 water nat water 18.015 86 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'CD282 antigen' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;SLSCDASGVCDGRSRSFTSIPSGLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLD LSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSL RNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESF NELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENS KVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH PMPDSCQWPEKMRFLNLSSTGIRVVKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRNKLKTLPDASLFPVLLVMKI SRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQKEQGSAKCSGSGKPVRSIICP ; _entity_poly.pdbx_seq_one_letter_code_can ;SLSCDASGVCDGRSRSFTSIPSGLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLD LSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSL RNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESF NELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENS KVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH PMPDSCQWPEKMRFLNLSSTGIRVVKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRNKLKTLPDASLFPVLLVMKI SRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQKEQGSAKCSGSGKPVRSIICP ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 SER n 1 2 LEU n 1 3 SER n 1 4 CYS n 1 5 ASP n 1 6 ALA n 1 7 SER n 1 8 GLY n 1 9 VAL n 1 10 CYS n 1 11 ASP n 1 12 GLY n 1 13 ARG n 1 14 SER n 1 15 ARG n 1 16 SER n 1 17 PHE n 1 18 THR n 1 19 SER n 1 20 ILE n 1 21 PRO n 1 22 SER n 1 23 GLY n 1 24 LEU n 1 25 THR n 1 26 ALA n 1 27 ALA n 1 28 MET n 1 29 LYS n 1 30 SER n 1 31 LEU n 1 32 ASP n 1 33 LEU n 1 34 SER n 1 35 PHE n 1 36 ASN n 1 37 LYS n 1 38 ILE n 1 39 THR n 1 40 TYR n 1 41 ILE n 1 42 GLY n 1 43 HIS n 1 44 GLY n 1 45 ASP n 1 46 LEU n 1 47 ARG n 1 48 ALA n 1 49 CYS n 1 50 ALA n 1 51 ASN n 1 52 LEU n 1 53 GLN n 1 54 VAL n 1 55 LEU n 1 56 ILE n 1 57 LEU n 1 58 LYS n 1 59 SER n 1 60 SER n 1 61 ARG n 1 62 ILE n 1 63 ASN n 1 64 THR n 1 65 ILE n 1 66 GLU n 1 67 GLY n 1 68 ASP n 1 69 ALA n 1 70 PHE n 1 71 TYR n 1 72 SER n 1 73 LEU n 1 74 GLY n 1 75 SER n 1 76 LEU n 1 77 GLU n 1 78 HIS n 1 79 LEU n 1 80 ASP n 1 81 LEU n 1 82 SER n 1 83 ASP n 1 84 ASN n 1 85 HIS n 1 86 LEU n 1 87 SER n 1 88 SER n 1 89 LEU n 1 90 SER n 1 91 SER n 1 92 SER n 1 93 TRP n 1 94 PHE n 1 95 GLY n 1 96 PRO n 1 97 LEU n 1 98 SER n 1 99 SER n 1 100 LEU n 1 101 LYS n 1 102 TYR n 1 103 LEU n 1 104 ASN n 1 105 LEU n 1 106 MET n 1 107 GLY n 1 108 ASN n 1 109 PRO n 1 110 TYR n 1 111 GLN n 1 112 THR n 1 113 LEU n 1 114 GLY n 1 115 VAL n 1 116 THR n 1 117 SER n 1 118 LEU n 1 119 PHE n 1 120 PRO n 1 121 ASN n 1 122 LEU n 1 123 THR n 1 124 ASN n 1 125 LEU n 1 126 GLN n 1 127 THR n 1 128 LEU n 1 129 ARG n 1 130 ILE n 1 131 GLY n 1 132 ASN n 1 133 VAL n 1 134 GLU n 1 135 THR n 1 136 PHE n 1 137 SER n 1 138 GLU n 1 139 ILE n 1 140 ARG n 1 141 ARG n 1 142 ILE n 1 143 ASP n 1 144 PHE n 1 145 ALA n 1 146 GLY n 1 147 LEU n 1 148 THR n 1 149 SER n 1 150 LEU n 1 151 ASN n 1 152 GLU n 1 153 LEU n 1 154 GLU n 1 155 ILE n 1 156 LYS n 1 157 ALA n 1 158 LEU n 1 159 SER n 1 160 LEU n 1 161 ARG n 1 162 ASN n 1 163 TYR n 1 164 GLN n 1 165 SER n 1 166 GLN n 1 167 SER n 1 168 LEU n 1 169 LYS n 1 170 SER n 1 171 ILE n 1 172 ARG n 1 173 ASP n 1 174 ILE n 1 175 HIS n 1 176 HIS n 1 177 LEU n 1 178 THR n 1 179 LEU n 1 180 HIS n 1 181 LEU n 1 182 SER n 1 183 GLU n 1 184 SER n 1 185 ALA n 1 186 PHE n 1 187 LEU n 1 188 LEU n 1 189 GLU n 1 190 ILE n 1 191 PHE n 1 192 ALA n 1 193 ASP n 1 194 ILE n 1 195 LEU n 1 196 SER n 1 197 SER n 1 198 VAL n 1 199 ARG n 1 200 TYR n 1 201 LEU n 1 202 GLU n 1 203 LEU n 1 204 ARG n 1 205 ASP n 1 206 THR n 1 207 ASN n 1 208 LEU n 1 209 ALA n 1 210 ARG n 1 211 PHE n 1 212 GLN n 1 213 PHE n 1 214 SER n 1 215 PRO n 1 216 LEU n 1 217 PRO n 1 218 VAL n 1 219 ASP n 1 220 GLU n 1 221 VAL n 1 222 SER n 1 223 SER n 1 224 PRO n 1 225 MET n 1 226 LYS n 1 227 LYS n 1 228 LEU n 1 229 ALA n 1 230 PHE n 1 231 ARG n 1 232 GLY n 1 233 SER n 1 234 VAL n 1 235 LEU n 1 236 THR n 1 237 ASP n 1 238 GLU n 1 239 SER n 1 240 PHE n 1 241 ASN n 1 242 GLU n 1 243 LEU n 1 244 LEU n 1 245 LYS n 1 246 LEU n 1 247 LEU n 1 248 ARG n 1 249 TYR n 1 250 ILE n 1 251 LEU n 1 252 GLU n 1 253 LEU n 1 254 SER n 1 255 GLU n 1 256 VAL n 1 257 GLU n 1 258 PHE n 1 259 ASP n 1 260 ASP n 1 261 CYS n 1 262 THR n 1 263 LEU n 1 264 ASN n 1 265 GLY n 1 266 LEU n 1 267 GLY n 1 268 ASP n 1 269 PHE n 1 270 ASN n 1 271 PRO n 1 272 SER n 1 273 GLU n 1 274 SER n 1 275 ASP n 1 276 VAL n 1 277 VAL n 1 278 SER n 1 279 GLU n 1 280 LEU n 1 281 GLY n 1 282 LYS n 1 283 VAL n 1 284 GLU n 1 285 THR n 1 286 VAL n 1 287 THR n 1 288 ILE n 1 289 ARG n 1 290 ARG n 1 291 LEU n 1 292 HIS n 1 293 ILE n 1 294 PRO n 1 295 GLN n 1 296 PHE n 1 297 TYR n 1 298 LEU n 1 299 PHE n 1 300 TYR n 1 301 ASP n 1 302 LEU n 1 303 SER n 1 304 THR n 1 305 VAL n 1 306 TYR n 1 307 SER n 1 308 LEU n 1 309 LEU n 1 310 GLU n 1 311 LYS n 1 312 VAL n 1 313 LYS n 1 314 ARG n 1 315 ILE n 1 316 THR n 1 317 VAL n 1 318 GLU n 1 319 ASN n 1 320 SER n 1 321 LYS n 1 322 VAL n 1 323 PHE n 1 324 LEU n 1 325 VAL n 1 326 PRO n 1 327 CYS n 1 328 SER n 1 329 PHE n 1 330 SER n 1 331 GLN n 1 332 HIS n 1 333 LEU n 1 334 LYS n 1 335 SER n 1 336 LEU n 1 337 GLU n 1 338 PHE n 1 339 LEU n 1 340 ASP n 1 341 LEU n 1 342 SER n 1 343 GLU n 1 344 ASN n 1 345 LEU n 1 346 MET n 1 347 VAL n 1 348 GLU n 1 349 GLU n 1 350 TYR n 1 351 LEU n 1 352 LYS n 1 353 ASN n 1 354 SER n 1 355 ALA n 1 356 CYS n 1 357 LYS n 1 358 GLY n 1 359 ALA n 1 360 TRP n 1 361 PRO n 1 362 SER n 1 363 LEU n 1 364 GLN n 1 365 THR n 1 366 LEU n 1 367 VAL n 1 368 LEU n 1 369 SER n 1 370 GLN n 1 371 ASN n 1 372 HIS n 1 373 LEU n 1 374 ARG n 1 375 SER n 1 376 MET n 1 377 GLN n 1 378 LYS n 1 379 THR n 1 380 GLY n 1 381 GLU n 1 382 ILE n 1 383 LEU n 1 384 LEU n 1 385 THR n 1 386 LEU n 1 387 LYS n 1 388 ASN n 1 389 LEU n 1 390 THR n 1 391 SER n 1 392 LEU n 1 393 ASP n 1 394 ILE n 1 395 SER n 1 396 ARG n 1 397 ASN n 1 398 THR n 1 399 PHE n 1 400 HIS n 1 401 PRO n 1 402 MET n 1 403 PRO n 1 404 ASP n 1 405 SER n 1 406 CYS n 1 407 GLN n 1 408 TRP n 1 409 PRO n 1 410 GLU n 1 411 LYS n 1 412 MET n 1 413 ARG n 1 414 PHE n 1 415 LEU n 1 416 ASN n 1 417 LEU n 1 418 SER n 1 419 SER n 1 420 THR n 1 421 GLY n 1 422 ILE n 1 423 ARG n 1 424 VAL n 1 425 VAL n 1 426 LYS n 1 427 THR n 1 428 CYS n 1 429 ILE n 1 430 PRO n 1 431 GLN n 1 432 THR n 1 433 LEU n 1 434 GLU n 1 435 VAL n 1 436 LEU n 1 437 ASP n 1 438 VAL n 1 439 SER n 1 440 ASN n 1 441 ASN n 1 442 ASN n 1 443 LEU n 1 444 ASP n 1 445 SER n 1 446 PHE n 1 447 SER n 1 448 LEU n 1 449 PHE n 1 450 LEU n 1 451 PRO n 1 452 ARG n 1 453 LEU n 1 454 GLN n 1 455 GLU n 1 456 LEU n 1 457 TYR n 1 458 ILE n 1 459 SER n 1 460 ARG n 1 461 ASN n 1 462 LYS n 1 463 LEU n 1 464 LYS n 1 465 THR n 1 466 LEU n 1 467 PRO n 1 468 ASP n 1 469 ALA n 1 470 SER n 1 471 LEU n 1 472 PHE n 1 473 PRO n 1 474 VAL n 1 475 LEU n 1 476 LEU n 1 477 VAL n 1 478 MET n 1 479 LYS n 1 480 ILE n 1 481 SER n 1 482 ARG n 1 483 ASN n 1 484 GLN n 1 485 LEU n 1 486 LYS n 1 487 SER n 1 488 VAL n 1 489 PRO n 1 490 ASP n 1 491 GLY n 1 492 ILE n 1 493 PHE n 1 494 ASP n 1 495 ARG n 1 496 LEU n 1 497 THR n 1 498 SER n 1 499 LEU n 1 500 GLN n 1 501 LYS n 1 502 ILE n 1 503 TRP n 1 504 LEU n 1 505 HIS n 1 506 THR n 1 507 ASN n 1 508 PRO n 1 509 TRP n 1 510 ASP n 1 511 CYS n 1 512 SER n 1 513 CYS n 1 514 PRO n 1 515 ARG n 1 516 ILE n 1 517 ASP n 1 518 TYR n 1 519 LEU n 1 520 SER n 1 521 ARG n 1 522 TRP n 1 523 LEU n 1 524 ASN n 1 525 LYS n 1 526 ASN n 1 527 SER n 1 528 GLN n 1 529 LYS n 1 530 GLU n 1 531 GLN n 1 532 GLY n 1 533 SER n 1 534 ALA n 1 535 LYS n 1 536 CYS n 1 537 SER n 1 538 GLY n 1 539 SER n 1 540 GLY n 1 541 LYS n 1 542 PRO n 1 543 VAL n 1 544 ARG n 1 545 SER n 1 546 ILE n 1 547 ILE n 1 548 CYS n 1 549 PRO n # loop_ _entity_src_gen.entity_id _entity_src_gen.pdbx_src_id _entity_src_gen.pdbx_alt_source_flag _entity_src_gen.pdbx_seq_type _entity_src_gen.pdbx_beg_seq_num _entity_src_gen.pdbx_end_seq_num _entity_src_gen.gene_src_common_name _entity_src_gen.gene_src_genus _entity_src_gen.pdbx_gene_src_gene _entity_src_gen.gene_src_species _entity_src_gen.gene_src_strain _entity_src_gen.gene_src_tissue _entity_src_gen.gene_src_tissue_fraction _entity_src_gen.gene_src_details _entity_src_gen.pdbx_gene_src_fragment _entity_src_gen.pdbx_gene_src_scientific_name _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id _entity_src_gen.pdbx_gene_src_variant _entity_src_gen.pdbx_gene_src_cell_line _entity_src_gen.pdbx_gene_src_atcc _entity_src_gen.pdbx_gene_src_organ _entity_src_gen.pdbx_gene_src_organelle _entity_src_gen.pdbx_gene_src_cell _entity_src_gen.pdbx_gene_src_cellular_location _entity_src_gen.host_org_common_name _entity_src_gen.pdbx_host_org_scientific_name _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id _entity_src_gen.host_org_genus _entity_src_gen.pdbx_host_org_gene _entity_src_gen.pdbx_host_org_organ _entity_src_gen.host_org_species _entity_src_gen.pdbx_host_org_tissue _entity_src_gen.pdbx_host_org_tissue_fraction _entity_src_gen.pdbx_host_org_strain _entity_src_gen.pdbx_host_org_variant _entity_src_gen.pdbx_host_org_cell_line _entity_src_gen.pdbx_host_org_atcc _entity_src_gen.pdbx_host_org_culture_collection _entity_src_gen.pdbx_host_org_cell _entity_src_gen.pdbx_host_org_organelle _entity_src_gen.pdbx_host_org_cellular_location _entity_src_gen.pdbx_host_org_vector_type _entity_src_gen.pdbx_host_org_vector _entity_src_gen.host_org_details _entity_src_gen.expression_system_id _entity_src_gen.plasmid_name _entity_src_gen.plasmid_details _entity_src_gen.pdbx_description 1 1 sample ? 1 480 'house mouse, inshore hagfish' 'Mus, Eptatretus' 'Tlr2, VLRB' , , ? ? ? ? 'Mus musculus' 10090 ? ? ? ? ? ? ? 'cabbage looper' 'Trichoplusia ni' 7111 Trichoplusia ? ? ? ? ? Hi-5 ? ? ? ? ? ? ? baculovirus ? ? ? pVL1393 ? ? 1 2 sample ? 483 549 'house mouse, inshore hagfish' 'Mus, Eptatretus' 'Tlr2, VLRB' , , ? ? ? ? 'Eptatretus burgeri' 7764 ? ? ? ? ? ? ? 'cabbage looper' 'Trichoplusia ni' 7111 Trichoplusia ? ? ? ? ? Hi-5 ? ? ? ? ? ? ? baculovirus ? ? ? pVL1393 ? ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP TLR2_MOUSE Q9QUN7 1 ;SLSCDASGVCDGRSRSFTSIPSGLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLD LSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSL RNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESF NELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENS KVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH PMPDSCQWPEKMRFLNLSSTGIRVVKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRNKLKTLPDASLFPVLLVMKI ; 27 ? 2 UNP Q4G1L2_EPTBU Q4G1L2 1 NQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQKEQGSAKCSGSGKPVRSIICP 133 ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2Z82 A 1 ? 480 ? Q9QUN7 27 ? 506 ? 27 506 2 2 2Z82 A 483 ? 549 ? Q4G1L2 133 ? 199 ? 509 575 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2Z82 SER A 481 ? UNP Q9QUN7 ? ? linker 507 1 1 2Z82 ARG A 482 ? UNP Q9QUN7 ? ? linker 508 2 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MAN 'D-saccharide, alpha linking' . alpha-D-mannopyranose ? 'C6 H12 O6' 180.156 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 NAG 'D-saccharide, beta linking' . 2-acetamido-2-deoxy-beta-D-glucopyranose ? 'C8 H15 N O6' 221.208 PDJ non-polymer . '(2R)-3-{[(2R)-2-AMINO-3-HYDROXYPROPYL]THIO}PROPANE-1,2-DIYL DIHEXADECANOATE' ? 'C38 H75 N O5 S' 658.071 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 2Z82 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.52 _exptl_crystal.density_percent_sol 51.28 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 296 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 8.5 _exptl_crystal_grow.pdbx_details '0.2M ammonium sulfate, 0.1M Tris-HCl pH8.5 and 34% PEG1000, VAPOR DIFFUSION, HANGING DROP, temperature 296K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315' _diffrn_detector.pdbx_collection_date 2007-04-10 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'SAGITALLY FOCUSED Si(111)' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.0 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'SPRING-8 BEAMLINE BL41XU' _diffrn_source.pdbx_synchrotron_site SPring-8 _diffrn_source.pdbx_synchrotron_beamline BL41XU _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.0 # _reflns.entry_id 2Z82 _reflns.observed_criterion_sigma_F 0 _reflns.observed_criterion_sigma_I 0 _reflns.d_resolution_high 2.6 _reflns.d_resolution_low 50.0 _reflns.number_all 19913 _reflns.number_obs 18898 _reflns.percent_possible_obs 94.9 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value 0.096 _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate 19.8 _reflns.pdbx_redundancy 5.9 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 2.60 _reflns_shell.d_res_low 2.76 _reflns_shell.percent_possible_all 80.3 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value 0.363 _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 2Z82 _refine.ls_d_res_high 2.6 _refine.ls_d_res_low 39.68 _refine.pdbx_ls_sigma_F 0 _refine.pdbx_ls_sigma_I 0 _refine.ls_number_reflns_all 19913 _refine.ls_number_reflns_obs 18898 _refine.ls_number_reflns_R_free 921 _refine.ls_percent_reflns_obs 94.9 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.215 _refine.ls_R_factor_R_work 0.215 _refine.ls_R_factor_R_free 0.277 _refine.ls_redundancy_reflns_obs ? _refine.pdbx_data_cutoff_high_absF 195675.32 _refine.pdbx_data_cutoff_low_absF 0.000000 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_R_free 4.9 _refine.ls_R_factor_R_free_error 0.009 _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details random _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_stereochemistry_target_values 'Engh & Huber' _refine.solvent_model_details 'FLAT MODEL' _refine.solvent_model_param_bsol 13.538 _refine.solvent_model_param_ksol 0.3 _refine.occupancy_max ? _refine.occupancy_min ? _refine.pdbx_isotropic_thermal_model RESTRAINED _refine.B_iso_mean 36.5 _refine.aniso_B[1][1] -5.88 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][2] -10.23 _refine.aniso_B[2][3] 0.00 _refine.aniso_B[3][3] 16.11 _refine.details ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_overall_ESU_R ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 2Z82 _refine_analyze.Luzzati_coordinate_error_obs 0.32 _refine_analyze.Luzzati_sigma_a_obs 0.42 _refine_analyze.Luzzati_d_res_low_obs 5.00 _refine_analyze.Luzzati_coordinate_error_free 0.42 _refine_analyze.Luzzati_sigma_a_free 0.59 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 4353 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 126 _refine_hist.number_atoms_solvent 86 _refine_hist.number_atoms_total 4565 _refine_hist.d_res_high 2.6 _refine_hist.d_res_low 39.68 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d 0.007 ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg 1.5 ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d 25.9 ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d 1.02 ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 6 _refine_ls_shell.d_res_high 2.60 _refine_ls_shell.d_res_low 2.76 _refine_ls_shell.number_reflns_R_work ? _refine_ls_shell.R_factor_R_work 0.304 _refine_ls_shell.percent_reflns_obs 80.3 _refine_ls_shell.R_factor_R_free 0.363 _refine_ls_shell.R_factor_R_free_error 0.035 _refine_ls_shell.percent_reflns_R_free 4.2 _refine_ls_shell.number_reflns_R_free 109 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs 2509 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 2Z82 _struct.title 'Crystal structure of the TLR1-TLR2 heterodimer induced by binding of a tri-acylated lipopeptide' _struct.pdbx_descriptor 'Toll-like receptor 2, Variable lymphocyte receptor B' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2Z82 _struct_keywords.pdbx_keywords 'IMMUNE SYSTEM' _struct_keywords.text ;TLR2, Pam2CSK4, lipopeptide, innate immunity, Cytoplasmic vesicle, Glycoprotein, Immune response, Inflammatory response, Leucine-rich repeat, Membrane, Receptor, Transmembrane, IMMUNE SYSTEM ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 5 ? F N N 6 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 SER A 90 ? GLY A 95 ? SER A 116 GLY A 121 1 ? 6 HELX_P HELX_P2 2 PHE A 186 ? LEU A 195 ? PHE A 212 LEU A 221 1 ? 10 HELX_P HELX_P3 3 ASP A 237 ? LEU A 246 ? ASP A 263 LEU A 272 1 ? 10 HELX_P HELX_P4 4 LEU A 247 ? ILE A 250 ? LEU A 273 ILE A 276 5 ? 4 HELX_P HELX_P5 5 GLN A 295 ? PHE A 299 ? GLN A 321 PHE A 325 5 ? 5 HELX_P HELX_P6 6 PRO A 326 ? LEU A 333 ? PRO A 352 LEU A 359 1 ? 8 HELX_P HELX_P7 7 VAL A 347 ? ALA A 355 ? VAL A 373 ALA A 381 1 ? 9 HELX_P HELX_P8 8 SER A 375 ? LEU A 383 ? SER A 401 LEU A 409 1 ? 9 HELX_P HELX_P9 9 LEU A 384 ? LEU A 386 ? LEU A 410 LEU A 412 5 ? 3 HELX_P HELX_P10 10 ASP A 468 ? PHE A 472 ? ASP A 494 PHE A 498 5 ? 5 HELX_P HELX_P11 11 ILE A 492 ? LEU A 496 ? ILE A 518 LEU A 522 5 ? 5 HELX_P HELX_P12 12 ILE A 516 ? ASN A 526 ? ILE A 542 ASN A 552 1 ? 11 HELX_P HELX_P13 13 PRO A 542 ? ILE A 546 ? PRO A 568 ILE A 572 5 ? 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 4 SG ? ? ? 1_555 A CYS 10 SG ? ? A CYS 30 A CYS 36 1_555 ? ? ? ? ? ? ? 2.037 ? ? disulf2 disulf ? ? A CYS 327 SG ? ? ? 1_555 A CYS 356 SG ? ? A CYS 353 A CYS 382 1_555 ? ? ? ? ? ? ? 2.035 ? ? disulf3 disulf ? ? A CYS 406 SG ? ? ? 1_555 A CYS 428 SG ? ? A CYS 432 A CYS 454 1_555 ? ? ? ? ? ? ? 2.041 ? ? disulf4 disulf ? ? A CYS 511 SG ? ? ? 1_555 A CYS 536 SG ? ? A CYS 537 A CYS 562 1_555 ? ? ? ? ? ? ? 2.031 ? ? disulf5 disulf ? ? A CYS 513 SG ? ? ? 1_555 A CYS 548 SG ? ? A CYS 539 A CYS 574 1_555 ? ? ? ? ? ? ? 2.034 ? ? covale1 covale one ? A ASN 121 ND2 ? ? ? 1_555 D NAG . C1 ? ? A ASN 147 A NAG 821 1_555 ? ? ? ? ? ? ? 1.455 ? N-Glycosylation covale2 covale one ? A ASN 388 ND2 ? ? ? 1_555 B NAG . C1 ? ? A ASN 414 B NAG 1 1_555 ? ? ? ? ? ? ? 1.450 ? N-Glycosylation covale3 covale one ? A ASN 416 ND2 ? ? ? 1_555 C NAG . C1 ? ? A ASN 442 C NAG 1 1_555 ? ? ? ? ? ? ? 1.447 ? N-Glycosylation covale4 covale both ? B NAG . O4 ? ? ? 1_555 B NAG . C1 ? ? B NAG 1 B NAG 2 1_555 ? ? ? ? ? ? ? 1.398 ? ? covale5 covale both ? C NAG . O4 ? ? ? 1_555 C NAG . C1 ? ? C NAG 1 C NAG 2 1_555 ? ? ? ? ? ? ? 1.395 ? ? covale6 covale both ? C NAG . O4 ? ? ? 1_555 C MAN . C1 ? ? C NAG 2 C MAN 3 1_555 ? ? ? ? ? ? ? 1.398 ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? covale ? ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 23 ? B ? 2 ? C ? 2 ? D ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? parallel A 3 4 ? parallel A 4 5 ? parallel A 5 6 ? parallel A 6 7 ? parallel A 7 8 ? parallel A 8 9 ? parallel A 9 10 ? parallel A 10 11 ? parallel A 11 12 ? parallel A 12 13 ? parallel A 13 14 ? parallel A 14 15 ? parallel A 15 16 ? parallel A 16 17 ? parallel A 17 18 ? parallel A 18 19 ? parallel A 19 20 ? parallel A 20 21 ? parallel A 21 22 ? parallel A 22 23 ? parallel B 1 2 ? parallel C 1 2 ? parallel D 1 2 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 SER A 3 ? CYS A 4 ? SER A 29 CYS A 30 A 2 VAL A 9 ? ASP A 11 ? VAL A 35 ASP A 37 A 3 SER A 30 ? ASP A 32 ? SER A 56 ASP A 58 A 4 VAL A 54 ? ILE A 56 ? VAL A 80 ILE A 82 A 5 HIS A 78 ? ASP A 80 ? HIS A 104 ASP A 106 A 6 TYR A 102 ? ASN A 104 ? TYR A 128 ASN A 130 A 7 THR A 127 ? ASN A 132 ? THR A 153 ASN A 158 A 8 SER A 149 ? ALA A 157 ? SER A 175 ALA A 183 A 9 ASP A 173 ? LEU A 181 ? ASP A 199 LEU A 207 A 10 TYR A 200 ? ARG A 204 ? TYR A 226 ARG A 230 A 11 LYS A 227 ? ARG A 231 ? LYS A 253 ARG A 257 A 12 GLU A 255 ? ASP A 259 ? GLU A 281 ASP A 285 A 13 THR A 285 ? ARG A 289 ? THR A 311 ARG A 315 A 14 ARG A 314 ? GLU A 318 ? ARG A 340 GLU A 344 A 15 PHE A 338 ? ASP A 340 ? PHE A 364 ASP A 366 A 16 THR A 365 ? VAL A 367 ? THR A 391 VAL A 393 A 17 SER A 391 ? ASP A 393 ? SER A 417 ASP A 419 A 18 PHE A 414 ? ASN A 416 ? PHE A 440 ASN A 442 A 19 VAL A 435 ? ASP A 437 ? VAL A 461 ASP A 463 A 20 GLU A 455 ? TYR A 457 ? GLU A 481 TYR A 483 A 21 VAL A 477 ? LYS A 479 ? VAL A 503 LYS A 505 A 22 LYS A 501 ? TRP A 503 ? LYS A 527 TRP A 529 A 23 GLU A 530 ? GLN A 531 ? GLU A 556 GLN A 557 B 1 TYR A 40 ? ILE A 41 ? TYR A 66 ILE A 67 B 2 THR A 64 ? ILE A 65 ? THR A 90 ILE A 91 C 1 GLU A 138 ? ILE A 139 ? GLU A 164 ILE A 165 C 2 ASN A 162 ? TYR A 163 ? ASN A 188 TYR A 189 D 1 VAL A 234 ? THR A 236 ? VAL A 260 THR A 262 D 2 THR A 262 ? ASN A 264 ? THR A 288 ASN A 290 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N SER A 3 ? N SER A 29 O ASP A 11 ? O ASP A 37 A 2 3 N CYS A 10 ? N CYS A 36 O SER A 30 ? O SER A 56 A 3 4 N LEU A 31 ? N LEU A 57 O VAL A 54 ? O VAL A 80 A 4 5 N LEU A 55 ? N LEU A 81 O HIS A 78 ? O HIS A 104 A 5 6 N LEU A 79 ? N LEU A 105 O TYR A 102 ? O TYR A 128 A 6 7 N LEU A 103 ? N LEU A 129 O THR A 127 ? O THR A 153 A 7 8 N ILE A 130 ? N ILE A 156 O LYS A 156 ? O LYS A 182 A 8 9 N ILE A 155 ? N ILE A 181 O THR A 178 ? O THR A 204 A 9 10 N LEU A 177 ? N LEU A 203 O GLU A 202 ? O GLU A 228 A 10 11 N LEU A 203 ? N LEU A 229 O ALA A 229 ? O ALA A 255 A 11 12 N PHE A 230 ? N PHE A 256 O ASP A 259 ? O ASP A 285 A 12 13 N PHE A 258 ? N PHE A 284 O ARG A 289 ? O ARG A 315 A 13 14 N ILE A 288 ? N ILE A 314 O THR A 316 ? O THR A 342 A 14 15 N ILE A 315 ? N ILE A 341 O ASP A 340 ? O ASP A 366 A 15 16 N LEU A 339 ? N LEU A 365 O VAL A 367 ? O VAL A 393 A 16 17 N LEU A 366 ? N LEU A 392 O ASP A 393 ? O ASP A 419 A 17 18 N LEU A 392 ? N LEU A 418 O ASN A 416 ? O ASN A 442 A 18 19 N LEU A 415 ? N LEU A 441 O VAL A 435 ? O VAL A 461 A 19 20 N LEU A 436 ? N LEU A 462 O TYR A 457 ? O TYR A 483 A 20 21 N LEU A 456 ? N LEU A 482 O VAL A 477 ? O VAL A 503 A 21 22 N MET A 478 ? N MET A 504 O TRP A 503 ? O TRP A 529 A 22 23 N ILE A 502 ? N ILE A 528 O GLN A 531 ? O GLN A 557 B 1 2 N ILE A 41 ? N ILE A 67 O THR A 64 ? O THR A 90 C 1 2 N ILE A 139 ? N ILE A 165 O ASN A 162 ? O ASN A 188 D 1 2 N LEU A 235 ? N LEU A 261 O THR A 262 ? O THR A 288 # _database_PDB_matrix.entry_id 2Z82 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2Z82 _atom_sites.fract_transf_matrix[1][1] 0.011813 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.012295 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.011001 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _database_PDB_caveat.text 'NAG A 821 HAS WRONG CHIRALITY AT ATOM C1' # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 SER 1 27 27 SER SER A . n A 1 2 LEU 2 28 28 LEU LEU A . n A 1 3 SER 3 29 29 SER SER A . n A 1 4 CYS 4 30 30 CYS CYS A . n A 1 5 ASP 5 31 31 ASP ASP A . n A 1 6 ALA 6 32 32 ALA ALA A . n A 1 7 SER 7 33 33 SER SER A . n A 1 8 GLY 8 34 34 GLY GLY A . n A 1 9 VAL 9 35 35 VAL VAL A . n A 1 10 CYS 10 36 36 CYS CYS A . n A 1 11 ASP 11 37 37 ASP ASP A . n A 1 12 GLY 12 38 38 GLY GLY A . n A 1 13 ARG 13 39 39 ARG ARG A . n A 1 14 SER 14 40 40 SER SER A . n A 1 15 ARG 15 41 41 ARG ARG A . n A 1 16 SER 16 42 42 SER SER A . n A 1 17 PHE 17 43 43 PHE PHE A . n A 1 18 THR 18 44 44 THR THR A . n A 1 19 SER 19 45 45 SER SER A . n A 1 20 ILE 20 46 46 ILE ILE A . n A 1 21 PRO 21 47 47 PRO PRO A . n A 1 22 SER 22 48 48 SER SER A . n A 1 23 GLY 23 49 49 GLY GLY A . n A 1 24 LEU 24 50 50 LEU LEU A . n A 1 25 THR 25 51 51 THR THR A . n A 1 26 ALA 26 52 52 ALA ALA A . n A 1 27 ALA 27 53 53 ALA ALA A . n A 1 28 MET 28 54 54 MET MET A . n A 1 29 LYS 29 55 55 LYS LYS A . n A 1 30 SER 30 56 56 SER SER A . n A 1 31 LEU 31 57 57 LEU LEU A . n A 1 32 ASP 32 58 58 ASP ASP A . n A 1 33 LEU 33 59 59 LEU LEU A . n A 1 34 SER 34 60 60 SER SER A . n A 1 35 PHE 35 61 61 PHE PHE A . n A 1 36 ASN 36 62 62 ASN ASN A . n A 1 37 LYS 37 63 63 LYS LYS A . n A 1 38 ILE 38 64 64 ILE ILE A . n A 1 39 THR 39 65 65 THR THR A . n A 1 40 TYR 40 66 66 TYR TYR A . n A 1 41 ILE 41 67 67 ILE ILE A . n A 1 42 GLY 42 68 68 GLY GLY A . n A 1 43 HIS 43 69 69 HIS HIS A . n A 1 44 GLY 44 70 70 GLY GLY A . n A 1 45 ASP 45 71 71 ASP ASP A . n A 1 46 LEU 46 72 72 LEU LEU A . n A 1 47 ARG 47 73 73 ARG ARG A . n A 1 48 ALA 48 74 74 ALA ALA A . n A 1 49 CYS 49 75 75 CYS CYS A . n A 1 50 ALA 50 76 76 ALA ALA A . n A 1 51 ASN 51 77 77 ASN ASN A . n A 1 52 LEU 52 78 78 LEU LEU A . n A 1 53 GLN 53 79 79 GLN GLN A . n A 1 54 VAL 54 80 80 VAL VAL A . n A 1 55 LEU 55 81 81 LEU LEU A . n A 1 56 ILE 56 82 82 ILE ILE A . n A 1 57 LEU 57 83 83 LEU LEU A . n A 1 58 LYS 58 84 84 LYS LYS A . n A 1 59 SER 59 85 85 SER SER A . n A 1 60 SER 60 86 86 SER SER A . n A 1 61 ARG 61 87 87 ARG ARG A . n A 1 62 ILE 62 88 88 ILE ILE A . n A 1 63 ASN 63 89 89 ASN ASN A . n A 1 64 THR 64 90 90 THR THR A . n A 1 65 ILE 65 91 91 ILE ILE A . n A 1 66 GLU 66 92 92 GLU GLU A . n A 1 67 GLY 67 93 93 GLY GLY A . n A 1 68 ASP 68 94 94 ASP ASP A . n A 1 69 ALA 69 95 95 ALA ALA A . n A 1 70 PHE 70 96 96 PHE PHE A . n A 1 71 TYR 71 97 97 TYR TYR A . n A 1 72 SER 72 98 98 SER SER A . n A 1 73 LEU 73 99 99 LEU LEU A . n A 1 74 GLY 74 100 100 GLY GLY A . n A 1 75 SER 75 101 101 SER SER A . n A 1 76 LEU 76 102 102 LEU LEU A . n A 1 77 GLU 77 103 103 GLU GLU A . n A 1 78 HIS 78 104 104 HIS HIS A . n A 1 79 LEU 79 105 105 LEU LEU A . n A 1 80 ASP 80 106 106 ASP ASP A . n A 1 81 LEU 81 107 107 LEU LEU A . n A 1 82 SER 82 108 108 SER SER A . n A 1 83 ASP 83 109 109 ASP ASP A . n A 1 84 ASN 84 110 110 ASN ASN A . n A 1 85 HIS 85 111 111 HIS HIS A . n A 1 86 LEU 86 112 112 LEU LEU A . n A 1 87 SER 87 113 113 SER SER A . n A 1 88 SER 88 114 114 SER SER A . n A 1 89 LEU 89 115 115 LEU LEU A . n A 1 90 SER 90 116 116 SER SER A . n A 1 91 SER 91 117 117 SER SER A . n A 1 92 SER 92 118 118 SER SER A . n A 1 93 TRP 93 119 119 TRP TRP A . n A 1 94 PHE 94 120 120 PHE PHE A . n A 1 95 GLY 95 121 121 GLY GLY A . n A 1 96 PRO 96 122 122 PRO PRO A . n A 1 97 LEU 97 123 123 LEU LEU A . n A 1 98 SER 98 124 124 SER SER A . n A 1 99 SER 99 125 125 SER SER A . n A 1 100 LEU 100 126 126 LEU LEU A . n A 1 101 LYS 101 127 127 LYS LYS A . n A 1 102 TYR 102 128 128 TYR TYR A . n A 1 103 LEU 103 129 129 LEU LEU A . n A 1 104 ASN 104 130 130 ASN ASN A . n A 1 105 LEU 105 131 131 LEU LEU A . n A 1 106 MET 106 132 132 MET MET A . n A 1 107 GLY 107 133 133 GLY GLY A . n A 1 108 ASN 108 134 134 ASN ASN A . n A 1 109 PRO 109 135 135 PRO PRO A . n A 1 110 TYR 110 136 136 TYR TYR A . n A 1 111 GLN 111 137 137 GLN GLN A . n A 1 112 THR 112 138 138 THR THR A . n A 1 113 LEU 113 139 139 LEU LEU A . n A 1 114 GLY 114 140 140 GLY GLY A . n A 1 115 VAL 115 141 141 VAL VAL A . n A 1 116 THR 116 142 142 THR THR A . n A 1 117 SER 117 143 143 SER SER A . n A 1 118 LEU 118 144 144 LEU LEU A . n A 1 119 PHE 119 145 145 PHE PHE A . n A 1 120 PRO 120 146 146 PRO PRO A . n A 1 121 ASN 121 147 147 ASN ASN A . n A 1 122 LEU 122 148 148 LEU LEU A . n A 1 123 THR 123 149 149 THR THR A . n A 1 124 ASN 124 150 150 ASN ASN A . n A 1 125 LEU 125 151 151 LEU LEU A . n A 1 126 GLN 126 152 152 GLN GLN A . n A 1 127 THR 127 153 153 THR THR A . n A 1 128 LEU 128 154 154 LEU LEU A . n A 1 129 ARG 129 155 155 ARG ARG A . n A 1 130 ILE 130 156 156 ILE ILE A . n A 1 131 GLY 131 157 157 GLY GLY A . n A 1 132 ASN 132 158 158 ASN ASN A . n A 1 133 VAL 133 159 159 VAL VAL A . n A 1 134 GLU 134 160 160 GLU GLU A . n A 1 135 THR 135 161 161 THR THR A . n A 1 136 PHE 136 162 162 PHE PHE A . n A 1 137 SER 137 163 163 SER SER A . n A 1 138 GLU 138 164 164 GLU GLU A . n A 1 139 ILE 139 165 165 ILE ILE A . n A 1 140 ARG 140 166 166 ARG ARG A . n A 1 141 ARG 141 167 167 ARG ARG A . n A 1 142 ILE 142 168 168 ILE ILE A . n A 1 143 ASP 143 169 169 ASP ASP A . n A 1 144 PHE 144 170 170 PHE PHE A . n A 1 145 ALA 145 171 171 ALA ALA A . n A 1 146 GLY 146 172 172 GLY GLY A . n A 1 147 LEU 147 173 173 LEU LEU A . n A 1 148 THR 148 174 174 THR THR A . n A 1 149 SER 149 175 175 SER SER A . n A 1 150 LEU 150 176 176 LEU LEU A . n A 1 151 ASN 151 177 177 ASN ASN A . n A 1 152 GLU 152 178 178 GLU GLU A . n A 1 153 LEU 153 179 179 LEU LEU A . n A 1 154 GLU 154 180 180 GLU GLU A . n A 1 155 ILE 155 181 181 ILE ILE A . n A 1 156 LYS 156 182 182 LYS LYS A . n A 1 157 ALA 157 183 183 ALA ALA A . n A 1 158 LEU 158 184 184 LEU LEU A . n A 1 159 SER 159 185 185 SER SER A . n A 1 160 LEU 160 186 186 LEU LEU A . n A 1 161 ARG 161 187 187 ARG ARG A . n A 1 162 ASN 162 188 188 ASN ASN A . n A 1 163 TYR 163 189 189 TYR TYR A . n A 1 164 GLN 164 190 190 GLN GLN A . n A 1 165 SER 165 191 191 SER SER A . n A 1 166 GLN 166 192 192 GLN GLN A . n A 1 167 SER 167 193 193 SER SER A . n A 1 168 LEU 168 194 194 LEU LEU A . n A 1 169 LYS 169 195 195 LYS LYS A . n A 1 170 SER 170 196 196 SER SER A . n A 1 171 ILE 171 197 197 ILE ILE A . n A 1 172 ARG 172 198 198 ARG ARG A . n A 1 173 ASP 173 199 199 ASP ASP A . n A 1 174 ILE 174 200 200 ILE ILE A . n A 1 175 HIS 175 201 201 HIS HIS A . n A 1 176 HIS 176 202 202 HIS HIS A . n A 1 177 LEU 177 203 203 LEU LEU A . n A 1 178 THR 178 204 204 THR THR A . n A 1 179 LEU 179 205 205 LEU LEU A . n A 1 180 HIS 180 206 206 HIS HIS A . n A 1 181 LEU 181 207 207 LEU LEU A . n A 1 182 SER 182 208 208 SER SER A . n A 1 183 GLU 183 209 209 GLU GLU A . n A 1 184 SER 184 210 210 SER SER A . n A 1 185 ALA 185 211 211 ALA ALA A . n A 1 186 PHE 186 212 212 PHE PHE A . n A 1 187 LEU 187 213 213 LEU LEU A . n A 1 188 LEU 188 214 214 LEU LEU A . n A 1 189 GLU 189 215 215 GLU GLU A . n A 1 190 ILE 190 216 216 ILE ILE A . n A 1 191 PHE 191 217 217 PHE PHE A . n A 1 192 ALA 192 218 218 ALA ALA A . n A 1 193 ASP 193 219 219 ASP ASP A . n A 1 194 ILE 194 220 220 ILE ILE A . n A 1 195 LEU 195 221 221 LEU LEU A . n A 1 196 SER 196 222 222 SER SER A . n A 1 197 SER 197 223 223 SER SER A . n A 1 198 VAL 198 224 224 VAL VAL A . n A 1 199 ARG 199 225 225 ARG ARG A . n A 1 200 TYR 200 226 226 TYR TYR A . n A 1 201 LEU 201 227 227 LEU LEU A . n A 1 202 GLU 202 228 228 GLU GLU A . n A 1 203 LEU 203 229 229 LEU LEU A . n A 1 204 ARG 204 230 230 ARG ARG A . n A 1 205 ASP 205 231 231 ASP ASP A . n A 1 206 THR 206 232 232 THR THR A . n A 1 207 ASN 207 233 233 ASN ASN A . n A 1 208 LEU 208 234 234 LEU LEU A . n A 1 209 ALA 209 235 235 ALA ALA A . n A 1 210 ARG 210 236 236 ARG ARG A . n A 1 211 PHE 211 237 237 PHE PHE A . n A 1 212 GLN 212 238 238 GLN GLN A . n A 1 213 PHE 213 239 239 PHE PHE A . n A 1 214 SER 214 240 240 SER SER A . n A 1 215 PRO 215 241 241 PRO PRO A . n A 1 216 LEU 216 242 242 LEU LEU A . n A 1 217 PRO 217 243 243 PRO PRO A . n A 1 218 VAL 218 244 244 VAL VAL A . n A 1 219 ASP 219 245 245 ASP ASP A . n A 1 220 GLU 220 246 246 GLU GLU A . n A 1 221 VAL 221 247 247 VAL VAL A . n A 1 222 SER 222 248 248 SER SER A . n A 1 223 SER 223 249 249 SER SER A . n A 1 224 PRO 224 250 250 PRO PRO A . n A 1 225 MET 225 251 251 MET MET A . n A 1 226 LYS 226 252 252 LYS LYS A . n A 1 227 LYS 227 253 253 LYS LYS A . n A 1 228 LEU 228 254 254 LEU LEU A . n A 1 229 ALA 229 255 255 ALA ALA A . n A 1 230 PHE 230 256 256 PHE PHE A . n A 1 231 ARG 231 257 257 ARG ARG A . n A 1 232 GLY 232 258 258 GLY GLY A . n A 1 233 SER 233 259 259 SER SER A . n A 1 234 VAL 234 260 260 VAL VAL A . n A 1 235 LEU 235 261 261 LEU LEU A . n A 1 236 THR 236 262 262 THR THR A . n A 1 237 ASP 237 263 263 ASP ASP A . n A 1 238 GLU 238 264 264 GLU GLU A . n A 1 239 SER 239 265 265 SER SER A . n A 1 240 PHE 240 266 266 PHE PHE A . n A 1 241 ASN 241 267 267 ASN ASN A . n A 1 242 GLU 242 268 268 GLU GLU A . n A 1 243 LEU 243 269 269 LEU LEU A . n A 1 244 LEU 244 270 270 LEU LEU A . n A 1 245 LYS 245 271 271 LYS LYS A . n A 1 246 LEU 246 272 272 LEU LEU A . n A 1 247 LEU 247 273 273 LEU LEU A . n A 1 248 ARG 248 274 274 ARG ARG A . n A 1 249 TYR 249 275 275 TYR TYR A . n A 1 250 ILE 250 276 276 ILE ILE A . n A 1 251 LEU 251 277 277 LEU LEU A . n A 1 252 GLU 252 278 278 GLU GLU A . n A 1 253 LEU 253 279 279 LEU LEU A . n A 1 254 SER 254 280 280 SER SER A . n A 1 255 GLU 255 281 281 GLU GLU A . n A 1 256 VAL 256 282 282 VAL VAL A . n A 1 257 GLU 257 283 283 GLU GLU A . n A 1 258 PHE 258 284 284 PHE PHE A . n A 1 259 ASP 259 285 285 ASP ASP A . n A 1 260 ASP 260 286 286 ASP ASP A . n A 1 261 CYS 261 287 287 CYS CYS A . n A 1 262 THR 262 288 288 THR THR A . n A 1 263 LEU 263 289 289 LEU LEU A . n A 1 264 ASN 264 290 290 ASN ASN A . n A 1 265 GLY 265 291 291 GLY GLY A . n A 1 266 LEU 266 292 292 LEU LEU A . n A 1 267 GLY 267 293 293 GLY GLY A . n A 1 268 ASP 268 294 294 ASP ASP A . n A 1 269 PHE 269 295 295 PHE PHE A . n A 1 270 ASN 270 296 296 ASN ASN A . n A 1 271 PRO 271 297 297 PRO PRO A . n A 1 272 SER 272 298 298 SER SER A . n A 1 273 GLU 273 299 299 GLU GLU A . n A 1 274 SER 274 300 300 SER SER A . n A 1 275 ASP 275 301 301 ASP ASP A . n A 1 276 VAL 276 302 302 VAL VAL A . n A 1 277 VAL 277 303 303 VAL VAL A . n A 1 278 SER 278 304 304 SER SER A . n A 1 279 GLU 279 305 305 GLU GLU A . n A 1 280 LEU 280 306 306 LEU LEU A . n A 1 281 GLY 281 307 307 GLY GLY A . n A 1 282 LYS 282 308 308 LYS LYS A . n A 1 283 VAL 283 309 309 VAL VAL A . n A 1 284 GLU 284 310 310 GLU GLU A . n A 1 285 THR 285 311 311 THR THR A . n A 1 286 VAL 286 312 312 VAL VAL A . n A 1 287 THR 287 313 313 THR THR A . n A 1 288 ILE 288 314 314 ILE ILE A . n A 1 289 ARG 289 315 315 ARG ARG A . n A 1 290 ARG 290 316 316 ARG ARG A . n A 1 291 LEU 291 317 317 LEU LEU A . n A 1 292 HIS 292 318 318 HIS HIS A . n A 1 293 ILE 293 319 319 ILE ILE A . n A 1 294 PRO 294 320 320 PRO PRO A . n A 1 295 GLN 295 321 321 GLN GLN A . n A 1 296 PHE 296 322 322 PHE PHE A . n A 1 297 TYR 297 323 323 TYR TYR A . n A 1 298 LEU 298 324 324 LEU LEU A . n A 1 299 PHE 299 325 325 PHE PHE A . n A 1 300 TYR 300 326 326 TYR TYR A . n A 1 301 ASP 301 327 327 ASP ASP A . n A 1 302 LEU 302 328 328 LEU LEU A . n A 1 303 SER 303 329 329 SER SER A . n A 1 304 THR 304 330 330 THR THR A . n A 1 305 VAL 305 331 331 VAL VAL A . n A 1 306 TYR 306 332 332 TYR TYR A . n A 1 307 SER 307 333 333 SER SER A . n A 1 308 LEU 308 334 334 LEU LEU A . n A 1 309 LEU 309 335 335 LEU LEU A . n A 1 310 GLU 310 336 336 GLU GLU A . n A 1 311 LYS 311 337 337 LYS LYS A . n A 1 312 VAL 312 338 338 VAL VAL A . n A 1 313 LYS 313 339 339 LYS LYS A . n A 1 314 ARG 314 340 340 ARG ARG A . n A 1 315 ILE 315 341 341 ILE ILE A . n A 1 316 THR 316 342 342 THR THR A . n A 1 317 VAL 317 343 343 VAL VAL A . n A 1 318 GLU 318 344 344 GLU GLU A . n A 1 319 ASN 319 345 345 ASN ASN A . n A 1 320 SER 320 346 346 SER SER A . n A 1 321 LYS 321 347 347 LYS LYS A . n A 1 322 VAL 322 348 348 VAL VAL A . n A 1 323 PHE 323 349 349 PHE PHE A . n A 1 324 LEU 324 350 350 LEU LEU A . n A 1 325 VAL 325 351 351 VAL VAL A . n A 1 326 PRO 326 352 352 PRO PRO A . n A 1 327 CYS 327 353 353 CYS CYS A . n A 1 328 SER 328 354 354 SER SER A . n A 1 329 PHE 329 355 355 PHE PHE A . n A 1 330 SER 330 356 356 SER SER A . n A 1 331 GLN 331 357 357 GLN GLN A . n A 1 332 HIS 332 358 358 HIS HIS A . n A 1 333 LEU 333 359 359 LEU LEU A . n A 1 334 LYS 334 360 360 LYS LYS A . n A 1 335 SER 335 361 361 SER SER A . n A 1 336 LEU 336 362 362 LEU LEU A . n A 1 337 GLU 337 363 363 GLU GLU A . n A 1 338 PHE 338 364 364 PHE PHE A . n A 1 339 LEU 339 365 365 LEU LEU A . n A 1 340 ASP 340 366 366 ASP ASP A . n A 1 341 LEU 341 367 367 LEU LEU A . n A 1 342 SER 342 368 368 SER SER A . n A 1 343 GLU 343 369 369 GLU GLU A . n A 1 344 ASN 344 370 370 ASN ASN A . n A 1 345 LEU 345 371 371 LEU LEU A . n A 1 346 MET 346 372 372 MET MET A . n A 1 347 VAL 347 373 373 VAL VAL A . n A 1 348 GLU 348 374 374 GLU GLU A . n A 1 349 GLU 349 375 375 GLU GLU A . n A 1 350 TYR 350 376 376 TYR TYR A . n A 1 351 LEU 351 377 377 LEU LEU A . n A 1 352 LYS 352 378 378 LYS LYS A . n A 1 353 ASN 353 379 379 ASN ASN A . n A 1 354 SER 354 380 380 SER SER A . n A 1 355 ALA 355 381 381 ALA ALA A . n A 1 356 CYS 356 382 382 CYS CYS A . n A 1 357 LYS 357 383 383 LYS LYS A . n A 1 358 GLY 358 384 384 GLY GLY A . n A 1 359 ALA 359 385 385 ALA ALA A . n A 1 360 TRP 360 386 386 TRP TRP A . n A 1 361 PRO 361 387 387 PRO PRO A . n A 1 362 SER 362 388 388 SER SER A . n A 1 363 LEU 363 389 389 LEU LEU A . n A 1 364 GLN 364 390 390 GLN GLN A . n A 1 365 THR 365 391 391 THR THR A . n A 1 366 LEU 366 392 392 LEU LEU A . n A 1 367 VAL 367 393 393 VAL VAL A . n A 1 368 LEU 368 394 394 LEU LEU A . n A 1 369 SER 369 395 395 SER SER A . n A 1 370 GLN 370 396 396 GLN GLN A . n A 1 371 ASN 371 397 397 ASN ASN A . n A 1 372 HIS 372 398 398 HIS HIS A . n A 1 373 LEU 373 399 399 LEU LEU A . n A 1 374 ARG 374 400 400 ARG ARG A . n A 1 375 SER 375 401 401 SER SER A . n A 1 376 MET 376 402 402 MET MET A . n A 1 377 GLN 377 403 403 GLN GLN A . n A 1 378 LYS 378 404 404 LYS LYS A . n A 1 379 THR 379 405 405 THR THR A . n A 1 380 GLY 380 406 406 GLY GLY A . n A 1 381 GLU 381 407 407 GLU GLU A . n A 1 382 ILE 382 408 408 ILE ILE A . n A 1 383 LEU 383 409 409 LEU LEU A . n A 1 384 LEU 384 410 410 LEU LEU A . n A 1 385 THR 385 411 411 THR THR A . n A 1 386 LEU 386 412 412 LEU LEU A . n A 1 387 LYS 387 413 413 LYS LYS A . n A 1 388 ASN 388 414 414 ASN ASN A . n A 1 389 LEU 389 415 415 LEU LEU A . n A 1 390 THR 390 416 416 THR THR A . n A 1 391 SER 391 417 417 SER SER A . n A 1 392 LEU 392 418 418 LEU LEU A . n A 1 393 ASP 393 419 419 ASP ASP A . n A 1 394 ILE 394 420 420 ILE ILE A . n A 1 395 SER 395 421 421 SER SER A . n A 1 396 ARG 396 422 422 ARG ARG A . n A 1 397 ASN 397 423 423 ASN ASN A . n A 1 398 THR 398 424 424 THR THR A . n A 1 399 PHE 399 425 425 PHE PHE A . n A 1 400 HIS 400 426 426 HIS HIS A . n A 1 401 PRO 401 427 427 PRO PRO A . n A 1 402 MET 402 428 428 MET MET A . n A 1 403 PRO 403 429 429 PRO PRO A . n A 1 404 ASP 404 430 430 ASP ASP A . n A 1 405 SER 405 431 431 SER SER A . n A 1 406 CYS 406 432 432 CYS CYS A . n A 1 407 GLN 407 433 433 GLN GLN A . n A 1 408 TRP 408 434 434 TRP TRP A . n A 1 409 PRO 409 435 435 PRO PRO A . n A 1 410 GLU 410 436 436 GLU GLU A . n A 1 411 LYS 411 437 437 LYS LYS A . n A 1 412 MET 412 438 438 MET MET A . n A 1 413 ARG 413 439 439 ARG ARG A . n A 1 414 PHE 414 440 440 PHE PHE A . n A 1 415 LEU 415 441 441 LEU LEU A . n A 1 416 ASN 416 442 442 ASN ASN A . n A 1 417 LEU 417 443 443 LEU LEU A . n A 1 418 SER 418 444 444 SER SER A . n A 1 419 SER 419 445 445 SER SER A . n A 1 420 THR 420 446 446 THR THR A . n A 1 421 GLY 421 447 447 GLY GLY A . n A 1 422 ILE 422 448 448 ILE ILE A . n A 1 423 ARG 423 449 449 ARG ARG A . n A 1 424 VAL 424 450 450 VAL VAL A . n A 1 425 VAL 425 451 451 VAL VAL A . n A 1 426 LYS 426 452 452 LYS LYS A . n A 1 427 THR 427 453 453 THR THR A . n A 1 428 CYS 428 454 454 CYS CYS A . n A 1 429 ILE 429 455 455 ILE ILE A . n A 1 430 PRO 430 456 456 PRO PRO A . n A 1 431 GLN 431 457 457 GLN GLN A . n A 1 432 THR 432 458 458 THR THR A . n A 1 433 LEU 433 459 459 LEU LEU A . n A 1 434 GLU 434 460 460 GLU GLU A . n A 1 435 VAL 435 461 461 VAL VAL A . n A 1 436 LEU 436 462 462 LEU LEU A . n A 1 437 ASP 437 463 463 ASP ASP A . n A 1 438 VAL 438 464 464 VAL VAL A . n A 1 439 SER 439 465 465 SER SER A . n A 1 440 ASN 440 466 466 ASN ASN A . n A 1 441 ASN 441 467 467 ASN ASN A . n A 1 442 ASN 442 468 468 ASN ASN A . n A 1 443 LEU 443 469 469 LEU LEU A . n A 1 444 ASP 444 470 470 ASP ASP A . n A 1 445 SER 445 471 471 SER SER A . n A 1 446 PHE 446 472 472 PHE PHE A . n A 1 447 SER 447 473 473 SER SER A . n A 1 448 LEU 448 474 474 LEU LEU A . n A 1 449 PHE 449 475 475 PHE PHE A . n A 1 450 LEU 450 476 476 LEU LEU A . n A 1 451 PRO 451 477 477 PRO PRO A . n A 1 452 ARG 452 478 478 ARG ARG A . n A 1 453 LEU 453 479 479 LEU LEU A . n A 1 454 GLN 454 480 480 GLN GLN A . n A 1 455 GLU 455 481 481 GLU GLU A . n A 1 456 LEU 456 482 482 LEU LEU A . n A 1 457 TYR 457 483 483 TYR TYR A . n A 1 458 ILE 458 484 484 ILE ILE A . n A 1 459 SER 459 485 485 SER SER A . n A 1 460 ARG 460 486 486 ARG ARG A . n A 1 461 ASN 461 487 487 ASN ASN A . n A 1 462 LYS 462 488 488 LYS LYS A . n A 1 463 LEU 463 489 489 LEU LEU A . n A 1 464 LYS 464 490 490 LYS LYS A . n A 1 465 THR 465 491 491 THR THR A . n A 1 466 LEU 466 492 492 LEU LEU A . n A 1 467 PRO 467 493 493 PRO PRO A . n A 1 468 ASP 468 494 494 ASP ASP A . n A 1 469 ALA 469 495 495 ALA ALA A . n A 1 470 SER 470 496 496 SER SER A . n A 1 471 LEU 471 497 497 LEU LEU A . n A 1 472 PHE 472 498 498 PHE PHE A . n A 1 473 PRO 473 499 499 PRO PRO A . n A 1 474 VAL 474 500 500 VAL VAL A . n A 1 475 LEU 475 501 501 LEU LEU A . n A 1 476 LEU 476 502 502 LEU LEU A . n A 1 477 VAL 477 503 503 VAL VAL A . n A 1 478 MET 478 504 504 MET MET A . n A 1 479 LYS 479 505 505 LYS LYS A . n A 1 480 ILE 480 506 506 ILE ILE A . n A 1 481 SER 481 507 507 SER SER A . n A 1 482 ARG 482 508 508 ARG ARG A . n A 1 483 ASN 483 509 509 ASN ASN A . n A 1 484 GLN 484 510 510 GLN GLN A . n A 1 485 LEU 485 511 511 LEU LEU A . n A 1 486 LYS 486 512 512 LYS LYS A . n A 1 487 SER 487 513 513 SER SER A . n A 1 488 VAL 488 514 514 VAL VAL A . n A 1 489 PRO 489 515 515 PRO PRO A . n A 1 490 ASP 490 516 516 ASP ASP A . n A 1 491 GLY 491 517 517 GLY GLY A . n A 1 492 ILE 492 518 518 ILE ILE A . n A 1 493 PHE 493 519 519 PHE PHE A . n A 1 494 ASP 494 520 520 ASP ASP A . n A 1 495 ARG 495 521 521 ARG ARG A . n A 1 496 LEU 496 522 522 LEU LEU A . n A 1 497 THR 497 523 523 THR THR A . n A 1 498 SER 498 524 524 SER SER A . n A 1 499 LEU 499 525 525 LEU LEU A . n A 1 500 GLN 500 526 526 GLN GLN A . n A 1 501 LYS 501 527 527 LYS LYS A . n A 1 502 ILE 502 528 528 ILE ILE A . n A 1 503 TRP 503 529 529 TRP TRP A . n A 1 504 LEU 504 530 530 LEU LEU A . n A 1 505 HIS 505 531 531 HIS HIS A . n A 1 506 THR 506 532 532 THR THR A . n A 1 507 ASN 507 533 533 ASN ASN A . n A 1 508 PRO 508 534 534 PRO PRO A . n A 1 509 TRP 509 535 535 TRP TRP A . n A 1 510 ASP 510 536 536 ASP ASP A . n A 1 511 CYS 511 537 537 CYS CYS A . n A 1 512 SER 512 538 538 SER SER A . n A 1 513 CYS 513 539 539 CYS CYS A . n A 1 514 PRO 514 540 540 PRO PRO A . n A 1 515 ARG 515 541 541 ARG ARG A . n A 1 516 ILE 516 542 542 ILE ILE A . n A 1 517 ASP 517 543 543 ASP ASP A . n A 1 518 TYR 518 544 544 TYR TYR A . n A 1 519 LEU 519 545 545 LEU LEU A . n A 1 520 SER 520 546 546 SER SER A . n A 1 521 ARG 521 547 547 ARG ARG A . n A 1 522 TRP 522 548 548 TRP TRP A . n A 1 523 LEU 523 549 549 LEU LEU A . n A 1 524 ASN 524 550 550 ASN ASN A . n A 1 525 LYS 525 551 551 LYS LYS A . n A 1 526 ASN 526 552 552 ASN ASN A . n A 1 527 SER 527 553 553 SER SER A . n A 1 528 GLN 528 554 554 GLN GLN A . n A 1 529 LYS 529 555 555 LYS LYS A . n A 1 530 GLU 530 556 556 GLU GLU A . n A 1 531 GLN 531 557 557 GLN GLN A . n A 1 532 GLY 532 558 558 GLY GLY A . n A 1 533 SER 533 559 559 SER SER A . n A 1 534 ALA 534 560 560 ALA ALA A . n A 1 535 LYS 535 561 561 LYS LYS A . n A 1 536 CYS 536 562 562 CYS CYS A . n A 1 537 SER 537 563 563 SER SER A . n A 1 538 GLY 538 564 564 GLY GLY A . n A 1 539 SER 539 565 565 SER SER A . n A 1 540 GLY 540 566 566 GLY GLY A . n A 1 541 LYS 541 567 567 LYS LYS A . n A 1 542 PRO 542 568 568 PRO PRO A . n A 1 543 VAL 543 569 569 VAL VAL A . n A 1 544 ARG 544 570 570 ARG ARG A . n A 1 545 SER 545 571 571 SER SER A . n A 1 546 ILE 546 572 572 ILE ILE A . n A 1 547 ILE 547 573 573 ILE ILE A . n A 1 548 CYS 548 574 574 CYS CYS A . n A 1 549 PRO 549 575 575 PRO PRO A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 NAG 1 821 821 NAG NAG A . E 5 PDJ 1 1 1 PDJ PC2 A . F 6 HOH 1 822 1 HOH TIP A . F 6 HOH 2 823 2 HOH TIP A . F 6 HOH 3 824 3 HOH TIP A . F 6 HOH 4 825 4 HOH TIP A . F 6 HOH 5 826 5 HOH TIP A . F 6 HOH 6 827 6 HOH TIP A . F 6 HOH 7 828 7 HOH TIP A . F 6 HOH 8 829 8 HOH TIP A . F 6 HOH 9 830 9 HOH TIP A . F 6 HOH 10 831 10 HOH TIP A . F 6 HOH 11 832 11 HOH TIP A . F 6 HOH 12 833 12 HOH TIP A . F 6 HOH 13 834 13 HOH TIP A . F 6 HOH 14 835 14 HOH TIP A . F 6 HOH 15 836 15 HOH TIP A . F 6 HOH 16 837 16 HOH TIP A . F 6 HOH 17 838 17 HOH TIP A . F 6 HOH 18 839 18 HOH TIP A . F 6 HOH 19 840 19 HOH TIP A . F 6 HOH 20 841 20 HOH TIP A . F 6 HOH 21 842 21 HOH TIP A . F 6 HOH 22 843 22 HOH TIP A . F 6 HOH 23 844 23 HOH TIP A . F 6 HOH 24 845 24 HOH TIP A . F 6 HOH 25 846 25 HOH TIP A . F 6 HOH 26 847 26 HOH TIP A . F 6 HOH 27 848 27 HOH TIP A . F 6 HOH 28 849 28 HOH TIP A . F 6 HOH 29 850 29 HOH TIP A . F 6 HOH 30 851 30 HOH TIP A . F 6 HOH 31 852 31 HOH TIP A . F 6 HOH 32 853 32 HOH TIP A . F 6 HOH 33 854 33 HOH TIP A . F 6 HOH 34 855 34 HOH TIP A . F 6 HOH 35 856 35 HOH TIP A . F 6 HOH 36 857 36 HOH TIP A . F 6 HOH 37 858 37 HOH TIP A . F 6 HOH 38 859 38 HOH TIP A . F 6 HOH 39 860 39 HOH TIP A . F 6 HOH 40 861 40 HOH TIP A . F 6 HOH 41 862 41 HOH TIP A . F 6 HOH 42 863 42 HOH TIP A . F 6 HOH 43 864 43 HOH TIP A . F 6 HOH 44 865 44 HOH TIP A . F 6 HOH 45 866 45 HOH TIP A . F 6 HOH 46 867 46 HOH TIP A . F 6 HOH 47 868 47 HOH TIP A . F 6 HOH 48 869 48 HOH TIP A . F 6 HOH 49 870 49 HOH TIP A . F 6 HOH 50 871 50 HOH TIP A . F 6 HOH 51 872 51 HOH TIP A . F 6 HOH 52 873 52 HOH TIP A . F 6 HOH 53 874 53 HOH TIP A . F 6 HOH 54 875 54 HOH TIP A . F 6 HOH 55 876 55 HOH TIP A . F 6 HOH 56 877 56 HOH TIP A . F 6 HOH 57 878 57 HOH TIP A . F 6 HOH 58 879 58 HOH TIP A . F 6 HOH 59 880 59 HOH TIP A . F 6 HOH 60 881 60 HOH TIP A . F 6 HOH 61 882 61 HOH TIP A . F 6 HOH 62 883 62 HOH TIP A . F 6 HOH 63 884 63 HOH TIP A . F 6 HOH 64 885 64 HOH TIP A . F 6 HOH 65 886 65 HOH TIP A . F 6 HOH 66 887 66 HOH TIP A . F 6 HOH 67 888 67 HOH TIP A . F 6 HOH 68 889 68 HOH TIP A . F 6 HOH 69 890 69 HOH TIP A . F 6 HOH 70 891 70 HOH TIP A . F 6 HOH 71 892 71 HOH TIP A . F 6 HOH 72 893 72 HOH TIP A . F 6 HOH 73 894 73 HOH TIP A . F 6 HOH 74 895 74 HOH TIP A . F 6 HOH 75 896 75 HOH TIP A . F 6 HOH 76 897 76 HOH TIP A . F 6 HOH 77 898 77 HOH TIP A . F 6 HOH 78 899 78 HOH TIP A . F 6 HOH 79 900 79 HOH TIP A . F 6 HOH 80 901 80 HOH TIP A . F 6 HOH 81 902 81 HOH TIP A . F 6 HOH 82 903 82 HOH TIP A . F 6 HOH 83 904 83 HOH TIP A . F 6 HOH 84 905 84 HOH TIP A . F 6 HOH 85 906 85 HOH TIP A . F 6 HOH 86 907 86 HOH TIP A . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A ASN 121 A ASN 147 ? ASN 'GLYCOSYLATION SITE' 2 A ASN 388 A ASN 414 ? ASN 'GLYCOSYLATION SITE' 3 A ASN 416 A ASN 442 ? ASN 'GLYCOSYLATION SITE' # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2007-10-02 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2017-08-16 4 'Structure model' 2 0 2020-07-29 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 4 'Structure model' repository Remediation 'Carbohydrate remediation' ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Non-polymer description' 2 2 'Structure model' 'Version format compliance' 3 3 'Structure model' 'Refinement description' 4 3 'Structure model' 'Source and taxonomy' 5 4 'Structure model' Advisory 6 4 'Structure model' 'Atomic model' 7 4 'Structure model' 'Data collection' 8 4 'Structure model' 'Database references' 9 4 'Structure model' 'Derived calculations' 10 4 'Structure model' 'Non-polymer description' 11 4 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' entity_src_gen 2 3 'Structure model' software 3 4 'Structure model' atom_site 4 4 'Structure model' chem_comp 5 4 'Structure model' database_PDB_caveat 6 4 'Structure model' entity 7 4 'Structure model' pdbx_branch_scheme 8 4 'Structure model' pdbx_chem_comp_identifier 9 4 'Structure model' pdbx_entity_branch 10 4 'Structure model' pdbx_entity_branch_descriptor 11 4 'Structure model' pdbx_entity_branch_link 12 4 'Structure model' pdbx_entity_branch_list 13 4 'Structure model' pdbx_entity_nonpoly 14 4 'Structure model' pdbx_nonpoly_scheme 15 4 'Structure model' pdbx_struct_assembly_gen 16 4 'Structure model' pdbx_validate_chiral 17 4 'Structure model' struct_asym 18 4 'Structure model' struct_conn 19 4 'Structure model' struct_ref_seq_dif 20 4 'Structure model' struct_site 21 4 'Structure model' struct_site_gen # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_atom_site.B_iso_or_equiv' 2 4 'Structure model' '_atom_site.Cartn_x' 3 4 'Structure model' '_atom_site.Cartn_y' 4 4 'Structure model' '_atom_site.Cartn_z' 5 4 'Structure model' '_atom_site.auth_asym_id' 6 4 'Structure model' '_atom_site.auth_atom_id' 7 4 'Structure model' '_atom_site.auth_comp_id' 8 4 'Structure model' '_atom_site.auth_seq_id' 9 4 'Structure model' '_atom_site.label_asym_id' 10 4 'Structure model' '_atom_site.label_atom_id' 11 4 'Structure model' '_atom_site.label_comp_id' 12 4 'Structure model' '_atom_site.label_entity_id' 13 4 'Structure model' '_atom_site.type_symbol' 14 4 'Structure model' '_chem_comp.formula' 15 4 'Structure model' '_chem_comp.formula_weight' 16 4 'Structure model' '_chem_comp.id' 17 4 'Structure model' '_chem_comp.mon_nstd_flag' 18 4 'Structure model' '_chem_comp.name' 19 4 'Structure model' '_chem_comp.type' 20 4 'Structure model' '_entity.formula_weight' 21 4 'Structure model' '_entity.pdbx_description' 22 4 'Structure model' '_entity.pdbx_number_of_molecules' 23 4 'Structure model' '_entity.type' 24 4 'Structure model' '_pdbx_struct_assembly_gen.asym_id_list' 25 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 26 4 'Structure model' '_struct_conn.pdbx_role' 27 4 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 28 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 29 4 'Structure model' '_struct_conn.ptnr1_label_asym_id' 30 4 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 31 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 32 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 33 4 'Structure model' '_struct_conn.ptnr2_label_asym_id' 34 4 'Structure model' '_struct_conn.ptnr2_label_comp_id' 35 4 'Structure model' '_struct_ref_seq_dif.details' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal HKL-2000 'data collection' . ? 1 PHASER phasing . ? 2 CNS refinement 1.2 ? 3 HKL-2000 'data reduction' . ? 4 SCALEPACK 'data scaling' . ? 5 # _pdbx_database_remark.id 600 _pdbx_database_remark.text ;HETROGEN PDJ is linked with five amino acid residues (SKKKK), which are not visible ; # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 C _pdbx_validate_rmsd_angle.auth_asym_id_1 A _pdbx_validate_rmsd_angle.auth_comp_id_1 CYS _pdbx_validate_rmsd_angle.auth_seq_id_1 539 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 N _pdbx_validate_rmsd_angle.auth_asym_id_2 A _pdbx_validate_rmsd_angle.auth_comp_id_2 PRO _pdbx_validate_rmsd_angle.auth_seq_id_2 540 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 CA _pdbx_validate_rmsd_angle.auth_asym_id_3 A _pdbx_validate_rmsd_angle.auth_comp_id_3 PRO _pdbx_validate_rmsd_angle.auth_seq_id_3 540 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 105.54 _pdbx_validate_rmsd_angle.angle_target_value 119.30 _pdbx_validate_rmsd_angle.angle_deviation -13.76 _pdbx_validate_rmsd_angle.angle_standard_deviation 1.50 _pdbx_validate_rmsd_angle.linker_flag Y # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 SER A 40 ? ? 33.55 65.04 2 1 LYS A 63 ? ? -107.42 50.02 3 1 CYS A 75 ? ? -62.22 78.00 4 1 SER A 85 ? ? 37.74 49.81 5 1 ARG A 87 ? ? -95.60 50.11 6 1 ASN A 110 ? ? -120.50 -164.45 7 1 LEU A 123 ? ? -110.52 60.16 8 1 PRO A 135 ? ? -71.60 31.19 9 1 ARG A 236 ? ? -97.55 34.52 10 1 PRO A 243 ? ? -90.17 40.42 11 1 ASP A 245 ? ? -49.44 152.23 12 1 GLU A 246 ? ? -40.40 101.60 13 1 ILE A 276 ? ? -114.02 53.43 14 1 ASN A 296 ? ? -159.60 76.37 15 1 SER A 298 ? ? -75.83 -158.85 16 1 ASP A 327 ? ? -37.56 100.90 17 1 LEU A 328 ? ? -65.73 68.38 18 1 ASN A 370 ? ? -129.08 -157.60 19 1 ALA A 381 ? ? -103.50 51.38 20 1 CYS A 382 ? ? -66.63 -178.06 21 1 TRP A 386 ? ? 31.13 71.85 22 1 SER A 395 ? ? -42.07 -83.49 23 1 ASN A 397 ? ? -129.09 -157.79 24 1 PRO A 429 ? ? -68.28 -171.47 25 1 ASN A 467 ? ? -123.89 -145.19 26 1 ASN A 487 ? ? -144.96 -158.68 27 1 ASN A 509 ? ? -128.02 -151.72 28 1 THR A 523 ? ? -69.62 5.21 29 1 HIS A 531 ? ? -57.66 170.41 30 1 ARG A 541 ? ? -58.76 -72.58 31 1 ILE A 542 ? ? -54.24 7.42 # _pdbx_validate_chiral.id 1 _pdbx_validate_chiral.PDB_model_num 1 _pdbx_validate_chiral.auth_atom_id C1 _pdbx_validate_chiral.label_alt_id ? _pdbx_validate_chiral.auth_asym_id A _pdbx_validate_chiral.auth_comp_id NAG _pdbx_validate_chiral.auth_seq_id 821 _pdbx_validate_chiral.PDB_ins_code ? _pdbx_validate_chiral.details 'WRONG HAND' _pdbx_validate_chiral.omega . # loop_ _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_mon_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.hetero B 2 NAG 1 B NAG 1 N NAG 801 n B 2 NAG 2 B NAG 2 N NAG 802 n C 3 NAG 1 C NAG 1 N NAG 811 n C 3 NAG 2 C NAG 2 N NAG 812 n C 3 MAN 3 C MAN 3 N MAN 813 n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier MAN 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DManpa MAN 'COMMON NAME' GMML 1.0 a-D-mannopyranose MAN 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 a-D-Manp MAN 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 Man NAG 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DGlcpNAcb NAG 'COMMON NAME' GMML 1.0 N-acetyl-b-D-glucopyranosamine NAG 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-GlcpNAc NAG 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 GlcNAc # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 2 oligosaccharide 3 oligosaccharide # loop_ _pdbx_entity_branch_descriptor.ordinal _pdbx_entity_branch_descriptor.entity_id _pdbx_entity_branch_descriptor.descriptor _pdbx_entity_branch_descriptor.type _pdbx_entity_branch_descriptor.program _pdbx_entity_branch_descriptor.program_version 1 2 DGlcpNAcb1-4DGlcpNAcb1- 'Glycam Condensed Sequence' GMML 1.0 2 2 'WURCS=2.0/1,2,1/[a2122h-1b_1-5_2*NCC/3=O]/1-1/a4-b1' WURCS PDB2Glycan 1.1.0 3 2 '[]{[(4+1)][b-D-GlcpNAc]{[(4+1)][b-D-GlcpNAc]{}}}' LINUCS PDB-CARE ? 4 3 DManpa1-4DGlcpNAcb1-4DGlcpNAcb1- 'Glycam Condensed Sequence' GMML 1.0 5 3 'WURCS=2.0/2,3,2/[a2122h-1b_1-5_2*NCC/3=O][a1122h-1a_1-5]/1-1-2/a4-b1_b4-c1' WURCS PDB2Glycan 1.1.0 6 3 '[]{[(4+1)][b-D-GlcpNAc]{[(4+1)][b-D-GlcpNAc]{[(4+1)][a-D-Manp]{}}}}' LINUCS PDB-CARE ? # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.value_order _pdbx_entity_branch_link.details 1 2 2 NAG C1 O1 1 NAG O4 HO4 sing ? 2 3 2 NAG C1 O1 1 NAG O4 HO4 sing ? 3 3 3 MAN C1 O1 2 NAG O4 HO4 sing ? # loop_ _pdbx_entity_branch_list.entity_id _pdbx_entity_branch_list.comp_id _pdbx_entity_branch_list.num _pdbx_entity_branch_list.hetero 2 NAG 1 n 2 NAG 2 n 3 NAG 1 n 3 NAG 2 n 3 MAN 3 n # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 4 2-acetamido-2-deoxy-beta-D-glucopyranose NAG 5 '(2R)-3-{[(2R)-2-AMINO-3-HYDROXYPROPYL]THIO}PROPANE-1,2-DIYL DIHEXADECANOATE' PDJ 6 water HOH #