data_2Z8L # _entry.id 2Z8L # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.380 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2Z8L pdb_00002z8l 10.2210/pdb2z8l/pdb RCSB RCSB027657 ? ? WWPDB D_1000027657 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 1M4V SSL5 unspecified PDB 2R61 'SSL5 complexed with sialyl Lewis X at pH 7.4' unspecified # _pdbx_database_status.entry_id 2Z8L _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.recvd_initial_deposition_date 2007-09-06 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Baker, H.M.' 1 'Basu, I.' 2 'Chung, M.C.' 3 'Caradoc Davies, T.' 4 'Fraser, J.D.' 5 'Baker, E.N.' 6 # _citation.id primary _citation.title ;Crystal structures of the staphylococcal toxin SSL5 in complex with sialyl Lewis X reveal a conserved binding site that shares common features with viral and bacterial sialic acid binding proteins ; _citation.journal_abbrev J.Mol.Biol. _citation.journal_volume 374 _citation.page_first 1298 _citation.page_last 1308 _citation.year 2007 _citation.journal_id_ASTM JMOBAK _citation.country UK _citation.journal_id_ISSN 0022-2836 _citation.journal_id_CSD 0070 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 17996251 _citation.pdbx_database_id_DOI 10.1016/j.jmb.2007.09.091 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Baker, H.M.' 1 ? primary 'Basu, I.' 2 ? primary 'Chung, M.C.' 3 ? primary 'Caradoc-Davies, T.' 4 ? primary 'Fraser, J.D.' 5 ? primary 'Baker, E.N.' 6 ? # _cell.length_a 37.625 _cell.length_b 78.237 _cell.length_c 55.276 _cell.angle_alpha 90.000 _cell.angle_beta 127.020 _cell.angle_gamma 90.000 _cell.entry_id 2Z8L _cell.pdbx_unique_axis ? _cell.Z_PDB 2 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.space_group_name_H-M 'P 1 21 1' _symmetry.entry_id 2Z8L _symmetry.Int_Tables_number 4 _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Exotoxin 3' 24513.141 1 ? ? 'UNP residues 31-234' ? 2 branched man ;N-acetyl-alpha-neuraminic acid-(2-3)-beta-D-galactopyranose-(1-4)-[alpha-L-fucopyranose-(1-3)]2-acetamido-2-deoxy-beta-D-glucopyranose ; 820.744 1 ? ? ? ? 3 non-polymer syn 'PHOSPHATE ION' 94.971 1 ? ? ? ? 4 non-polymer syn GLYCEROL 92.094 1 ? ? ? ? 5 water nat water 18.015 111 ? ? ? ? # loop_ _entity_name_com.entity_id _entity_name_com.name 1 'superantigen-like protein SSL5' 2 'Sialyl-Lewis X antigen, beta anomer' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GPGSSEHKAKYENVTKDIFDLRDYYSGASKELKNVTGYRYSKGGKHYLIFDKHQKFTRIQIFGKDIERLKTRKNPGLDIF VVKEAENRNGTVFSYGGVTKKNQGAYYDYLNAPKFVIKKEVDAGVYTHVKRHYIYKEEVSLKELDFKLRQYLIQNFDLYK KFPKDSKIKVIMKDGGYYTFELNKKLQPHRMSDVIDGRNIEKMEANIR ; _entity_poly.pdbx_seq_one_letter_code_can ;GPGSSEHKAKYENVTKDIFDLRDYYSGASKELKNVTGYRYSKGGKHYLIFDKHQKFTRIQIFGKDIERLKTRKNPGLDIF VVKEAENRNGTVFSYGGVTKKNQGAYYDYLNAPKFVIKKEVDAGVYTHVKRHYIYKEEVSLKELDFKLRQYLIQNFDLYK KFPKDSKIKVIMKDGGYYTFELNKKLQPHRMSDVIDGRNIEKMEANIR ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 PRO n 1 3 GLY n 1 4 SER n 1 5 SER n 1 6 GLU n 1 7 HIS n 1 8 LYS n 1 9 ALA n 1 10 LYS n 1 11 TYR n 1 12 GLU n 1 13 ASN n 1 14 VAL n 1 15 THR n 1 16 LYS n 1 17 ASP n 1 18 ILE n 1 19 PHE n 1 20 ASP n 1 21 LEU n 1 22 ARG n 1 23 ASP n 1 24 TYR n 1 25 TYR n 1 26 SER n 1 27 GLY n 1 28 ALA n 1 29 SER n 1 30 LYS n 1 31 GLU n 1 32 LEU n 1 33 LYS n 1 34 ASN n 1 35 VAL n 1 36 THR n 1 37 GLY n 1 38 TYR n 1 39 ARG n 1 40 TYR n 1 41 SER n 1 42 LYS n 1 43 GLY n 1 44 GLY n 1 45 LYS n 1 46 HIS n 1 47 TYR n 1 48 LEU n 1 49 ILE n 1 50 PHE n 1 51 ASP n 1 52 LYS n 1 53 HIS n 1 54 GLN n 1 55 LYS n 1 56 PHE n 1 57 THR n 1 58 ARG n 1 59 ILE n 1 60 GLN n 1 61 ILE n 1 62 PHE n 1 63 GLY n 1 64 LYS n 1 65 ASP n 1 66 ILE n 1 67 GLU n 1 68 ARG n 1 69 LEU n 1 70 LYS n 1 71 THR n 1 72 ARG n 1 73 LYS n 1 74 ASN n 1 75 PRO n 1 76 GLY n 1 77 LEU n 1 78 ASP n 1 79 ILE n 1 80 PHE n 1 81 VAL n 1 82 VAL n 1 83 LYS n 1 84 GLU n 1 85 ALA n 1 86 GLU n 1 87 ASN n 1 88 ARG n 1 89 ASN n 1 90 GLY n 1 91 THR n 1 92 VAL n 1 93 PHE n 1 94 SER n 1 95 TYR n 1 96 GLY n 1 97 GLY n 1 98 VAL n 1 99 THR n 1 100 LYS n 1 101 LYS n 1 102 ASN n 1 103 GLN n 1 104 GLY n 1 105 ALA n 1 106 TYR n 1 107 TYR n 1 108 ASP n 1 109 TYR n 1 110 LEU n 1 111 ASN n 1 112 ALA n 1 113 PRO n 1 114 LYS n 1 115 PHE n 1 116 VAL n 1 117 ILE n 1 118 LYS n 1 119 LYS n 1 120 GLU n 1 121 VAL n 1 122 ASP n 1 123 ALA n 1 124 GLY n 1 125 VAL n 1 126 TYR n 1 127 THR n 1 128 HIS n 1 129 VAL n 1 130 LYS n 1 131 ARG n 1 132 HIS n 1 133 TYR n 1 134 ILE n 1 135 TYR n 1 136 LYS n 1 137 GLU n 1 138 GLU n 1 139 VAL n 1 140 SER n 1 141 LEU n 1 142 LYS n 1 143 GLU n 1 144 LEU n 1 145 ASP n 1 146 PHE n 1 147 LYS n 1 148 LEU n 1 149 ARG n 1 150 GLN n 1 151 TYR n 1 152 LEU n 1 153 ILE n 1 154 GLN n 1 155 ASN n 1 156 PHE n 1 157 ASP n 1 158 LEU n 1 159 TYR n 1 160 LYS n 1 161 LYS n 1 162 PHE n 1 163 PRO n 1 164 LYS n 1 165 ASP n 1 166 SER n 1 167 LYS n 1 168 ILE n 1 169 LYS n 1 170 VAL n 1 171 ILE n 1 172 MET n 1 173 LYS n 1 174 ASP n 1 175 GLY n 1 176 GLY n 1 177 TYR n 1 178 TYR n 1 179 THR n 1 180 PHE n 1 181 GLU n 1 182 LEU n 1 183 ASN n 1 184 LYS n 1 185 LYS n 1 186 LEU n 1 187 GLN n 1 188 PRO n 1 189 HIS n 1 190 ARG n 1 191 MET n 1 192 SER n 1 193 ASP n 1 194 VAL n 1 195 ILE n 1 196 ASP n 1 197 GLY n 1 198 ARG n 1 199 ASN n 1 200 ILE n 1 201 GLU n 1 202 LYS n 1 203 MET n 1 204 GLU n 1 205 ALA n 1 206 ASN n 1 207 ILE n 1 208 ARG n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Staphylococcus _entity_src_gen.pdbx_gene_src_gene ssl5 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain GL10 _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Staphylococcus aureus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 1280 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain AD494 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET32a.3C _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q9ZFS6_STAAU _struct_ref.pdbx_db_accession Q9ZFS6 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;SEHESKYENVTKDIFDLRDYYSRASKELKNVTGYRYSKGGKHYLIFDKNRKFTRIQIFGKDIERIKKRKNPGLDIFVVKE AENRNGTVYSYGGVTKKNQGAYYDYLSAPRFVIKKEVGAGVSVHVKRYYIYKEEISLKELDFKLRQYLIQDFDLYKKFPK ASKIKVTMKDGGYYTFELNKKLQTNRMSDVIDGRNIEKIEANIR ; _struct_ref.pdbx_align_begin 31 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2Z8L _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 5 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 208 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q9ZFS6 _struct_ref_seq.db_align_beg 31 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 234 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 204 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2Z8L GLY A 1 ? UNP Q9ZFS6 ? ? 'expression tag' -3 1 1 2Z8L PRO A 2 ? UNP Q9ZFS6 ? ? 'expression tag' -2 2 1 2Z8L GLY A 3 ? UNP Q9ZFS6 ? ? 'expression tag' -1 3 1 2Z8L SER A 4 ? UNP Q9ZFS6 ? ? 'expression tag' 0 4 1 2Z8L LYS A 8 ? UNP Q9ZFS6 GLU 34 'SEE REMARK 999' 4 5 1 2Z8L ALA A 9 ? UNP Q9ZFS6 SER 35 'SEE REMARK 999' 5 6 1 2Z8L GLY A 27 ? UNP Q9ZFS6 ARG 53 'SEE REMARK 999' 23 7 1 2Z8L HIS A 53 ? UNP Q9ZFS6 ASN 79 'SEE REMARK 999' 49 8 1 2Z8L GLN A 54 ? UNP Q9ZFS6 ARG 80 'SEE REMARK 999' 50 9 1 2Z8L LEU A 69 ? UNP Q9ZFS6 ILE 95 'SEE REMARK 999' 65 10 1 2Z8L THR A 71 ? UNP Q9ZFS6 LYS 97 'SEE REMARK 999' 67 11 1 2Z8L PHE A 93 ? UNP Q9ZFS6 TYR 119 'SEE REMARK 999' 89 12 1 2Z8L ASN A 111 ? UNP Q9ZFS6 SER 137 'SEE REMARK 999' 107 13 1 2Z8L LYS A 114 ? UNP Q9ZFS6 ARG 140 'SEE REMARK 999' 110 14 1 2Z8L ASP A 122 ? UNP Q9ZFS6 GLY 148 'SEE REMARK 999' 118 15 1 2Z8L TYR A 126 ? UNP Q9ZFS6 SER 152 'SEE REMARK 999' 122 16 1 2Z8L THR A 127 ? UNP Q9ZFS6 VAL 153 'SEE REMARK 999' 123 17 1 2Z8L HIS A 132 ? UNP Q9ZFS6 TYR 158 'SEE REMARK 999' 128 18 1 2Z8L VAL A 139 ? UNP Q9ZFS6 ILE 165 'SEE REMARK 999' 135 19 1 2Z8L ASN A 155 ? UNP Q9ZFS6 ASP 181 'SEE REMARK 999' 151 20 1 2Z8L ASP A 165 ? UNP Q9ZFS6 ALA 191 'SEE REMARK 999' 161 21 1 2Z8L ILE A 171 ? UNP Q9ZFS6 THR 197 'SEE REMARK 999' 167 22 1 2Z8L PRO A 188 ? UNP Q9ZFS6 THR 214 'SEE REMARK 999' 184 23 1 2Z8L HIS A 189 ? UNP Q9ZFS6 ASN 215 'SEE REMARK 999' 185 24 1 2Z8L MET A 203 ? UNP Q9ZFS6 ILE 229 'SEE REMARK 999' 199 25 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 FUC 'L-saccharide, alpha linking' . alpha-L-fucopyranose 'alpha-L-fucose; 6-deoxy-alpha-L-galactopyranose; L-fucose; fucose' 'C6 H12 O5' 164.156 GAL 'D-saccharide, beta linking' . beta-D-galactopyranose 'beta-D-galactose; D-galactose; galactose' 'C6 H12 O6' 180.156 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 GOL non-polymer . GLYCEROL 'GLYCERIN; PROPANE-1,2,3-TRIOL' 'C3 H8 O3' 92.094 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 NAG 'D-saccharide, beta linking' . 2-acetamido-2-deoxy-beta-D-glucopyranose ;N-acetyl-beta-D-glucosamine; 2-acetamido-2-deoxy-beta-D-glucose; 2-acetamido-2-deoxy-D-glucose; 2-acetamido-2-deoxy-glucose; N-ACETYL-D-GLUCOSAMINE ; 'C8 H15 N O6' 221.208 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PO4 non-polymer . 'PHOSPHATE ION' ? 'O4 P -3' 94.971 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 SIA 'D-saccharide, alpha linking' . 'N-acetyl-alpha-neuraminic acid' 'N-acetylneuraminic acid; sialic acid; alpha-sialic acid; O-SIALIC ACID' 'C11 H19 N O9' 309.270 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.entry_id 2Z8L _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 2.65 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 53.58 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.pH 4.6 _exptl_crystal_grow.temp 291 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_details '20% PEG 3350, 0.2M NaH2PO4, pH 4.6, VAPOR DIFFUSION, SITTING DROP, temperature 291K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 110 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MARMOSAIC 325 mm CCD' _diffrn_detector.pdbx_collection_date 2006-06-15 _diffrn_detector.details 'mirror, monochromator' # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator 'Double crystal monochromator' _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97892 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'SSRL BEAMLINE BL9-2' _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.97892 _diffrn_source.pdbx_synchrotron_site SSRL _diffrn_source.pdbx_synchrotron_beamline BL9-2 # _reflns.entry_id 2Z8L _reflns.observed_criterion_sigma_F 0.0 _reflns.observed_criterion_sigma_I 0.0 _reflns.d_resolution_high 1.65 _reflns.d_resolution_low 30.04 _reflns.number_all 30728 _reflns.number_obs 30702 _reflns.percent_possible_obs 99.8 _reflns.pdbx_Rmerge_I_obs 0.051 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 25.6 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 7.4 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 1.65 _reflns_shell.d_res_low 1.74 _reflns_shell.percent_possible_obs ? _reflns_shell.percent_possible_all 100.0 _reflns_shell.Rmerge_I_obs 0.667 _reflns_shell.meanI_over_sigI_obs 2.5 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_redundancy 7.4 _reflns_shell.number_unique_all 4497 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 2Z8L _refine.ls_d_res_high 1.650 _refine.ls_d_res_low 28.05 _refine.pdbx_ls_sigma_F 0.00 _refine.ls_percent_reflns_obs 99.810 _refine.ls_number_reflns_obs 30702 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.ls_R_factor_obs 0.183 _refine.ls_R_factor_R_work 0.181 _refine.ls_R_factor_R_free 0.218 _refine.ls_percent_reflns_R_free 5.000 _refine.ls_number_reflns_R_free 1538 _refine.B_iso_mean 16.920 _refine.aniso_B[1][1] 0.310 _refine.aniso_B[2][2] -0.220 _refine.aniso_B[3][3] 0.350 _refine.aniso_B[1][2] 0.000 _refine.aniso_B[1][3] 0.370 _refine.aniso_B[2][3] 0.000 _refine.correlation_coeff_Fo_to_Fc 0.969 _refine.correlation_coeff_Fo_to_Fc_free 0.952 _refine.pdbx_overall_ESU_R 0.087 _refine.pdbx_overall_ESU_R_Free 0.091 _refine.overall_SU_ML 0.061 _refine.overall_SU_B 3.434 _refine.solvent_model_details MASK _refine.pdbx_solvent_vdw_probe_radii 1.400 _refine.pdbx_solvent_ion_probe_radii 0.800 _refine.pdbx_solvent_shrinkage_radii 0.800 _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_ls_sigma_I 0.00 _refine.ls_number_reflns_all 30790 _refine.ls_R_factor_all 0.183 _refine.ls_redundancy_reflns_obs ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_starting_model 'PDB ENTRY 1M4V' _refine.pdbx_stereochem_target_val_spec_case ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.pdbx_isotropic_thermal_model ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag 'LIKELY RESIDUAL' _refine.pdbx_diffrn_id 1 _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1607 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 67 _refine_hist.number_atoms_solvent 111 _refine_hist.number_atoms_total 1785 _refine_hist.d_res_high 1.650 _refine_hist.d_res_low 28.05 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 1720 0.018 0.022 ? 'X-RAY DIFFRACTION' ? r_bond_other_d 1235 0.001 0.020 ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 2306 1.744 2.002 ? 'X-RAY DIFFRACTION' ? r_angle_other_deg 2982 0.910 3.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 193 6.175 5.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 85 33.736 23.529 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 321 13.459 15.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 11 15.319 15.000 ? 'X-RAY DIFFRACTION' ? r_chiral_restr 245 0.115 0.200 ? 'X-RAY DIFFRACTION' ? r_gen_planes_refined 1827 0.008 0.020 ? 'X-RAY DIFFRACTION' ? r_gen_planes_other 367 0.001 0.020 ? 'X-RAY DIFFRACTION' ? r_nbd_refined 278 0.210 0.200 ? 'X-RAY DIFFRACTION' ? r_nbd_other 1206 0.194 0.200 ? 'X-RAY DIFFRACTION' ? r_nbtor_refined 839 0.188 0.200 ? 'X-RAY DIFFRACTION' ? r_nbtor_other 952 0.094 0.200 ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 75 0.153 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 9 0.166 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other 23 0.236 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 7 0.143 0.200 ? 'X-RAY DIFFRACTION' ? r_mcbond_it 1240 1.866 1.500 ? 'X-RAY DIFFRACTION' ? r_mcbond_other 394 0.358 1.500 ? 'X-RAY DIFFRACTION' ? r_mcangle_it 1537 2.093 2.000 ? 'X-RAY DIFFRACTION' ? r_scbond_it 922 3.517 3.000 ? 'X-RAY DIFFRACTION' ? r_scangle_it 768 4.532 4.500 ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.d_res_high 1.650 _refine_ls_shell.d_res_low 1.693 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 100.000 _refine_ls_shell.number_reflns_R_work 2152 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.255 _refine_ls_shell.R_factor_R_free 0.300 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 119 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 2271 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 2Z8L _struct.title 'Crystal Structure of the Staphylococcal superantigen-like protein SSL5 at pH 4.6 complexed with sialyl Lewis X' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2Z8L _struct_keywords.pdbx_keywords 'SUGAR BINDING PROTEIN' _struct_keywords.text 'OB fold, B-grasp, SUGAR BINDING PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 5 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASP A 17 ? SER A 26 ? ASP A 13 SER A 22 1 ? 10 HELX_P HELX_P2 2 LYS A 64 ? LEU A 69 ? LYS A 60 LEU A 65 1 ? 6 HELX_P HELX_P3 3 LEU A 141 ? PHE A 156 ? LEU A 137 PHE A 152 1 ? 16 HELX_P HELX_P4 4 GLN A 187 ? MET A 191 ? GLN A 183 MET A 187 5 ? 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? B NAG . O4 ? ? ? 1_555 B GAL . C1 ? ? B NAG 1 B GAL 2 1_555 ? ? ? ? ? ? ? 1.449 ? ? covale2 covale both ? B NAG . O3 ? ? ? 1_555 B FUC . C1 ? ? B NAG 1 B FUC 4 1_555 ? ? ? ? ? ? ? 1.449 ? ? covale3 covale both ? B GAL . O3 ? ? ? 1_555 B SIA . C2 ? ? B GAL 2 B SIA 3 1_555 ? ? ? ? ? ? ? 1.447 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 7 ? B ? 5 ? C ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel A 5 6 ? anti-parallel A 6 7 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? parallel B 3 4 ? anti-parallel B 4 5 ? anti-parallel C 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ALA A 85 ? GLU A 86 ? ALA A 81 GLU A 82 A 2 VAL A 92 ? TYR A 95 ? VAL A 88 TYR A 91 A 3 LYS A 55 ? ILE A 61 ? LYS A 51 ILE A 57 A 4 LYS A 45 ? LYS A 52 ? LYS A 41 LYS A 48 A 5 LYS A 30 ? LYS A 42 ? LYS A 26 LYS A 38 A 6 LYS A 73 ? VAL A 81 ? LYS A 69 VAL A 77 A 7 VAL A 98 ? LYS A 100 ? VAL A 94 LYS A 96 B 1 GLY A 124 ? ARG A 131 ? GLY A 120 ARG A 127 B 2 LYS A 114 ? VAL A 121 ? LYS A 110 VAL A 117 B 3 ILE A 200 ? ILE A 207 ? ILE A 196 ILE A 203 B 4 LYS A 167 ? MET A 172 ? LYS A 163 MET A 168 B 5 TYR A 177 ? GLU A 181 ? TYR A 173 GLU A 177 C 1 GLU A 138 ? SER A 140 ? GLU A 134 SER A 136 C 2 VAL A 194 ? ASP A 196 ? VAL A 190 ASP A 192 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N ALA A 85 ? N ALA A 81 O PHE A 93 ? O PHE A 89 A 2 3 O VAL A 92 ? O VAL A 88 N ARG A 58 ? N ARG A 54 A 3 4 O ILE A 59 ? O ILE A 55 N LEU A 48 ? N LEU A 44 A 4 5 O TYR A 47 ? O TYR A 43 N TYR A 40 ? N TYR A 36 A 5 6 N LEU A 32 ? N LEU A 28 O ILE A 79 ? O ILE A 75 A 6 7 N ASP A 78 ? N ASP A 74 O THR A 99 ? O THR A 95 B 1 2 O HIS A 128 ? O HIS A 124 N ILE A 117 ? N ILE A 113 B 2 3 N LYS A 118 ? N LYS A 114 O ALA A 205 ? O ALA A 201 B 3 4 O LYS A 202 ? O LYS A 198 N ILE A 171 ? N ILE A 167 B 4 5 N ILE A 168 ? N ILE A 164 O PHE A 180 ? O PHE A 176 C 1 2 N VAL A 139 ? N VAL A 135 O ILE A 195 ? O ILE A 191 # _atom_sites.entry_id 2Z8L _atom_sites.fract_transf_matrix[1][1] 0.026578 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.020046 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.012782 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.022660 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 -3 ? ? ? A . n A 1 2 PRO 2 -2 ? ? ? A . n A 1 3 GLY 3 -1 ? ? ? A . n A 1 4 SER 4 0 ? ? ? A . n A 1 5 SER 5 1 ? ? ? A . n A 1 6 GLU 6 2 ? ? ? A . n A 1 7 HIS 7 3 ? ? ? A . n A 1 8 LYS 8 4 ? ? ? A . n A 1 9 ALA 9 5 ? ? ? A . n A 1 10 LYS 10 6 ? ? ? A . n A 1 11 TYR 11 7 ? ? ? A . n A 1 12 GLU 12 8 ? ? ? A . n A 1 13 ASN 13 9 ? ? ? A . n A 1 14 VAL 14 10 ? ? ? A . n A 1 15 THR 15 11 ? ? ? A . n A 1 16 LYS 16 12 ? ? ? A . n A 1 17 ASP 17 13 13 ASP ASP A . n A 1 18 ILE 18 14 14 ILE ILE A . n A 1 19 PHE 19 15 15 PHE PHE A . n A 1 20 ASP 20 16 16 ASP ASP A . n A 1 21 LEU 21 17 17 LEU LEU A . n A 1 22 ARG 22 18 18 ARG ARG A . n A 1 23 ASP 23 19 19 ASP ASP A . n A 1 24 TYR 24 20 20 TYR TYR A . n A 1 25 TYR 25 21 21 TYR TYR A . n A 1 26 SER 26 22 22 SER SER A . n A 1 27 GLY 27 23 23 GLY GLY A . n A 1 28 ALA 28 24 24 ALA ALA A . n A 1 29 SER 29 25 25 SER SER A . n A 1 30 LYS 30 26 26 LYS LYS A . n A 1 31 GLU 31 27 27 GLU GLU A . n A 1 32 LEU 32 28 28 LEU LEU A . n A 1 33 LYS 33 29 29 LYS LYS A . n A 1 34 ASN 34 30 30 ASN ASN A . n A 1 35 VAL 35 31 31 VAL VAL A . n A 1 36 THR 36 32 32 THR THR A . n A 1 37 GLY 37 33 33 GLY GLY A . n A 1 38 TYR 38 34 34 TYR TYR A . n A 1 39 ARG 39 35 35 ARG ARG A . n A 1 40 TYR 40 36 36 TYR TYR A . n A 1 41 SER 41 37 37 SER SER A . n A 1 42 LYS 42 38 38 LYS LYS A . n A 1 43 GLY 43 39 39 GLY GLY A . n A 1 44 GLY 44 40 40 GLY GLY A . n A 1 45 LYS 45 41 41 LYS LYS A . n A 1 46 HIS 46 42 42 HIS HIS A . n A 1 47 TYR 47 43 43 TYR TYR A . n A 1 48 LEU 48 44 44 LEU LEU A . n A 1 49 ILE 49 45 45 ILE ILE A . n A 1 50 PHE 50 46 46 PHE PHE A . n A 1 51 ASP 51 47 47 ASP ASP A . n A 1 52 LYS 52 48 48 LYS LYS A . n A 1 53 HIS 53 49 49 HIS HIS A . n A 1 54 GLN 54 50 50 GLN GLN A . n A 1 55 LYS 55 51 51 LYS LYS A . n A 1 56 PHE 56 52 52 PHE PHE A . n A 1 57 THR 57 53 53 THR THR A . n A 1 58 ARG 58 54 54 ARG ARG A . n A 1 59 ILE 59 55 55 ILE ILE A . n A 1 60 GLN 60 56 56 GLN GLN A . n A 1 61 ILE 61 57 57 ILE ILE A . n A 1 62 PHE 62 58 58 PHE PHE A . n A 1 63 GLY 63 59 59 GLY GLY A . n A 1 64 LYS 64 60 60 LYS LYS A . n A 1 65 ASP 65 61 61 ASP ASP A . n A 1 66 ILE 66 62 62 ILE ILE A . n A 1 67 GLU 67 63 63 GLU GLU A . n A 1 68 ARG 68 64 64 ARG ARG A . n A 1 69 LEU 69 65 65 LEU LEU A . n A 1 70 LYS 70 66 66 LYS LYS A . n A 1 71 THR 71 67 67 THR THR A . n A 1 72 ARG 72 68 68 ARG ARG A . n A 1 73 LYS 73 69 69 LYS LYS A . n A 1 74 ASN 74 70 70 ASN ASN A . n A 1 75 PRO 75 71 71 PRO PRO A . n A 1 76 GLY 76 72 72 GLY GLY A . n A 1 77 LEU 77 73 73 LEU LEU A . n A 1 78 ASP 78 74 74 ASP ASP A . n A 1 79 ILE 79 75 75 ILE ILE A . n A 1 80 PHE 80 76 76 PHE PHE A . n A 1 81 VAL 81 77 77 VAL VAL A . n A 1 82 VAL 82 78 78 VAL VAL A . n A 1 83 LYS 83 79 79 LYS LYS A . n A 1 84 GLU 84 80 80 GLU GLU A . n A 1 85 ALA 85 81 81 ALA ALA A . n A 1 86 GLU 86 82 82 GLU GLU A . n A 1 87 ASN 87 83 83 ASN ASN A . n A 1 88 ARG 88 84 84 ARG ARG A . n A 1 89 ASN 89 85 85 ASN ASN A . n A 1 90 GLY 90 86 86 GLY GLY A . n A 1 91 THR 91 87 87 THR THR A . n A 1 92 VAL 92 88 88 VAL VAL A . n A 1 93 PHE 93 89 89 PHE PHE A . n A 1 94 SER 94 90 90 SER SER A . n A 1 95 TYR 95 91 91 TYR TYR A . n A 1 96 GLY 96 92 92 GLY GLY A . n A 1 97 GLY 97 93 93 GLY GLY A . n A 1 98 VAL 98 94 94 VAL VAL A . n A 1 99 THR 99 95 95 THR THR A . n A 1 100 LYS 100 96 96 LYS LYS A . n A 1 101 LYS 101 97 97 LYS LYS A . n A 1 102 ASN 102 98 98 ASN ASN A . n A 1 103 GLN 103 99 99 GLN GLN A . n A 1 104 GLY 104 100 100 GLY GLY A . n A 1 105 ALA 105 101 101 ALA ALA A . n A 1 106 TYR 106 102 102 TYR TYR A . n A 1 107 TYR 107 103 103 TYR TYR A . n A 1 108 ASP 108 104 104 ASP ASP A . n A 1 109 TYR 109 105 105 TYR TYR A . n A 1 110 LEU 110 106 106 LEU LEU A . n A 1 111 ASN 111 107 107 ASN ASN A . n A 1 112 ALA 112 108 108 ALA ALA A . n A 1 113 PRO 113 109 109 PRO PRO A . n A 1 114 LYS 114 110 110 LYS LYS A . n A 1 115 PHE 115 111 111 PHE PHE A . n A 1 116 VAL 116 112 112 VAL VAL A . n A 1 117 ILE 117 113 113 ILE ILE A . n A 1 118 LYS 118 114 114 LYS LYS A . n A 1 119 LYS 119 115 115 LYS LYS A . n A 1 120 GLU 120 116 116 GLU GLU A . n A 1 121 VAL 121 117 117 VAL VAL A . n A 1 122 ASP 122 118 118 ASP ASP A . n A 1 123 ALA 123 119 119 ALA ALA A . n A 1 124 GLY 124 120 120 GLY GLY A . n A 1 125 VAL 125 121 121 VAL VAL A . n A 1 126 TYR 126 122 122 TYR TYR A . n A 1 127 THR 127 123 123 THR THR A . n A 1 128 HIS 128 124 124 HIS HIS A . n A 1 129 VAL 129 125 125 VAL VAL A . n A 1 130 LYS 130 126 126 LYS LYS A . n A 1 131 ARG 131 127 127 ARG ARG A . n A 1 132 HIS 132 128 128 HIS HIS A . n A 1 133 TYR 133 129 129 TYR TYR A . n A 1 134 ILE 134 130 130 ILE ILE A . n A 1 135 TYR 135 131 131 TYR TYR A . n A 1 136 LYS 136 132 132 LYS LYS A . n A 1 137 GLU 137 133 133 GLU GLU A . n A 1 138 GLU 138 134 134 GLU GLU A . n A 1 139 VAL 139 135 135 VAL VAL A . n A 1 140 SER 140 136 136 SER SER A . n A 1 141 LEU 141 137 137 LEU LEU A . n A 1 142 LYS 142 138 138 LYS LYS A . n A 1 143 GLU 143 139 139 GLU GLU A . n A 1 144 LEU 144 140 140 LEU LEU A . n A 1 145 ASP 145 141 141 ASP ASP A . n A 1 146 PHE 146 142 142 PHE PHE A . n A 1 147 LYS 147 143 143 LYS LYS A . n A 1 148 LEU 148 144 144 LEU LEU A . n A 1 149 ARG 149 145 145 ARG ARG A . n A 1 150 GLN 150 146 146 GLN GLN A . n A 1 151 TYR 151 147 147 TYR TYR A . n A 1 152 LEU 152 148 148 LEU LEU A . n A 1 153 ILE 153 149 149 ILE ILE A . n A 1 154 GLN 154 150 150 GLN GLN A . n A 1 155 ASN 155 151 151 ASN ASN A . n A 1 156 PHE 156 152 152 PHE PHE A . n A 1 157 ASP 157 153 153 ASP ASP A . n A 1 158 LEU 158 154 154 LEU LEU A . n A 1 159 TYR 159 155 155 TYR TYR A . n A 1 160 LYS 160 156 156 LYS LYS A . n A 1 161 LYS 161 157 157 LYS LYS A . n A 1 162 PHE 162 158 158 PHE PHE A . n A 1 163 PRO 163 159 159 PRO PRO A . n A 1 164 LYS 164 160 160 LYS LYS A . n A 1 165 ASP 165 161 161 ASP ASP A . n A 1 166 SER 166 162 162 SER SER A . n A 1 167 LYS 167 163 163 LYS LYS A . n A 1 168 ILE 168 164 164 ILE ILE A . n A 1 169 LYS 169 165 165 LYS LYS A . n A 1 170 VAL 170 166 166 VAL VAL A . n A 1 171 ILE 171 167 167 ILE ILE A . n A 1 172 MET 172 168 168 MET MET A . n A 1 173 LYS 173 169 169 LYS LYS A . n A 1 174 ASP 174 170 170 ASP ASP A . n A 1 175 GLY 175 171 171 GLY GLY A . n A 1 176 GLY 176 172 172 GLY GLY A . n A 1 177 TYR 177 173 173 TYR TYR A . n A 1 178 TYR 178 174 174 TYR TYR A . n A 1 179 THR 179 175 175 THR THR A . n A 1 180 PHE 180 176 176 PHE PHE A . n A 1 181 GLU 181 177 177 GLU GLU A . n A 1 182 LEU 182 178 178 LEU LEU A . n A 1 183 ASN 183 179 179 ASN ASN A . n A 1 184 LYS 184 180 180 LYS LYS A . n A 1 185 LYS 185 181 181 LYS LYS A . n A 1 186 LEU 186 182 182 LEU LEU A . n A 1 187 GLN 187 183 183 GLN GLN A . n A 1 188 PRO 188 184 184 PRO PRO A . n A 1 189 HIS 189 185 185 HIS HIS A . n A 1 190 ARG 190 186 186 ARG ARG A . n A 1 191 MET 191 187 187 MET MET A . n A 1 192 SER 192 188 188 SER SER A . n A 1 193 ASP 193 189 189 ASP ASP A . n A 1 194 VAL 194 190 190 VAL VAL A . n A 1 195 ILE 195 191 191 ILE ILE A . n A 1 196 ASP 196 192 192 ASP ASP A . n A 1 197 GLY 197 193 193 GLY GLY A . n A 1 198 ARG 198 194 194 ARG ARG A . n A 1 199 ASN 199 195 195 ASN ASN A . n A 1 200 ILE 200 196 196 ILE ILE A . n A 1 201 GLU 201 197 197 GLU GLU A . n A 1 202 LYS 202 198 198 LYS LYS A . n A 1 203 MET 203 199 199 MET MET A . n A 1 204 GLU 204 200 200 GLU GLU A . n A 1 205 ALA 205 201 201 ALA ALA A . n A 1 206 ASN 206 202 202 ASN ASN A . n A 1 207 ILE 207 203 203 ILE ILE A . n A 1 208 ARG 208 204 204 ARG ARG A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 PO4 1 605 1 PO4 PO4 A . D 4 GOL 1 606 1 GOL GOL A . E 5 HOH 1 607 1 HOH HOH A . E 5 HOH 2 608 2 HOH HOH A . E 5 HOH 3 609 3 HOH HOH A . E 5 HOH 4 610 4 HOH HOH A . E 5 HOH 5 611 5 HOH HOH A . E 5 HOH 6 612 6 HOH HOH A . E 5 HOH 7 613 7 HOH HOH A . E 5 HOH 8 614 8 HOH HOH A . E 5 HOH 9 615 9 HOH HOH A . E 5 HOH 10 616 10 HOH HOH A . E 5 HOH 11 617 11 HOH HOH A . E 5 HOH 12 618 12 HOH HOH A . E 5 HOH 13 619 14 HOH HOH A . E 5 HOH 14 620 15 HOH HOH A . E 5 HOH 15 621 17 HOH HOH A . E 5 HOH 16 622 18 HOH HOH A . E 5 HOH 17 623 19 HOH HOH A . E 5 HOH 18 624 20 HOH HOH A . E 5 HOH 19 625 21 HOH HOH A . E 5 HOH 20 626 22 HOH HOH A . E 5 HOH 21 627 23 HOH HOH A . E 5 HOH 22 628 24 HOH HOH A . E 5 HOH 23 629 25 HOH HOH A . E 5 HOH 24 630 26 HOH HOH A . E 5 HOH 25 631 27 HOH HOH A . E 5 HOH 26 632 29 HOH HOH A . E 5 HOH 27 633 30 HOH HOH A . E 5 HOH 28 634 32 HOH HOH A . E 5 HOH 29 635 33 HOH HOH A . E 5 HOH 30 636 34 HOH HOH A . E 5 HOH 31 637 35 HOH HOH A . E 5 HOH 32 638 36 HOH HOH A . E 5 HOH 33 639 37 HOH HOH A . E 5 HOH 34 640 38 HOH HOH A . E 5 HOH 35 641 39 HOH HOH A . E 5 HOH 36 642 40 HOH HOH A . E 5 HOH 37 643 42 HOH HOH A . E 5 HOH 38 644 43 HOH HOH A . E 5 HOH 39 645 44 HOH HOH A . E 5 HOH 40 646 46 HOH HOH A . E 5 HOH 41 647 47 HOH HOH A . E 5 HOH 42 648 48 HOH HOH A . E 5 HOH 43 649 49 HOH HOH A . E 5 HOH 44 650 51 HOH HOH A . E 5 HOH 45 651 52 HOH HOH A . E 5 HOH 46 652 53 HOH HOH A . E 5 HOH 47 653 54 HOH HOH A . E 5 HOH 48 654 55 HOH HOH A . E 5 HOH 49 655 56 HOH HOH A . E 5 HOH 50 656 57 HOH HOH A . E 5 HOH 51 657 58 HOH HOH A . E 5 HOH 52 658 59 HOH HOH A . E 5 HOH 53 659 60 HOH HOH A . E 5 HOH 54 660 61 HOH HOH A . E 5 HOH 55 661 62 HOH HOH A . E 5 HOH 56 662 63 HOH HOH A . E 5 HOH 57 663 64 HOH HOH A . E 5 HOH 58 664 65 HOH HOH A . E 5 HOH 59 665 68 HOH HOH A . E 5 HOH 60 666 69 HOH HOH A . E 5 HOH 61 667 70 HOH HOH A . E 5 HOH 62 668 71 HOH HOH A . E 5 HOH 63 669 72 HOH HOH A . E 5 HOH 64 670 73 HOH HOH A . E 5 HOH 65 671 74 HOH HOH A . E 5 HOH 66 672 75 HOH HOH A . E 5 HOH 67 673 76 HOH HOH A . E 5 HOH 68 674 77 HOH HOH A . E 5 HOH 69 675 78 HOH HOH A . E 5 HOH 70 676 80 HOH HOH A . E 5 HOH 71 677 81 HOH HOH A . E 5 HOH 72 678 82 HOH HOH A . E 5 HOH 73 679 83 HOH HOH A . E 5 HOH 74 680 84 HOH HOH A . E 5 HOH 75 681 85 HOH HOH A . E 5 HOH 76 682 86 HOH HOH A . E 5 HOH 77 683 87 HOH HOH A . E 5 HOH 78 684 88 HOH HOH A . E 5 HOH 79 685 89 HOH HOH A . E 5 HOH 80 686 90 HOH HOH A . E 5 HOH 81 687 91 HOH HOH A . E 5 HOH 82 688 92 HOH HOH A . E 5 HOH 83 689 93 HOH HOH A . E 5 HOH 84 690 94 HOH HOH A . E 5 HOH 85 691 96 HOH HOH A . E 5 HOH 86 692 97 HOH HOH A . E 5 HOH 87 693 98 HOH HOH A . E 5 HOH 88 694 101 HOH HOH A . E 5 HOH 89 695 103 HOH HOH A . E 5 HOH 90 696 105 HOH HOH A . E 5 HOH 91 697 106 HOH HOH A . E 5 HOH 92 698 107 HOH HOH A . E 5 HOH 93 699 108 HOH HOH A . E 5 HOH 94 700 109 HOH HOH A . E 5 HOH 95 701 110 HOH HOH A . E 5 HOH 96 702 111 HOH HOH A . E 5 HOH 97 703 112 HOH HOH A . E 5 HOH 98 704 114 HOH HOH A . E 5 HOH 99 705 115 HOH HOH A . E 5 HOH 100 706 118 HOH HOH A . E 5 HOH 101 707 119 HOH HOH A . E 5 HOH 102 708 120 HOH HOH A . E 5 HOH 103 709 122 HOH HOH A . E 5 HOH 104 710 124 HOH HOH A . E 5 HOH 105 711 127 HOH HOH A . E 5 HOH 106 712 128 HOH HOH A . E 5 HOH 107 713 129 HOH HOH A . E 5 HOH 108 714 130 HOH HOH A . E 5 HOH 109 715 131 HOH HOH A . E 5 HOH 110 716 132 HOH HOH A . E 5 HOH 111 717 137 HOH HOH A . # _pdbx_molecule_features.prd_id PRD_900121 _pdbx_molecule_features.name 'Sialyl-Lewis X antigen, beta anomer' _pdbx_molecule_features.type Oligosaccharide _pdbx_molecule_features.class Antigen _pdbx_molecule_features.details 'oligosaccharide with branches' # _pdbx_molecule.instance_id 1 _pdbx_molecule.prd_id PRD_900121 _pdbx_molecule.asym_id B # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2007-11-27 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 2 0 2020-07-29 4 'Structure model' 2 1 2023-11-01 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 3 'Structure model' repository Remediation 'Carbohydrate remediation' ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' Advisory 2 2 'Structure model' 'Version format compliance' 3 3 'Structure model' 'Atomic model' 4 3 'Structure model' 'Data collection' 5 3 'Structure model' 'Database references' 6 3 'Structure model' 'Derived calculations' 7 3 'Structure model' 'Structure summary' 8 4 'Structure model' 'Data collection' 9 4 'Structure model' 'Database references' 10 4 'Structure model' 'Refinement description' 11 4 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' atom_site 2 3 'Structure model' chem_comp 3 3 'Structure model' entity 4 3 'Structure model' entity_name_com 5 3 'Structure model' pdbx_branch_scheme 6 3 'Structure model' pdbx_chem_comp_identifier 7 3 'Structure model' pdbx_entity_branch 8 3 'Structure model' pdbx_entity_branch_descriptor 9 3 'Structure model' pdbx_entity_branch_link 10 3 'Structure model' pdbx_entity_branch_list 11 3 'Structure model' pdbx_entity_nonpoly 12 3 'Structure model' pdbx_molecule_features 13 3 'Structure model' pdbx_nonpoly_scheme 14 3 'Structure model' pdbx_struct_assembly_gen 15 3 'Structure model' struct_asym 16 3 'Structure model' struct_conn 17 3 'Structure model' struct_ref_seq_dif 18 3 'Structure model' struct_site 19 3 'Structure model' struct_site_gen 20 4 'Structure model' chem_comp 21 4 'Structure model' chem_comp_atom 22 4 'Structure model' chem_comp_bond 23 4 'Structure model' database_2 24 4 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_atom_site.B_iso_or_equiv' 2 3 'Structure model' '_atom_site.Cartn_x' 3 3 'Structure model' '_atom_site.Cartn_y' 4 3 'Structure model' '_atom_site.Cartn_z' 5 3 'Structure model' '_atom_site.auth_asym_id' 6 3 'Structure model' '_atom_site.auth_atom_id' 7 3 'Structure model' '_atom_site.auth_comp_id' 8 3 'Structure model' '_atom_site.auth_seq_id' 9 3 'Structure model' '_atom_site.label_asym_id' 10 3 'Structure model' '_atom_site.label_atom_id' 11 3 'Structure model' '_atom_site.label_comp_id' 12 3 'Structure model' '_atom_site.label_entity_id' 13 3 'Structure model' '_atom_site.type_symbol' 14 3 'Structure model' '_chem_comp.name' 15 3 'Structure model' '_chem_comp.type' 16 3 'Structure model' '_pdbx_struct_assembly_gen.asym_id_list' 17 3 'Structure model' '_struct_conn.pdbx_dist_value' 18 3 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 19 3 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 20 3 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 21 3 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 22 3 'Structure model' '_struct_conn.ptnr1_label_asym_id' 23 3 'Structure model' '_struct_conn.ptnr1_label_atom_id' 24 3 'Structure model' '_struct_conn.ptnr1_label_comp_id' 25 3 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 26 3 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 27 3 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 28 3 'Structure model' '_struct_conn.ptnr2_label_asym_id' 29 3 'Structure model' '_struct_conn.ptnr2_label_atom_id' 30 3 'Structure model' '_struct_conn.ptnr2_label_comp_id' 31 3 'Structure model' '_struct_ref_seq_dif.details' 32 4 'Structure model' '_chem_comp.pdbx_synonyms' 33 4 'Structure model' '_database_2.pdbx_DOI' 34 4 'Structure model' '_database_2.pdbx_database_accession' # _diffrn_reflns.diffrn_id 1 _diffrn_reflns.pdbx_d_res_high 1.650 _diffrn_reflns.pdbx_d_res_low 30.042 _diffrn_reflns.pdbx_number_obs 30728 _diffrn_reflns.pdbx_Rmerge_I_obs 0.051 _diffrn_reflns.pdbx_Rsym_value 0.051 _diffrn_reflns.pdbx_chi_squared ? _diffrn_reflns.av_sigmaI_over_netI 5.00 _diffrn_reflns.pdbx_redundancy 7.40 _diffrn_reflns.pdbx_percent_possible_obs 99.80 _diffrn_reflns.number 227633 _diffrn_reflns.pdbx_observed_criterion ? _diffrn_reflns.limit_h_max ? _diffrn_reflns.limit_h_min ? _diffrn_reflns.limit_k_max ? _diffrn_reflns.limit_k_min ? _diffrn_reflns.limit_l_max ? _diffrn_reflns.limit_l_min ? # loop_ _pdbx_diffrn_reflns_shell.diffrn_id _pdbx_diffrn_reflns_shell.d_res_high _pdbx_diffrn_reflns_shell.d_res_low _pdbx_diffrn_reflns_shell.number_obs _pdbx_diffrn_reflns_shell.rejects _pdbx_diffrn_reflns_shell.Rmerge_I_obs _pdbx_diffrn_reflns_shell.Rsym_value _pdbx_diffrn_reflns_shell.chi_squared _pdbx_diffrn_reflns_shell.redundancy _pdbx_diffrn_reflns_shell.percent_possible_obs 1 1.65 1.74 ? ? 0.667 0.667 ? 7.40 100.00 1 1.74 1.84 ? ? 0.338 0.338 ? 7.40 100.00 1 1.84 1.97 ? ? 0.175 0.175 ? 7.40 100.00 1 1.97 2.13 ? ? 0.103 0.103 ? 7.40 100.00 1 2.13 2.33 ? ? 0.071 0.071 ? 7.40 100.00 1 2.33 2.61 ? ? 0.056 0.056 ? 7.50 100.00 1 2.61 3.01 ? ? 0.047 0.047 ? 7.50 100.00 1 3.01 3.69 ? ? 0.045 0.045 ? 7.50 100.00 1 3.69 5.22 ? ? 0.045 0.045 ? 7.30 99.20 1 5.22 44.15 ? ? 0.037 0.037 ? 7.10 95.60 # loop_ _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.pdbx_refine_id 1 ? refined -0.6150 11.6900 2.8810 0.1852 0.1463 0.1012 -0.0058 0.0097 -0.0234 0.8082 6.4989 1.4790 -0.0623 -0.2962 1.6810 -0.0086 0.0893 -0.0807 0.2457 -0.1155 -0.2822 -0.7340 -0.1177 0.0022 'X-RAY DIFFRACTION' 2 ? refined -7.7650 15.1180 12.6640 0.1248 0.1159 0.1374 -0.0040 -0.0187 -0.0121 1.0639 2.8129 0.6341 0.0898 -0.1361 0.2129 -0.0163 0.0547 -0.0384 0.1064 -0.0406 0.0099 -0.2766 -0.0023 0.0358 'X-RAY DIFFRACTION' 3 ? refined -5.9780 23.1560 17.3550 0.1346 0.1072 0.1084 0.0049 -0.0068 -0.0035 1.8852 3.1737 1.0738 0.4755 -0.3913 0.3621 0.1307 -0.0729 -0.0578 -0.0771 0.0597 0.1363 0.0278 -0.1488 0.0322 'X-RAY DIFFRACTION' # loop_ _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.selection_details 1 1 A 17 A 64 ? A 13 A 60 'X-RAY DIFFRACTION' ? 2 2 A 65 A 129 ? A 61 A 125 'X-RAY DIFFRACTION' ? 3 3 A 130 A 208 ? A 126 A 204 'X-RAY DIFFRACTION' ? # _pdbx_phasing_MR.entry_id 2Z8L _pdbx_phasing_MR.method_rotation ? _pdbx_phasing_MR.method_translation ? _pdbx_phasing_MR.model_details 'Phaser MODE: MR_AUTO' _pdbx_phasing_MR.R_factor ? _pdbx_phasing_MR.R_rigid_body ? _pdbx_phasing_MR.correlation_coeff_Fo_to_Fc ? _pdbx_phasing_MR.correlation_coeff_Io_to_Ic ? _pdbx_phasing_MR.d_res_high_rotation 2.500 _pdbx_phasing_MR.d_res_low_rotation 33.780 _pdbx_phasing_MR.d_res_high_translation 1.700 _pdbx_phasing_MR.d_res_low_translation 33.780 _pdbx_phasing_MR.packing ? _pdbx_phasing_MR.reflns_percent_rotation ? _pdbx_phasing_MR.reflns_percent_translation ? _pdbx_phasing_MR.sigma_F_rotation ? _pdbx_phasing_MR.sigma_F_translation ? _pdbx_phasing_MR.sigma_I_rotation ? _pdbx_phasing_MR.sigma_I_translation ? # _phasing.method MR # loop_ _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id _software.pdbx_ordinal MOSFLM . ? package 'A.G.W. Leslie' andrew@mrc-lmb.cam.ac.uk 'data reduction' http://www.mrc-lmb.cam.ac.uk/harry/mosflm/ ? ? 1 PHASER . ? other 'R. J. Read' cimr-phaser@lists.cam.ac.uk phasing http://www-structmed.cimr.cam.ac.uk/phaser/ ? ? 2 REFMAC 5.3.0037 ? program 'Murshudov, G.N.' ccp4@dl.ac.uk refinement http://www.ccp4.ac.uk/main.html Fortran_77 ? 3 PDB_EXTRACT 3.000 'July 2, 2007' package PDB sw-help@rcsb.rutgers.edu 'data extraction' http://pdb.rutgers.edu/software/ C++ ? 4 HKL-2000 . ? ? ? ? 'data collection' ? ? ? 5 SCALA . ? ? ? ? 'data scaling' ? ? ? 6 # _pdbx_entry_details.entry_id 2Z8L _pdbx_entry_details.nonpolymer_details ;THE TETRASACCHARIDE SIALYL-LEWIS X IS PRESENT AS A LIGAND IN THIS STRUCTURE AND IS NOT COVALENTLY BOUND TO THE PROTEIN MOLECULE. ; _pdbx_entry_details.sequence_details ;THE CONFLICTS BETWEEN THE SEQUENCE FOR THIS STRUCTURE AND THE DATABASE SEQUENCE ARISE FROM THE ALLELIC VARIATION BETWEEN STAPHYLOCOCCUS AUREUS STRAINS SEEN FOR SOME OF THESE SUPERANTIGEN-LIKE PROTEINS. ; _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.has_ligand_of_interest ? # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 CB _pdbx_validate_rmsd_angle.auth_asym_id_1 A _pdbx_validate_rmsd_angle.auth_comp_id_1 ILE _pdbx_validate_rmsd_angle.auth_seq_id_1 203 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 CA _pdbx_validate_rmsd_angle.auth_asym_id_2 A _pdbx_validate_rmsd_angle.auth_comp_id_2 ILE _pdbx_validate_rmsd_angle.auth_seq_id_2 203 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 C _pdbx_validate_rmsd_angle.auth_asym_id_3 A _pdbx_validate_rmsd_angle.auth_comp_id_3 ILE _pdbx_validate_rmsd_angle.auth_seq_id_3 203 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 99.57 _pdbx_validate_rmsd_angle.angle_target_value 111.60 _pdbx_validate_rmsd_angle.angle_deviation -12.03 _pdbx_validate_rmsd_angle.angle_standard_deviation 2.00 _pdbx_validate_rmsd_angle.linker_flag N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ALA A 119 ? ? 81.39 11.01 2 1 LYS A 160 ? ? 49.03 -126.11 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A LYS 41 ? CG ? A LYS 45 CG 2 1 Y 1 A LYS 41 ? CD ? A LYS 45 CD 3 1 Y 1 A LYS 41 ? CE ? A LYS 45 CE 4 1 Y 1 A LYS 41 ? NZ ? A LYS 45 NZ # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY -3 ? A GLY 1 2 1 Y 1 A PRO -2 ? A PRO 2 3 1 Y 1 A GLY -1 ? A GLY 3 4 1 Y 1 A SER 0 ? A SER 4 5 1 Y 1 A SER 1 ? A SER 5 6 1 Y 1 A GLU 2 ? A GLU 6 7 1 Y 1 A HIS 3 ? A HIS 7 8 1 Y 1 A LYS 4 ? A LYS 8 9 1 Y 1 A ALA 5 ? A ALA 9 10 1 Y 1 A LYS 6 ? A LYS 10 11 1 Y 1 A TYR 7 ? A TYR 11 12 1 Y 1 A GLU 8 ? A GLU 12 13 1 Y 1 A ASN 9 ? A ASN 13 14 1 Y 1 A VAL 10 ? A VAL 14 15 1 Y 1 A THR 11 ? A THR 15 16 1 Y 1 A LYS 12 ? A LYS 16 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 FUC C1 C N R 74 FUC C2 C N S 75 FUC C3 C N R 76 FUC C4 C N S 77 FUC C5 C N S 78 FUC C6 C N N 79 FUC O1 O N N 80 FUC O2 O N N 81 FUC O3 O N N 82 FUC O4 O N N 83 FUC O5 O N N 84 FUC H1 H N N 85 FUC H2 H N N 86 FUC H3 H N N 87 FUC H4 H N N 88 FUC H5 H N N 89 FUC H61 H N N 90 FUC H62 H N N 91 FUC H63 H N N 92 FUC HO1 H N N 93 FUC HO2 H N N 94 FUC HO3 H N N 95 FUC HO4 H N N 96 GAL C1 C N R 97 GAL C2 C N R 98 GAL C3 C N S 99 GAL C4 C N R 100 GAL C5 C N R 101 GAL C6 C N N 102 GAL O1 O N N 103 GAL O2 O N N 104 GAL O3 O N N 105 GAL O4 O N N 106 GAL O5 O N N 107 GAL O6 O N N 108 GAL H1 H N N 109 GAL H2 H N N 110 GAL H3 H N N 111 GAL H4 H N N 112 GAL H5 H N N 113 GAL H61 H N N 114 GAL H62 H N N 115 GAL HO1 H N N 116 GAL HO2 H N N 117 GAL HO3 H N N 118 GAL HO4 H N N 119 GAL HO6 H N N 120 GLN N N N N 121 GLN CA C N S 122 GLN C C N N 123 GLN O O N N 124 GLN CB C N N 125 GLN CG C N N 126 GLN CD C N N 127 GLN OE1 O N N 128 GLN NE2 N N N 129 GLN OXT O N N 130 GLN H H N N 131 GLN H2 H N N 132 GLN HA H N N 133 GLN HB2 H N N 134 GLN HB3 H N N 135 GLN HG2 H N N 136 GLN HG3 H N N 137 GLN HE21 H N N 138 GLN HE22 H N N 139 GLN HXT H N N 140 GLU N N N N 141 GLU CA C N S 142 GLU C C N N 143 GLU O O N N 144 GLU CB C N N 145 GLU CG C N N 146 GLU CD C N N 147 GLU OE1 O N N 148 GLU OE2 O N N 149 GLU OXT O N N 150 GLU H H N N 151 GLU H2 H N N 152 GLU HA H N N 153 GLU HB2 H N N 154 GLU HB3 H N N 155 GLU HG2 H N N 156 GLU HG3 H N N 157 GLU HE2 H N N 158 GLU HXT H N N 159 GLY N N N N 160 GLY CA C N N 161 GLY C C N N 162 GLY O O N N 163 GLY OXT O N N 164 GLY H H N N 165 GLY H2 H N N 166 GLY HA2 H N N 167 GLY HA3 H N N 168 GLY HXT H N N 169 GOL C1 C N N 170 GOL O1 O N N 171 GOL C2 C N N 172 GOL O2 O N N 173 GOL C3 C N N 174 GOL O3 O N N 175 GOL H11 H N N 176 GOL H12 H N N 177 GOL HO1 H N N 178 GOL H2 H N N 179 GOL HO2 H N N 180 GOL H31 H N N 181 GOL H32 H N N 182 GOL HO3 H N N 183 HIS N N N N 184 HIS CA C N S 185 HIS C C N N 186 HIS O O N N 187 HIS CB C N N 188 HIS CG C Y N 189 HIS ND1 N Y N 190 HIS CD2 C Y N 191 HIS CE1 C Y N 192 HIS NE2 N Y N 193 HIS OXT O N N 194 HIS H H N N 195 HIS H2 H N N 196 HIS HA H N N 197 HIS HB2 H N N 198 HIS HB3 H N N 199 HIS HD1 H N N 200 HIS HD2 H N N 201 HIS HE1 H N N 202 HIS HE2 H N N 203 HIS HXT H N N 204 HOH O O N N 205 HOH H1 H N N 206 HOH H2 H N N 207 ILE N N N N 208 ILE CA C N S 209 ILE C C N N 210 ILE O O N N 211 ILE CB C N S 212 ILE CG1 C N N 213 ILE CG2 C N N 214 ILE CD1 C N N 215 ILE OXT O N N 216 ILE H H N N 217 ILE H2 H N N 218 ILE HA H N N 219 ILE HB H N N 220 ILE HG12 H N N 221 ILE HG13 H N N 222 ILE HG21 H N N 223 ILE HG22 H N N 224 ILE HG23 H N N 225 ILE HD11 H N N 226 ILE HD12 H N N 227 ILE HD13 H N N 228 ILE HXT H N N 229 LEU N N N N 230 LEU CA C N S 231 LEU C C N N 232 LEU O O N N 233 LEU CB C N N 234 LEU CG C N N 235 LEU CD1 C N N 236 LEU CD2 C N N 237 LEU OXT O N N 238 LEU H H N N 239 LEU H2 H N N 240 LEU HA H N N 241 LEU HB2 H N N 242 LEU HB3 H N N 243 LEU HG H N N 244 LEU HD11 H N N 245 LEU HD12 H N N 246 LEU HD13 H N N 247 LEU HD21 H N N 248 LEU HD22 H N N 249 LEU HD23 H N N 250 LEU HXT H N N 251 LYS N N N N 252 LYS CA C N S 253 LYS C C N N 254 LYS O O N N 255 LYS CB C N N 256 LYS CG C N N 257 LYS CD C N N 258 LYS CE C N N 259 LYS NZ N N N 260 LYS OXT O N N 261 LYS H H N N 262 LYS H2 H N N 263 LYS HA H N N 264 LYS HB2 H N N 265 LYS HB3 H N N 266 LYS HG2 H N N 267 LYS HG3 H N N 268 LYS HD2 H N N 269 LYS HD3 H N N 270 LYS HE2 H N N 271 LYS HE3 H N N 272 LYS HZ1 H N N 273 LYS HZ2 H N N 274 LYS HZ3 H N N 275 LYS HXT H N N 276 MET N N N N 277 MET CA C N S 278 MET C C N N 279 MET O O N N 280 MET CB C N N 281 MET CG C N N 282 MET SD S N N 283 MET CE C N N 284 MET OXT O N N 285 MET H H N N 286 MET H2 H N N 287 MET HA H N N 288 MET HB2 H N N 289 MET HB3 H N N 290 MET HG2 H N N 291 MET HG3 H N N 292 MET HE1 H N N 293 MET HE2 H N N 294 MET HE3 H N N 295 MET HXT H N N 296 NAG C1 C N R 297 NAG C2 C N R 298 NAG C3 C N R 299 NAG C4 C N S 300 NAG C5 C N R 301 NAG C6 C N N 302 NAG C7 C N N 303 NAG C8 C N N 304 NAG N2 N N N 305 NAG O1 O N N 306 NAG O3 O N N 307 NAG O4 O N N 308 NAG O5 O N N 309 NAG O6 O N N 310 NAG O7 O N N 311 NAG H1 H N N 312 NAG H2 H N N 313 NAG H3 H N N 314 NAG H4 H N N 315 NAG H5 H N N 316 NAG H61 H N N 317 NAG H62 H N N 318 NAG H81 H N N 319 NAG H82 H N N 320 NAG H83 H N N 321 NAG HN2 H N N 322 NAG HO1 H N N 323 NAG HO3 H N N 324 NAG HO4 H N N 325 NAG HO6 H N N 326 PHE N N N N 327 PHE CA C N S 328 PHE C C N N 329 PHE O O N N 330 PHE CB C N N 331 PHE CG C Y N 332 PHE CD1 C Y N 333 PHE CD2 C Y N 334 PHE CE1 C Y N 335 PHE CE2 C Y N 336 PHE CZ C Y N 337 PHE OXT O N N 338 PHE H H N N 339 PHE H2 H N N 340 PHE HA H N N 341 PHE HB2 H N N 342 PHE HB3 H N N 343 PHE HD1 H N N 344 PHE HD2 H N N 345 PHE HE1 H N N 346 PHE HE2 H N N 347 PHE HZ H N N 348 PHE HXT H N N 349 PO4 P P N N 350 PO4 O1 O N N 351 PO4 O2 O N N 352 PO4 O3 O N N 353 PO4 O4 O N N 354 PRO N N N N 355 PRO CA C N S 356 PRO C C N N 357 PRO O O N N 358 PRO CB C N N 359 PRO CG C N N 360 PRO CD C N N 361 PRO OXT O N N 362 PRO H H N N 363 PRO HA H N N 364 PRO HB2 H N N 365 PRO HB3 H N N 366 PRO HG2 H N N 367 PRO HG3 H N N 368 PRO HD2 H N N 369 PRO HD3 H N N 370 PRO HXT H N N 371 SER N N N N 372 SER CA C N S 373 SER C C N N 374 SER O O N N 375 SER CB C N N 376 SER OG O N N 377 SER OXT O N N 378 SER H H N N 379 SER H2 H N N 380 SER HA H N N 381 SER HB2 H N N 382 SER HB3 H N N 383 SER HG H N N 384 SER HXT H N N 385 SIA C1 C N N 386 SIA C2 C N R 387 SIA C3 C N N 388 SIA C4 C N S 389 SIA C5 C N R 390 SIA C6 C N R 391 SIA C7 C N R 392 SIA C8 C N R 393 SIA C9 C N N 394 SIA C10 C N N 395 SIA C11 C N N 396 SIA N5 N N N 397 SIA O1A O N N 398 SIA O1B O N N 399 SIA O2 O N N 400 SIA O4 O N N 401 SIA O6 O N N 402 SIA O7 O N N 403 SIA O8 O N N 404 SIA O9 O N N 405 SIA O10 O N N 406 SIA H32 H N N 407 SIA H31 H N N 408 SIA H4 H N N 409 SIA H5 H N N 410 SIA H6 H N N 411 SIA H7 H N N 412 SIA H8 H N N 413 SIA H92 H N N 414 SIA H91 H N N 415 SIA H111 H N N 416 SIA H113 H N N 417 SIA H112 H N N 418 SIA HN5 H N N 419 SIA HO1B H N N 420 SIA HO2 H N N 421 SIA HO4 H N N 422 SIA HO7 H N N 423 SIA HO8 H N N 424 SIA HO9 H N N 425 THR N N N N 426 THR CA C N S 427 THR C C N N 428 THR O O N N 429 THR CB C N R 430 THR OG1 O N N 431 THR CG2 C N N 432 THR OXT O N N 433 THR H H N N 434 THR H2 H N N 435 THR HA H N N 436 THR HB H N N 437 THR HG1 H N N 438 THR HG21 H N N 439 THR HG22 H N N 440 THR HG23 H N N 441 THR HXT H N N 442 TYR N N N N 443 TYR CA C N S 444 TYR C C N N 445 TYR O O N N 446 TYR CB C N N 447 TYR CG C Y N 448 TYR CD1 C Y N 449 TYR CD2 C Y N 450 TYR CE1 C Y N 451 TYR CE2 C Y N 452 TYR CZ C Y N 453 TYR OH O N N 454 TYR OXT O N N 455 TYR H H N N 456 TYR H2 H N N 457 TYR HA H N N 458 TYR HB2 H N N 459 TYR HB3 H N N 460 TYR HD1 H N N 461 TYR HD2 H N N 462 TYR HE1 H N N 463 TYR HE2 H N N 464 TYR HH H N N 465 TYR HXT H N N 466 VAL N N N N 467 VAL CA C N S 468 VAL C C N N 469 VAL O O N N 470 VAL CB C N N 471 VAL CG1 C N N 472 VAL CG2 C N N 473 VAL OXT O N N 474 VAL H H N N 475 VAL H2 H N N 476 VAL HA H N N 477 VAL HB H N N 478 VAL HG11 H N N 479 VAL HG12 H N N 480 VAL HG13 H N N 481 VAL HG21 H N N 482 VAL HG22 H N N 483 VAL HG23 H N N 484 VAL HXT H N N 485 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 FUC C1 C2 sing N N 70 FUC C1 O1 sing N N 71 FUC C1 O5 sing N N 72 FUC C1 H1 sing N N 73 FUC C2 C3 sing N N 74 FUC C2 O2 sing N N 75 FUC C2 H2 sing N N 76 FUC C3 C4 sing N N 77 FUC C3 O3 sing N N 78 FUC C3 H3 sing N N 79 FUC C4 C5 sing N N 80 FUC C4 O4 sing N N 81 FUC C4 H4 sing N N 82 FUC C5 C6 sing N N 83 FUC C5 O5 sing N N 84 FUC C5 H5 sing N N 85 FUC C6 H61 sing N N 86 FUC C6 H62 sing N N 87 FUC C6 H63 sing N N 88 FUC O1 HO1 sing N N 89 FUC O2 HO2 sing N N 90 FUC O3 HO3 sing N N 91 FUC O4 HO4 sing N N 92 GAL C1 C2 sing N N 93 GAL C1 O1 sing N N 94 GAL C1 O5 sing N N 95 GAL C1 H1 sing N N 96 GAL C2 C3 sing N N 97 GAL C2 O2 sing N N 98 GAL C2 H2 sing N N 99 GAL C3 C4 sing N N 100 GAL C3 O3 sing N N 101 GAL C3 H3 sing N N 102 GAL C4 C5 sing N N 103 GAL C4 O4 sing N N 104 GAL C4 H4 sing N N 105 GAL C5 C6 sing N N 106 GAL C5 O5 sing N N 107 GAL C5 H5 sing N N 108 GAL C6 O6 sing N N 109 GAL C6 H61 sing N N 110 GAL C6 H62 sing N N 111 GAL O1 HO1 sing N N 112 GAL O2 HO2 sing N N 113 GAL O3 HO3 sing N N 114 GAL O4 HO4 sing N N 115 GAL O6 HO6 sing N N 116 GLN N CA sing N N 117 GLN N H sing N N 118 GLN N H2 sing N N 119 GLN CA C sing N N 120 GLN CA CB sing N N 121 GLN CA HA sing N N 122 GLN C O doub N N 123 GLN C OXT sing N N 124 GLN CB CG sing N N 125 GLN CB HB2 sing N N 126 GLN CB HB3 sing N N 127 GLN CG CD sing N N 128 GLN CG HG2 sing N N 129 GLN CG HG3 sing N N 130 GLN CD OE1 doub N N 131 GLN CD NE2 sing N N 132 GLN NE2 HE21 sing N N 133 GLN NE2 HE22 sing N N 134 GLN OXT HXT sing N N 135 GLU N CA sing N N 136 GLU N H sing N N 137 GLU N H2 sing N N 138 GLU CA C sing N N 139 GLU CA CB sing N N 140 GLU CA HA sing N N 141 GLU C O doub N N 142 GLU C OXT sing N N 143 GLU CB CG sing N N 144 GLU CB HB2 sing N N 145 GLU CB HB3 sing N N 146 GLU CG CD sing N N 147 GLU CG HG2 sing N N 148 GLU CG HG3 sing N N 149 GLU CD OE1 doub N N 150 GLU CD OE2 sing N N 151 GLU OE2 HE2 sing N N 152 GLU OXT HXT sing N N 153 GLY N CA sing N N 154 GLY N H sing N N 155 GLY N H2 sing N N 156 GLY CA C sing N N 157 GLY CA HA2 sing N N 158 GLY CA HA3 sing N N 159 GLY C O doub N N 160 GLY C OXT sing N N 161 GLY OXT HXT sing N N 162 GOL C1 O1 sing N N 163 GOL C1 C2 sing N N 164 GOL C1 H11 sing N N 165 GOL C1 H12 sing N N 166 GOL O1 HO1 sing N N 167 GOL C2 O2 sing N N 168 GOL C2 C3 sing N N 169 GOL C2 H2 sing N N 170 GOL O2 HO2 sing N N 171 GOL C3 O3 sing N N 172 GOL C3 H31 sing N N 173 GOL C3 H32 sing N N 174 GOL O3 HO3 sing N N 175 HIS N CA sing N N 176 HIS N H sing N N 177 HIS N H2 sing N N 178 HIS CA C sing N N 179 HIS CA CB sing N N 180 HIS CA HA sing N N 181 HIS C O doub N N 182 HIS C OXT sing N N 183 HIS CB CG sing N N 184 HIS CB HB2 sing N N 185 HIS CB HB3 sing N N 186 HIS CG ND1 sing Y N 187 HIS CG CD2 doub Y N 188 HIS ND1 CE1 doub Y N 189 HIS ND1 HD1 sing N N 190 HIS CD2 NE2 sing Y N 191 HIS CD2 HD2 sing N N 192 HIS CE1 NE2 sing Y N 193 HIS CE1 HE1 sing N N 194 HIS NE2 HE2 sing N N 195 HIS OXT HXT sing N N 196 HOH O H1 sing N N 197 HOH O H2 sing N N 198 ILE N CA sing N N 199 ILE N H sing N N 200 ILE N H2 sing N N 201 ILE CA C sing N N 202 ILE CA CB sing N N 203 ILE CA HA sing N N 204 ILE C O doub N N 205 ILE C OXT sing N N 206 ILE CB CG1 sing N N 207 ILE CB CG2 sing N N 208 ILE CB HB sing N N 209 ILE CG1 CD1 sing N N 210 ILE CG1 HG12 sing N N 211 ILE CG1 HG13 sing N N 212 ILE CG2 HG21 sing N N 213 ILE CG2 HG22 sing N N 214 ILE CG2 HG23 sing N N 215 ILE CD1 HD11 sing N N 216 ILE CD1 HD12 sing N N 217 ILE CD1 HD13 sing N N 218 ILE OXT HXT sing N N 219 LEU N CA sing N N 220 LEU N H sing N N 221 LEU N H2 sing N N 222 LEU CA C sing N N 223 LEU CA CB sing N N 224 LEU CA HA sing N N 225 LEU C O doub N N 226 LEU C OXT sing N N 227 LEU CB CG sing N N 228 LEU CB HB2 sing N N 229 LEU CB HB3 sing N N 230 LEU CG CD1 sing N N 231 LEU CG CD2 sing N N 232 LEU CG HG sing N N 233 LEU CD1 HD11 sing N N 234 LEU CD1 HD12 sing N N 235 LEU CD1 HD13 sing N N 236 LEU CD2 HD21 sing N N 237 LEU CD2 HD22 sing N N 238 LEU CD2 HD23 sing N N 239 LEU OXT HXT sing N N 240 LYS N CA sing N N 241 LYS N H sing N N 242 LYS N H2 sing N N 243 LYS CA C sing N N 244 LYS CA CB sing N N 245 LYS CA HA sing N N 246 LYS C O doub N N 247 LYS C OXT sing N N 248 LYS CB CG sing N N 249 LYS CB HB2 sing N N 250 LYS CB HB3 sing N N 251 LYS CG CD sing N N 252 LYS CG HG2 sing N N 253 LYS CG HG3 sing N N 254 LYS CD CE sing N N 255 LYS CD HD2 sing N N 256 LYS CD HD3 sing N N 257 LYS CE NZ sing N N 258 LYS CE HE2 sing N N 259 LYS CE HE3 sing N N 260 LYS NZ HZ1 sing N N 261 LYS NZ HZ2 sing N N 262 LYS NZ HZ3 sing N N 263 LYS OXT HXT sing N N 264 MET N CA sing N N 265 MET N H sing N N 266 MET N H2 sing N N 267 MET CA C sing N N 268 MET CA CB sing N N 269 MET CA HA sing N N 270 MET C O doub N N 271 MET C OXT sing N N 272 MET CB CG sing N N 273 MET CB HB2 sing N N 274 MET CB HB3 sing N N 275 MET CG SD sing N N 276 MET CG HG2 sing N N 277 MET CG HG3 sing N N 278 MET SD CE sing N N 279 MET CE HE1 sing N N 280 MET CE HE2 sing N N 281 MET CE HE3 sing N N 282 MET OXT HXT sing N N 283 NAG C1 C2 sing N N 284 NAG C1 O1 sing N N 285 NAG C1 O5 sing N N 286 NAG C1 H1 sing N N 287 NAG C2 C3 sing N N 288 NAG C2 N2 sing N N 289 NAG C2 H2 sing N N 290 NAG C3 C4 sing N N 291 NAG C3 O3 sing N N 292 NAG C3 H3 sing N N 293 NAG C4 C5 sing N N 294 NAG C4 O4 sing N N 295 NAG C4 H4 sing N N 296 NAG C5 C6 sing N N 297 NAG C5 O5 sing N N 298 NAG C5 H5 sing N N 299 NAG C6 O6 sing N N 300 NAG C6 H61 sing N N 301 NAG C6 H62 sing N N 302 NAG C7 C8 sing N N 303 NAG C7 N2 sing N N 304 NAG C7 O7 doub N N 305 NAG C8 H81 sing N N 306 NAG C8 H82 sing N N 307 NAG C8 H83 sing N N 308 NAG N2 HN2 sing N N 309 NAG O1 HO1 sing N N 310 NAG O3 HO3 sing N N 311 NAG O4 HO4 sing N N 312 NAG O6 HO6 sing N N 313 PHE N CA sing N N 314 PHE N H sing N N 315 PHE N H2 sing N N 316 PHE CA C sing N N 317 PHE CA CB sing N N 318 PHE CA HA sing N N 319 PHE C O doub N N 320 PHE C OXT sing N N 321 PHE CB CG sing N N 322 PHE CB HB2 sing N N 323 PHE CB HB3 sing N N 324 PHE CG CD1 doub Y N 325 PHE CG CD2 sing Y N 326 PHE CD1 CE1 sing Y N 327 PHE CD1 HD1 sing N N 328 PHE CD2 CE2 doub Y N 329 PHE CD2 HD2 sing N N 330 PHE CE1 CZ doub Y N 331 PHE CE1 HE1 sing N N 332 PHE CE2 CZ sing Y N 333 PHE CE2 HE2 sing N N 334 PHE CZ HZ sing N N 335 PHE OXT HXT sing N N 336 PO4 P O1 doub N N 337 PO4 P O2 sing N N 338 PO4 P O3 sing N N 339 PO4 P O4 sing N N 340 PRO N CA sing N N 341 PRO N CD sing N N 342 PRO N H sing N N 343 PRO CA C sing N N 344 PRO CA CB sing N N 345 PRO CA HA sing N N 346 PRO C O doub N N 347 PRO C OXT sing N N 348 PRO CB CG sing N N 349 PRO CB HB2 sing N N 350 PRO CB HB3 sing N N 351 PRO CG CD sing N N 352 PRO CG HG2 sing N N 353 PRO CG HG3 sing N N 354 PRO CD HD2 sing N N 355 PRO CD HD3 sing N N 356 PRO OXT HXT sing N N 357 SER N CA sing N N 358 SER N H sing N N 359 SER N H2 sing N N 360 SER CA C sing N N 361 SER CA CB sing N N 362 SER CA HA sing N N 363 SER C O doub N N 364 SER C OXT sing N N 365 SER CB OG sing N N 366 SER CB HB2 sing N N 367 SER CB HB3 sing N N 368 SER OG HG sing N N 369 SER OXT HXT sing N N 370 SIA C1 C2 sing N N 371 SIA C1 O1A doub N N 372 SIA C1 O1B sing N N 373 SIA C2 C3 sing N N 374 SIA C2 O2 sing N N 375 SIA C2 O6 sing N N 376 SIA C3 C4 sing N N 377 SIA C3 H32 sing N N 378 SIA C3 H31 sing N N 379 SIA C4 C5 sing N N 380 SIA C4 O4 sing N N 381 SIA C4 H4 sing N N 382 SIA C5 C6 sing N N 383 SIA C5 N5 sing N N 384 SIA C5 H5 sing N N 385 SIA C6 C7 sing N N 386 SIA C6 O6 sing N N 387 SIA C6 H6 sing N N 388 SIA C7 C8 sing N N 389 SIA C7 O7 sing N N 390 SIA C7 H7 sing N N 391 SIA C8 C9 sing N N 392 SIA C8 O8 sing N N 393 SIA C8 H8 sing N N 394 SIA C9 O9 sing N N 395 SIA C9 H92 sing N N 396 SIA C9 H91 sing N N 397 SIA C10 C11 sing N N 398 SIA C10 N5 sing N N 399 SIA C10 O10 doub N N 400 SIA C11 H111 sing N N 401 SIA C11 H113 sing N N 402 SIA C11 H112 sing N N 403 SIA N5 HN5 sing N N 404 SIA O1B HO1B sing N N 405 SIA O2 HO2 sing N N 406 SIA O4 HO4 sing N N 407 SIA O7 HO7 sing N N 408 SIA O8 HO8 sing N N 409 SIA O9 HO9 sing N N 410 THR N CA sing N N 411 THR N H sing N N 412 THR N H2 sing N N 413 THR CA C sing N N 414 THR CA CB sing N N 415 THR CA HA sing N N 416 THR C O doub N N 417 THR C OXT sing N N 418 THR CB OG1 sing N N 419 THR CB CG2 sing N N 420 THR CB HB sing N N 421 THR OG1 HG1 sing N N 422 THR CG2 HG21 sing N N 423 THR CG2 HG22 sing N N 424 THR CG2 HG23 sing N N 425 THR OXT HXT sing N N 426 TYR N CA sing N N 427 TYR N H sing N N 428 TYR N H2 sing N N 429 TYR CA C sing N N 430 TYR CA CB sing N N 431 TYR CA HA sing N N 432 TYR C O doub N N 433 TYR C OXT sing N N 434 TYR CB CG sing N N 435 TYR CB HB2 sing N N 436 TYR CB HB3 sing N N 437 TYR CG CD1 doub Y N 438 TYR CG CD2 sing Y N 439 TYR CD1 CE1 sing Y N 440 TYR CD1 HD1 sing N N 441 TYR CD2 CE2 doub Y N 442 TYR CD2 HD2 sing N N 443 TYR CE1 CZ doub Y N 444 TYR CE1 HE1 sing N N 445 TYR CE2 CZ sing Y N 446 TYR CE2 HE2 sing N N 447 TYR CZ OH sing N N 448 TYR OH HH sing N N 449 TYR OXT HXT sing N N 450 VAL N CA sing N N 451 VAL N H sing N N 452 VAL N H2 sing N N 453 VAL CA C sing N N 454 VAL CA CB sing N N 455 VAL CA HA sing N N 456 VAL C O doub N N 457 VAL C OXT sing N N 458 VAL CB CG1 sing N N 459 VAL CB CG2 sing N N 460 VAL CB HB sing N N 461 VAL CG1 HG11 sing N N 462 VAL CG1 HG12 sing N N 463 VAL CG1 HG13 sing N N 464 VAL CG2 HG21 sing N N 465 VAL CG2 HG22 sing N N 466 VAL CG2 HG23 sing N N 467 VAL OXT HXT sing N N 468 # loop_ _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_mon_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.hetero B 2 NAG 1 B NAG 1 X NAG 603 n B 2 GAL 2 B GAL 2 X GAL 602 n B 2 SIA 3 B SIA 3 X SIA 601 n B 2 FUC 4 B FUC 4 X FUC 604 n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier FUC 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 LFucpa FUC 'COMMON NAME' GMML 1.0 a-L-fucopyranose FUC 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 a-L-Fucp FUC 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 Fuc GAL 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DGalpb GAL 'COMMON NAME' GMML 1.0 b-D-galactopyranose GAL 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-Galp GAL 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 Gal NAG 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DGlcpNAcb NAG 'COMMON NAME' GMML 1.0 N-acetyl-b-D-glucopyranosamine NAG 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-GlcpNAc NAG 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 GlcNAc SIA 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DNeup5Aca SIA 'COMMON NAME' GMML 1.0 'N-acetyl-a-D-neuraminic acid' SIA 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 a-D-Neup5Ac SIA 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 Neu5Ac # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_descriptor.ordinal _pdbx_entity_branch_descriptor.entity_id _pdbx_entity_branch_descriptor.descriptor _pdbx_entity_branch_descriptor.type _pdbx_entity_branch_descriptor.program _pdbx_entity_branch_descriptor.program_version 1 2 'DNeup5Aca2-3DGalpb1-4[LFucpa1-3]DGlcpNAcb1-ROH' 'Glycam Condensed Sequence' GMML 1.0 2 2 'WURCS=2.0/4,4,3/[a2122h-1b_1-5_2*NCC/3=O][a1221m-1a_1-5][a2112h-1b_1-5][Aad21122h-2a_2-6_5*NCC/3=O]/1-2-3-4/a3-b1_a4-c1_c3-d2' WURCS PDB2Glycan 1.1.0 3 2 '[][b-D-GlcpNAc]{[(3+1)][a-L-Fucp]{}[(4+1)][b-D-Galp]{[(3+2)][a-D-Neup5Ac]{}}}' LINUCS PDB-CARE ? # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.value_order _pdbx_entity_branch_link.details 1 2 2 GAL C1 O1 1 NAG O4 HO4 sing ? 2 2 3 SIA C2 O2 2 GAL O3 HO3 sing ? 3 2 4 FUC C1 O1 1 NAG O3 HO3 sing ? # loop_ _pdbx_entity_branch_list.entity_id _pdbx_entity_branch_list.comp_id _pdbx_entity_branch_list.num _pdbx_entity_branch_list.hetero 2 NAG 1 n 2 GAL 2 n 2 SIA 3 n 2 FUC 4 n # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 'PHOSPHATE ION' PO4 4 GLYCEROL GOL 5 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 1M4V _pdbx_initial_refinement_model.details 'PDB ENTRY 1M4V' #