HEADER DNA BINDING PROTEIN 13-SEP-07 2Z90 TITLE CRYSTAL STRUCTURE OF THE SECOND DPS FROM MYCOBACTERIUM SMEGMATIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: STARVATION-INDUCIBLE DNA-BINDING PROTEIN OR FINE TANGLED COMPND 3 PILI MAJOR SUBUNIT; COMPND 4 CHAIN: A, B, C, D; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM SMEGMATIS STR. MC2 155; SOURCE 3 ORGANISM_TAXID: 246196; SOURCE 4 STRAIN: MC(2)155; SOURCE 5 GENE: MSMEG_3242; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21DE3; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PETMSDPS2 KEYWDS DNA-BINDING PROTEIN, QUARTERNARY ASSEMBLY, FERROXIDATION, DNA BINDING KEYWDS 2 PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR S.ROY,R.SARASWATHI,D.CHATTERJI,M.VIJAYAN REVDAT 3 01-NOV-23 2Z90 1 REMARK LINK REVDAT 2 24-FEB-09 2Z90 1 VERSN REVDAT 1 22-APR-08 2Z90 0 JRNL AUTH S.ROY,R.SARASWATHI,D.CHATTERJI,M.VIJAYAN JRNL TITL STRUCTURAL STUDIES ON THE SECOND MYCOBACTERIUM SMEGMATIS JRNL TITL 2 DPS: INVARIANT AND VARIABLE FEATURES OF STRUCTURE, ASSEMBLY JRNL TITL 3 AND FUNCTION. JRNL REF J.MOL.BIOL. V. 375 948 2008 JRNL REFN ISSN 0022-2836 JRNL PMID 18061613 JRNL DOI 10.1016/J.JMB.2007.10.023 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.94 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 4171381.750 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 26434 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.187 REMARK 3 FREE R VALUE : 0.227 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 1276 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.006 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.55 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.50 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 4104 REMARK 3 BIN R VALUE (WORKING SET) : 0.2120 REMARK 3 BIN FREE R VALUE : 0.2700 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.80 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 207 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.019 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4973 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 8 REMARK 3 SOLVENT ATOMS : 412 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 30.60 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.80 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 3.13000 REMARK 3 B22 (A**2) : 3.13000 REMARK 3 B33 (A**2) : -6.25000 REMARK 3 B12 (A**2) : 2.55000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.24 REMARK 3 ESD FROM SIGMAA (A) : 0.20 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.31 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.27 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.006 REMARK 3 BOND ANGLES (DEGREES) : 1.200 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 19.20 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.880 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.150 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 1.760 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 1.910 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 2.630 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.32 REMARK 3 BSOL : 38.08 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : ION.PARAM REMARK 3 PARAMETER FILE 4 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : WATER.TOP REMARK 3 TOPOLOGY FILE 3 : ION.TOP REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2Z90 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 26-SEP-07. REMARK 100 THE DEPOSITION ID IS D_1000027672. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-MAY-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU ULTRAX 18 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : OSMIC MIRROR REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAR SCANNER 345 MM PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26434 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 17.20 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.14300 REMARK 200 FOR THE DATA SET : 15.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.49 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.3 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.48000 REMARK 200 FOR SHELL : 3.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1O9R REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.53 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.30 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20MM TRIS-HCL (PH 7.9), 200 MM NACL, REMARK 280 PEG-3000, 200MM MGCL2, 0.1M SODIUM CACODYLATE (PH 6.5), REMARK 280 MICROBATCH METHOD UNDER OIL, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 45.00400 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 25.98307 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 140.50733 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 45.00400 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 25.98307 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 140.50733 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 45.00400 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 25.98307 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 140.50733 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 45.00400 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 25.98307 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 140.50733 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 45.00400 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 25.98307 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 140.50733 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 45.00400 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 25.98307 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 140.50733 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 51.96614 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 281.01467 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 51.96614 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 281.01467 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 51.96614 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 281.01467 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 51.96614 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 281.01467 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 51.96614 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 281.01467 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 51.96614 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 281.01467 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DODECAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DODECAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 55020 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 57450 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -209.4 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 90.00800 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 45.00400 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 77.94921 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 MG MG A 163 LIES ON A SPECIAL POSITION. REMARK 375 CL CL A 164 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 263 LIES ON A SPECIAL POSITION. REMARK 375 HOH D 256 LIES ON A SPECIAL POSITION. REMARK 375 HOH D 257 LIES ON A SPECIAL POSITION. REMARK 375 HOH D 258 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET B 1 REMARK 465 MET C 1 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MET A 1 CG SD CE REMARK 470 ASP A 9 CG OD1 OD2 REMARK 470 SER B 2 OG REMARK 470 SER C 2 OG REMARK 470 MET D 1 CG SD CE REMARK 470 THR D 6 OG1 CG2 REMARK 470 GLU D 7 CB CG CD OE1 OE2 REMARK 470 SER D 8 CB OG REMARK 470 ASP D 9 CG OD1 OD2 REMARK 470 ILE D 10 CG1 CG2 CD1 REMARK 470 ALA D 15 CB REMARK 470 GLU D 65 CG CD OE1 OE2 REMARK 470 LYS D 160 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 7 121.49 2.65 REMARK 500 PHE A 100 -149.93 -118.62 REMARK 500 THR B 6 54.13 -104.38 REMARK 500 PRO B 98 153.31 -49.68 REMARK 500 PHE B 100 -155.28 -122.02 REMARK 500 GLU C 7 126.17 -39.67 REMARK 500 PHE C 100 -168.84 -117.43 REMARK 500 LYS C 160 -85.94 -64.39 REMARK 500 PHE D 100 -178.42 74.83 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE2 B 162 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 41 NE2 REMARK 620 2 ASP B 68 OD1 101.2 REMARK 620 3 ASP B 68 OD2 155.0 54.5 REMARK 620 4 GLU B 72 OE1 90.3 88.7 94.5 REMARK 620 5 HOH B 258 O 106.7 152.0 97.8 89.5 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 163 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 48 OD1 REMARK 620 2 ASP A 51 OD2 91.3 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE2 A 162 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 68 OD1 REMARK 620 2 ASP A 68 OD2 52.2 REMARK 620 3 GLU A 72 OE2 84.0 77.0 REMARK 620 4 HOH A 244 O 152.9 100.6 89.7 REMARK 620 5 HIS B 41 NE2 106.8 158.4 97.4 100.2 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE2 D 162 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS C 41 NE2 REMARK 620 2 ASP D 68 OD1 106.9 REMARK 620 3 ASP D 68 OD2 159.1 52.3 REMARK 620 4 GLU D 72 OE2 89.6 100.6 96.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE2 C 162 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP C 68 OD1 REMARK 620 2 ASP C 68 OD2 52.9 REMARK 620 3 GLU C 72 OE2 102.5 102.3 REMARK 620 4 HIS D 41 NE2 105.4 157.0 88.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG D 163 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN D 48 OD1 REMARK 620 2 ASP D 51 OD2 89.2 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FE2 D 162 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FE2 C 162 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG D 163 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FE2 B 162 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FE2 A 162 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 163 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 163 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 164 DBREF 2Z90 A 1 161 UNP A0QXB7 A0QXB7_MYCS2 1 161 DBREF 2Z90 B 1 161 UNP A0QXB7 A0QXB7_MYCS2 1 161 DBREF 2Z90 C 1 161 UNP A0QXB7 A0QXB7_MYCS2 1 161 DBREF 2Z90 D 1 161 UNP A0QXB7 A0QXB7_MYCS2 1 161 SEQRES 1 A 161 MET SER ALA ARG ARG THR GLU SER ASP ILE GLN GLY PHE SEQRES 2 A 161 HIS ALA THR PRO GLU PHE GLY GLY ASN LEU GLN LYS VAL SEQRES 3 A 161 LEU VAL ASP LEU ILE GLU LEU SER LEU GLN GLY LYS GLN SEQRES 4 A 161 ALA HIS TRP ASN VAL VAL GLY SER ASN PHE ARG ASP LEU SEQRES 5 A 161 HIS LEU GLN LEU ASP GLU LEU VAL ASP PHE ALA ARG GLU SEQRES 6 A 161 GLY SER ASP THR ILE ALA GLU ARG MET ARG ALA LEU ASP SEQRES 7 A 161 ALA VAL PRO ASP GLY ARG SER ASP THR VAL ALA ALA THR SEQRES 8 A 161 THR THR LEU PRO GLU PHE PRO ALA PHE GLU ARG SER THR SEQRES 9 A 161 ALA ASP VAL VAL ASP LEU ILE THR THR ARG ILE ASN ALA SEQRES 10 A 161 THR VAL ASP THR ILE ARG ARG VAL HIS ASP ALA VAL ASP SEQRES 11 A 161 ALA GLU ASP PRO SER THR ALA ASP LEU LEU HIS GLY LEU SEQRES 12 A 161 ILE ASP GLY LEU GLU LYS GLN ALA TRP LEU ILE ARG SER SEQRES 13 A 161 GLU ASN ARG LYS VAL SEQRES 1 B 161 MET SER ALA ARG ARG THR GLU SER ASP ILE GLN GLY PHE SEQRES 2 B 161 HIS ALA THR PRO GLU PHE GLY GLY ASN LEU GLN LYS VAL SEQRES 3 B 161 LEU VAL ASP LEU ILE GLU LEU SER LEU GLN GLY LYS GLN SEQRES 4 B 161 ALA HIS TRP ASN VAL VAL GLY SER ASN PHE ARG ASP LEU SEQRES 5 B 161 HIS LEU GLN LEU ASP GLU LEU VAL ASP PHE ALA ARG GLU SEQRES 6 B 161 GLY SER ASP THR ILE ALA GLU ARG MET ARG ALA LEU ASP SEQRES 7 B 161 ALA VAL PRO ASP GLY ARG SER ASP THR VAL ALA ALA THR SEQRES 8 B 161 THR THR LEU PRO GLU PHE PRO ALA PHE GLU ARG SER THR SEQRES 9 B 161 ALA ASP VAL VAL ASP LEU ILE THR THR ARG ILE ASN ALA SEQRES 10 B 161 THR VAL ASP THR ILE ARG ARG VAL HIS ASP ALA VAL ASP SEQRES 11 B 161 ALA GLU ASP PRO SER THR ALA ASP LEU LEU HIS GLY LEU SEQRES 12 B 161 ILE ASP GLY LEU GLU LYS GLN ALA TRP LEU ILE ARG SER SEQRES 13 B 161 GLU ASN ARG LYS VAL SEQRES 1 C 161 MET SER ALA ARG ARG THR GLU SER ASP ILE GLN GLY PHE SEQRES 2 C 161 HIS ALA THR PRO GLU PHE GLY GLY ASN LEU GLN LYS VAL SEQRES 3 C 161 LEU VAL ASP LEU ILE GLU LEU SER LEU GLN GLY LYS GLN SEQRES 4 C 161 ALA HIS TRP ASN VAL VAL GLY SER ASN PHE ARG ASP LEU SEQRES 5 C 161 HIS LEU GLN LEU ASP GLU LEU VAL ASP PHE ALA ARG GLU SEQRES 6 C 161 GLY SER ASP THR ILE ALA GLU ARG MET ARG ALA LEU ASP SEQRES 7 C 161 ALA VAL PRO ASP GLY ARG SER ASP THR VAL ALA ALA THR SEQRES 8 C 161 THR THR LEU PRO GLU PHE PRO ALA PHE GLU ARG SER THR SEQRES 9 C 161 ALA ASP VAL VAL ASP LEU ILE THR THR ARG ILE ASN ALA SEQRES 10 C 161 THR VAL ASP THR ILE ARG ARG VAL HIS ASP ALA VAL ASP SEQRES 11 C 161 ALA GLU ASP PRO SER THR ALA ASP LEU LEU HIS GLY LEU SEQRES 12 C 161 ILE ASP GLY LEU GLU LYS GLN ALA TRP LEU ILE ARG SER SEQRES 13 C 161 GLU ASN ARG LYS VAL SEQRES 1 D 161 MET SER ALA ARG ARG THR GLU SER ASP ILE GLN GLY PHE SEQRES 2 D 161 HIS ALA THR PRO GLU PHE GLY GLY ASN LEU GLN LYS VAL SEQRES 3 D 161 LEU VAL ASP LEU ILE GLU LEU SER LEU GLN GLY LYS GLN SEQRES 4 D 161 ALA HIS TRP ASN VAL VAL GLY SER ASN PHE ARG ASP LEU SEQRES 5 D 161 HIS LEU GLN LEU ASP GLU LEU VAL ASP PHE ALA ARG GLU SEQRES 6 D 161 GLY SER ASP THR ILE ALA GLU ARG MET ARG ALA LEU ASP SEQRES 7 D 161 ALA VAL PRO ASP GLY ARG SER ASP THR VAL ALA ALA THR SEQRES 8 D 161 THR THR LEU PRO GLU PHE PRO ALA PHE GLU ARG SER THR SEQRES 9 D 161 ALA ASP VAL VAL ASP LEU ILE THR THR ARG ILE ASN ALA SEQRES 10 D 161 THR VAL ASP THR ILE ARG ARG VAL HIS ASP ALA VAL ASP SEQRES 11 D 161 ALA GLU ASP PRO SER THR ALA ASP LEU LEU HIS GLY LEU SEQRES 12 D 161 ILE ASP GLY LEU GLU LYS GLN ALA TRP LEU ILE ARG SER SEQRES 13 D 161 GLU ASN ARG LYS VAL HET FE2 A 162 1 HET MG A 163 1 HET CL A 164 1 HET FE2 B 162 1 HET CL B 163 1 HET FE2 C 162 1 HET FE2 D 162 1 HET MG D 163 1 HETNAM FE2 FE (II) ION HETNAM MG MAGNESIUM ION HETNAM CL CHLORIDE ION FORMUL 5 FE2 4(FE 2+) FORMUL 6 MG 2(MG 2+) FORMUL 7 CL 2(CL 1-) FORMUL 13 HOH *412(H2 O) HELIX 1 1 THR A 16 ASN A 43 1 28 HELIX 2 2 ASN A 48 LEU A 77 1 30 HELIX 3 3 ARG A 84 THR A 92 1 9 HELIX 4 4 THR A 104 ASP A 133 1 30 HELIX 5 5 ASP A 133 SER A 156 1 24 HELIX 6 6 THR B 16 ASN B 43 1 28 HELIX 7 7 ASN B 48 LEU B 77 1 30 HELIX 8 8 ARG B 84 THR B 92 1 9 HELIX 9 9 THR B 104 ASP B 133 1 30 HELIX 10 10 ASP B 133 SER B 156 1 24 HELIX 11 11 GLU B 157 ARG B 159 5 3 HELIX 12 12 THR C 16 ASN C 43 1 28 HELIX 13 13 ASN C 48 LEU C 77 1 30 HELIX 14 14 ARG C 84 THR C 92 1 9 HELIX 15 15 THR C 104 ASP C 133 1 30 HELIX 16 16 ASP C 133 SER C 156 1 24 HELIX 17 17 GLU C 157 ARG C 159 5 3 HELIX 18 18 THR D 16 ASN D 43 1 28 HELIX 19 19 ASN D 48 LEU D 77 1 30 HELIX 20 20 ARG D 84 THR D 92 1 9 HELIX 21 21 THR D 104 ASP D 133 1 30 HELIX 22 22 ASP D 133 SER D 156 1 24 HELIX 23 23 GLU D 157 ARG D 159 5 3 SHEET 1 A 2 VAL A 44 VAL A 45 0 SHEET 2 A 2 ARG A 102 SER A 103 1 O ARG A 102 N VAL A 45 SHEET 1 B 2 VAL B 44 VAL B 45 0 SHEET 2 B 2 ARG B 102 SER B 103 1 O ARG B 102 N VAL B 45 SHEET 1 C 2 VAL C 44 VAL C 45 0 SHEET 2 C 2 ARG C 102 SER C 103 1 O ARG C 102 N VAL C 45 SHEET 1 D 2 VAL D 44 VAL D 45 0 SHEET 2 D 2 ARG D 102 SER D 103 1 O ARG D 102 N VAL D 45 LINK NE2 HIS A 41 FE FE2 B 162 1555 1555 2.41 LINK OD1 ASN A 48 MG MG A 163 1555 1555 2.09 LINK OD2 ASP A 51 MG MG A 163 1555 1555 2.05 LINK OD1 ASP A 68 FE FE2 A 162 1555 1555 2.41 LINK OD2 ASP A 68 FE FE2 A 162 1555 1555 2.57 LINK OE2 GLU A 72 FE FE2 A 162 1555 1555 2.02 LINK FE FE2 A 162 O HOH A 244 1555 1555 2.43 LINK FE FE2 A 162 NE2 HIS B 41 1555 1555 2.32 LINK OD1 ASP B 68 FE FE2 B 162 1555 1555 2.46 LINK OD2 ASP B 68 FE FE2 B 162 1555 1555 2.33 LINK OE1 GLU B 72 FE FE2 B 162 1555 1555 2.06 LINK FE FE2 B 162 O HOH B 258 1555 1555 2.39 LINK NE2 HIS C 41 FE FE2 D 162 1555 1555 2.29 LINK OD1 ASP C 68 FE FE2 C 162 1555 1555 2.42 LINK OD2 ASP C 68 FE FE2 C 162 1555 1555 2.52 LINK OE2 GLU C 72 FE FE2 C 162 1555 1555 2.22 LINK FE FE2 C 162 NE2 HIS D 41 1555 1555 2.40 LINK OD1 ASN D 48 MG MG D 163 1555 1555 1.97 LINK OD2 ASP D 51 MG MG D 163 1555 1555 2.21 LINK OD1 ASP D 68 FE FE2 D 162 1555 1555 2.50 LINK OD2 ASP D 68 FE FE2 D 162 1555 1555 2.51 LINK OE2 GLU D 72 FE FE2 D 162 1555 1555 2.48 SITE 1 AC1 3 HIS C 41 ASP D 68 GLU D 72 SITE 1 AC2 4 ASP C 68 GLU C 72 HOH C 241 HIS D 41 SITE 1 AC3 6 ASN B 48 ASP B 51 ASN C 48 ASP C 51 SITE 2 AC3 6 ASN D 48 ASP D 51 SITE 1 AC4 5 LYS A 38 HIS A 41 ASP B 68 GLU B 72 SITE 2 AC4 5 HOH B 258 SITE 1 AC5 5 ASP A 68 GLU A 72 HOH A 244 LYS B 38 SITE 2 AC5 5 HIS B 41 SITE 1 AC6 2 ASN A 48 ASP A 51 SITE 1 AC7 4 ARG B 50 ARG C 50 HOH C 174 ARG D 50 SITE 1 AC8 2 ARG A 50 HOH A 263 CRYST1 90.008 90.008 421.522 90.00 90.00 120.00 H 3 2 72 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011110 0.006414 0.000000 0.00000 SCALE2 0.000000 0.012829 0.000000 0.00000 SCALE3 0.000000 0.000000 0.002372 0.00000