data_2Z9M # _entry.id 2Z9M # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.280 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 2Z9M RCSB RCSB027694 WWPDB D_1000027694 # _pdbx_database_PDB_obs_spr.id OBSLTE _pdbx_database_PDB_obs_spr.date 2009-01-20 _pdbx_database_PDB_obs_spr.pdb_id 2ZXJ _pdbx_database_PDB_obs_spr.replace_pdb_id 2Z9M _pdbx_database_PDB_obs_spr.details ? # _pdbx_database_status.status_code OBS _pdbx_database_status.entry_id 2Z9M _pdbx_database_status.recvd_initial_deposition_date 2007-09-21 _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf OBS _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Okajima, T.' 1 'Doi, A.' 2 'Utsumi, R.' 3 # _citation.id primary _citation.title 'Response Regulator YycF Essential for Bacterial Growth: X-ray Crystal Structure of DNA-binding Domain and PhoB-like DNA Recognition' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Doi, A.' 1 primary 'Okajima, T.' 2 primary 'Utsumi, R.' 3 # _cell.entry_id 2Z9M _cell.length_a 65.518 _cell.length_b 45.452 _cell.length_c 78.080 _cell.angle_alpha 90.00 _cell.angle_beta 103.41 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 2Z9M _symmetry.space_group_name_H-M 'C 1 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'response regulator YycF' 14417.156 2 ? ? 'C-terminal DNA-binding domain' ? 2 water nat water 18.015 82 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MQPAQDTGNVTNEITIKDIVIYPDAYSIKKRGEDIELTHREFELFHYLSKHMGQVMTREHLLQTVWGYDYFGDVRTVDVT IRRLREKIEDDPSHPEYIVTRRGVGYFLQQHELEHHHHHH ; _entity_poly.pdbx_seq_one_letter_code_can ;MQPAQDTGNVTNEITIKDIVIYPDAYSIKKRGEDIELTHREFELFHYLSKHMGQVMTREHLLQTVWGYDYFGDVRTVDVT IRRLREKIEDDPSHPEYIVTRRGVGYFLQQHELEHHHHHH ; _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 GLN n 1 3 PRO n 1 4 ALA n 1 5 GLN n 1 6 ASP n 1 7 THR n 1 8 GLY n 1 9 ASN n 1 10 VAL n 1 11 THR n 1 12 ASN n 1 13 GLU n 1 14 ILE n 1 15 THR n 1 16 ILE n 1 17 LYS n 1 18 ASP n 1 19 ILE n 1 20 VAL n 1 21 ILE n 1 22 TYR n 1 23 PRO n 1 24 ASP n 1 25 ALA n 1 26 TYR n 1 27 SER n 1 28 ILE n 1 29 LYS n 1 30 LYS n 1 31 ARG n 1 32 GLY n 1 33 GLU n 1 34 ASP n 1 35 ILE n 1 36 GLU n 1 37 LEU n 1 38 THR n 1 39 HIS n 1 40 ARG n 1 41 GLU n 1 42 PHE n 1 43 GLU n 1 44 LEU n 1 45 PHE n 1 46 HIS n 1 47 TYR n 1 48 LEU n 1 49 SER n 1 50 LYS n 1 51 HIS n 1 52 MET n 1 53 GLY n 1 54 GLN n 1 55 VAL n 1 56 MET n 1 57 THR n 1 58 ARG n 1 59 GLU n 1 60 HIS n 1 61 LEU n 1 62 LEU n 1 63 GLN n 1 64 THR n 1 65 VAL n 1 66 TRP n 1 67 GLY n 1 68 TYR n 1 69 ASP n 1 70 TYR n 1 71 PHE n 1 72 GLY n 1 73 ASP n 1 74 VAL n 1 75 ARG n 1 76 THR n 1 77 VAL n 1 78 ASP n 1 79 VAL n 1 80 THR n 1 81 ILE n 1 82 ARG n 1 83 ARG n 1 84 LEU n 1 85 ARG n 1 86 GLU n 1 87 LYS n 1 88 ILE n 1 89 GLU n 1 90 ASP n 1 91 ASP n 1 92 PRO n 1 93 SER n 1 94 HIS n 1 95 PRO n 1 96 GLU n 1 97 TYR n 1 98 ILE n 1 99 VAL n 1 100 THR n 1 101 ARG n 1 102 ARG n 1 103 GLY n 1 104 VAL n 1 105 GLY n 1 106 TYR n 1 107 PHE n 1 108 LEU n 1 109 GLN n 1 110 GLN n 1 111 HIS n 1 112 GLU n 1 113 LEU n 1 114 GLU n 1 115 HIS n 1 116 HIS n 1 117 HIS n 1 118 HIS n 1 119 HIS n 1 120 HIS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene yycF _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain 209P _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Staphylococcus aureus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 1280 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET-21a _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q9XCM7_STAAU _struct_ref.pdbx_db_accession Q9XCM7 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;QPAQDTGNVTNEITIKDIVIYPDAYSIKKRGEDIELTHREFELFHYLSKHMGQVMTREHLLQTVWGYDYFGDVRTVDVTI RRLREKIEDDPSHPEYIVTRRGVGYFLQQHE ; _struct_ref.pdbx_align_begin 123 _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2Z9M A 2 ? 112 ? Q9XCM7 123 ? 233 ? 123 233 2 1 2Z9M B 2 ? 112 ? Q9XCM7 123 ? 233 ? 123 233 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2Z9M MET A 1 ? UNP Q9XCM7 ? ? 'INITIATING METHIONINE' 122 1 1 2Z9M LEU A 113 ? UNP Q9XCM7 ? ? 'EXPRESSION TAG' 234 2 1 2Z9M GLU A 114 ? UNP Q9XCM7 ? ? 'EXPRESSION TAG' 235 3 1 2Z9M HIS A 115 ? UNP Q9XCM7 ? ? 'EXPRESSION TAG' 236 4 1 2Z9M HIS A 116 ? UNP Q9XCM7 ? ? 'EXPRESSION TAG' 237 5 1 2Z9M HIS A 117 ? UNP Q9XCM7 ? ? 'EXPRESSION TAG' 238 6 1 2Z9M HIS A 118 ? UNP Q9XCM7 ? ? 'EXPRESSION TAG' 239 7 1 2Z9M HIS A 119 ? UNP Q9XCM7 ? ? 'EXPRESSION TAG' 240 8 1 2Z9M HIS A 120 ? UNP Q9XCM7 ? ? 'EXPRESSION TAG' 241 9 2 2Z9M MET B 1 ? UNP Q9XCM7 ? ? 'INITIATING METHIONINE' 122 10 2 2Z9M LEU B 113 ? UNP Q9XCM7 ? ? 'EXPRESSION TAG' 234 11 2 2Z9M GLU B 114 ? UNP Q9XCM7 ? ? 'EXPRESSION TAG' 235 12 2 2Z9M HIS B 115 ? UNP Q9XCM7 ? ? 'EXPRESSION TAG' 236 13 2 2Z9M HIS B 116 ? UNP Q9XCM7 ? ? 'EXPRESSION TAG' 237 14 2 2Z9M HIS B 117 ? UNP Q9XCM7 ? ? 'EXPRESSION TAG' 238 15 2 2Z9M HIS B 118 ? UNP Q9XCM7 ? ? 'EXPRESSION TAG' 239 16 2 2Z9M HIS B 119 ? UNP Q9XCM7 ? ? 'EXPRESSION TAG' 240 17 2 2Z9M HIS B 120 ? UNP Q9XCM7 ? ? 'EXPRESSION TAG' 241 18 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 2Z9M _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 1.96 _exptl_crystal.density_percent_sol 37.28 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.5 _exptl_crystal_grow.pdbx_details '25%(w/v) PEG3350, 0.2M Ammonium acetate, 0.1M HEPES, pH 7.5, VAPOR DIFFUSION, SITTING DROP, temperature 293K' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type 'Bruker DIP-6040' _diffrn_detector.pdbx_collection_date 2006-04-12 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Si(1 1 1 )' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'SPRING-8 BEAMLINE BL44XU' _diffrn_source.pdbx_synchrotron_site SPring-8 _diffrn_source.pdbx_synchrotron_beamline BL44XU _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.9 # _reflns.entry_id 2Z9M _reflns.observed_criterion_sigma_F 0 _reflns.observed_criterion_sigma_I 3.0 _reflns.d_resolution_high 1.87 _reflns.d_resolution_low 28.5 _reflns.number_all 18160 _reflns.number_obs 18101 _reflns.percent_possible_obs 97.2 _reflns.pdbx_Rmerge_I_obs 0.049 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 7.0 _reflns.B_iso_Wilson_estimate 38.0 _reflns.pdbx_redundancy 3.4 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 1.87 _reflns_shell.d_res_low 1.97 _reflns_shell.percent_possible_all 99.9 _reflns_shell.Rmerge_I_obs 0.395 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 20.2 _reflns_shell.pdbx_redundancy 3.5 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 2Z9M _refine.ls_d_res_high 1.87 _refine.ls_d_res_low 28.5 _refine.pdbx_ls_sigma_F 1.0 _refine.pdbx_ls_sigma_I 0.395 _refine.ls_number_reflns_all 18101 _refine.ls_number_reflns_obs 18101 _refine.ls_number_reflns_R_free 877 _refine.ls_percent_reflns_obs 4.7 _refine.ls_R_factor_all 0.237 _refine.ls_R_factor_obs 0.237 _refine.ls_R_factor_R_work 0.235 _refine.ls_R_factor_R_free 0.288 _refine.ls_redundancy_reflns_obs ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model 'PDB ENTRY 2D1V' _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_stereochemistry_target_values 'Engh & Huber' _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.pdbx_isotropic_thermal_model ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.details ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_overall_ESU_R ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1717 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 82 _refine_hist.number_atoms_total 1799 _refine_hist.d_res_high 1.87 _refine_hist.d_res_low 28.5 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_angle_d 0.006 ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg 1.1 ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d 22.5 ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d 0.62 ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used ? _refine_ls_shell.d_res_high 1.87 _refine_ls_shell.d_res_low 1.99 _refine_ls_shell.number_reflns_R_work ? _refine_ls_shell.R_factor_R_work 0.419 _refine_ls_shell.percent_reflns_obs 99.7 _refine_ls_shell.R_factor_R_free 0.394 _refine_ls_shell.R_factor_R_free_error 0.030 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 167 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs 2909 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 2Z9M _struct.title 'Crystal structure of YycF DNA-binding domain from Staphylococcus aureus' _struct.pdbx_descriptor 'response regulator YycF' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2Z9M _struct_keywords.pdbx_keywords TRANSCRIPTION _struct_keywords.text ;two-component system, YycG, response regulator, helix-turn-helix motif, DNA-binding domain, Phosphorylation, Transcription, Transcription regulation, Two-component regulatory system ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 THR A 38 ? LYS A 50 ? THR A 159 LYS A 171 1 ? 13 HELX_P HELX_P2 2 THR A 57 ? GLY A 67 ? THR A 178 GLY A 188 1 ? 11 HELX_P HELX_P3 3 VAL A 74 ? GLU A 89 ? VAL A 195 GLU A 210 1 ? 16 HELX_P HELX_P4 4 PRO B 23 ? TYR B 26 ? PRO B 144 TYR B 147 5 ? 4 HELX_P HELX_P5 5 THR B 38 ? LYS B 50 ? THR B 159 LYS B 171 1 ? 13 HELX_P HELX_P6 6 ARG B 58 ? TRP B 66 ? ARG B 179 TRP B 187 1 ? 9 HELX_P HELX_P7 7 VAL B 74 ? GLU B 89 ? VAL B 195 GLU B 210 1 ? 16 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 4 ? B ? 2 ? C ? 4 ? D ? 3 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel B 1 2 ? anti-parallel C 1 2 ? anti-parallel C 2 3 ? anti-parallel C 3 4 ? anti-parallel D 1 2 ? anti-parallel D 2 3 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ILE A 14 ? ILE A 16 ? ILE A 135 ILE A 137 A 2 ILE A 19 ? TYR A 22 ? ILE A 140 TYR A 143 A 3 SER A 27 ? LYS A 30 ? SER A 148 LYS A 151 A 4 GLU A 33 ? ILE A 35 ? GLU A 154 ILE A 156 B 1 ILE A 98 ? ARG A 101 ? ILE A 219 ARG A 222 B 2 GLY A 105 ? LEU A 108 ? GLY A 226 LEU A 229 C 1 ILE B 14 ? ILE B 16 ? ILE B 135 ILE B 137 C 2 ILE B 19 ? TYR B 22 ? ILE B 140 TYR B 143 C 3 SER B 27 ? LYS B 30 ? SER B 148 LYS B 151 C 4 GLU B 33 ? ILE B 35 ? GLU B 154 ILE B 156 D 1 MET B 56 ? THR B 57 ? MET B 177 THR B 178 D 2 GLY B 105 ? LEU B 108 ? GLY B 226 LEU B 229 D 3 ILE B 98 ? ARG B 101 ? ILE B 219 ARG B 222 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N ILE A 14 ? N ILE A 135 O ILE A 21 ? O ILE A 142 A 2 3 N VAL A 20 ? N VAL A 141 O LYS A 29 ? O LYS A 150 A 3 4 N LYS A 30 ? N LYS A 151 O GLU A 33 ? O GLU A 154 B 1 2 N ARG A 101 ? N ARG A 222 O GLY A 105 ? O GLY A 226 C 1 2 N ILE B 14 ? N ILE B 135 O ILE B 21 ? O ILE B 142 C 2 3 N TYR B 22 ? N TYR B 143 O SER B 27 ? O SER B 148 C 3 4 N LYS B 30 ? N LYS B 151 O GLU B 33 ? O GLU B 154 D 1 2 N MET B 56 ? N MET B 177 O TYR B 106 ? O TYR B 227 D 2 3 O PHE B 107 ? O PHE B 228 N VAL B 99 ? N VAL B 220 # _database_PDB_matrix.entry_id 2Z9M _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2Z9M _atom_sites.fract_transf_matrix[1][1] 0.015263 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.003639 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.022001 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.013166 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 122 ? ? ? A . n A 1 2 GLN 2 123 ? ? ? A . n A 1 3 PRO 3 124 ? ? ? A . n A 1 4 ALA 4 125 ? ? ? A . n A 1 5 GLN 5 126 ? ? ? A . n A 1 6 ASP 6 127 ? ? ? A . n A 1 7 THR 7 128 ? ? ? A . n A 1 8 GLY 8 129 ? ? ? A . n A 1 9 ASN 9 130 ? ? ? A . n A 1 10 VAL 10 131 ? ? ? A . n A 1 11 THR 11 132 ? ? ? A . n A 1 12 ASN 12 133 133 ASN ASN A . n A 1 13 GLU 13 134 134 GLU GLU A . n A 1 14 ILE 14 135 135 ILE ILE A . n A 1 15 THR 15 136 136 THR THR A . n A 1 16 ILE 16 137 137 ILE ILE A . n A 1 17 LYS 17 138 138 LYS LYS A . n A 1 18 ASP 18 139 139 ASP ASP A . n A 1 19 ILE 19 140 140 ILE ILE A . n A 1 20 VAL 20 141 141 VAL VAL A . n A 1 21 ILE 21 142 142 ILE ILE A . n A 1 22 TYR 22 143 143 TYR TYR A . n A 1 23 PRO 23 144 144 PRO PRO A . n A 1 24 ASP 24 145 145 ASP ASP A . n A 1 25 ALA 25 146 146 ALA ALA A . n A 1 26 TYR 26 147 147 TYR TYR A . n A 1 27 SER 27 148 148 SER SER A . n A 1 28 ILE 28 149 149 ILE ILE A . n A 1 29 LYS 29 150 150 LYS LYS A . n A 1 30 LYS 30 151 151 LYS LYS A . n A 1 31 ARG 31 152 152 ARG ARG A . n A 1 32 GLY 32 153 153 GLY GLY A . n A 1 33 GLU 33 154 154 GLU GLU A . n A 1 34 ASP 34 155 155 ASP ASP A . n A 1 35 ILE 35 156 156 ILE ILE A . n A 1 36 GLU 36 157 157 GLU GLU A . n A 1 37 LEU 37 158 158 LEU LEU A . n A 1 38 THR 38 159 159 THR THR A . n A 1 39 HIS 39 160 160 HIS HIS A . n A 1 40 ARG 40 161 161 ARG ARG A . n A 1 41 GLU 41 162 162 GLU GLU A . n A 1 42 PHE 42 163 163 PHE PHE A . n A 1 43 GLU 43 164 164 GLU GLU A . n A 1 44 LEU 44 165 165 LEU LEU A . n A 1 45 PHE 45 166 166 PHE PHE A . n A 1 46 HIS 46 167 167 HIS HIS A . n A 1 47 TYR 47 168 168 TYR TYR A . n A 1 48 LEU 48 169 169 LEU LEU A . n A 1 49 SER 49 170 170 SER SER A . n A 1 50 LYS 50 171 171 LYS LYS A . n A 1 51 HIS 51 172 172 HIS HIS A . n A 1 52 MET 52 173 173 MET MET A . n A 1 53 GLY 53 174 174 GLY GLY A . n A 1 54 GLN 54 175 175 GLN GLN A . n A 1 55 VAL 55 176 176 VAL VAL A . n A 1 56 MET 56 177 177 MET MET A . n A 1 57 THR 57 178 178 THR THR A . n A 1 58 ARG 58 179 179 ARG ARG A . n A 1 59 GLU 59 180 180 GLU GLU A . n A 1 60 HIS 60 181 181 HIS HIS A . n A 1 61 LEU 61 182 182 LEU LEU A . n A 1 62 LEU 62 183 183 LEU LEU A . n A 1 63 GLN 63 184 184 GLN GLN A . n A 1 64 THR 64 185 185 THR THR A . n A 1 65 VAL 65 186 186 VAL VAL A . n A 1 66 TRP 66 187 187 TRP TRP A . n A 1 67 GLY 67 188 188 GLY GLY A . n A 1 68 TYR 68 189 189 TYR TYR A . n A 1 69 ASP 69 190 190 ASP ASP A . n A 1 70 TYR 70 191 191 TYR TYR A . n A 1 71 PHE 71 192 192 PHE PHE A . n A 1 72 GLY 72 193 193 GLY GLY A . n A 1 73 ASP 73 194 194 ASP ASP A . n A 1 74 VAL 74 195 195 VAL VAL A . n A 1 75 ARG 75 196 196 ARG ARG A . n A 1 76 THR 76 197 197 THR THR A . n A 1 77 VAL 77 198 198 VAL VAL A . n A 1 78 ASP 78 199 199 ASP ASP A . n A 1 79 VAL 79 200 200 VAL VAL A . n A 1 80 THR 80 201 201 THR THR A . n A 1 81 ILE 81 202 202 ILE ILE A . n A 1 82 ARG 82 203 203 ARG ARG A . n A 1 83 ARG 83 204 204 ARG ARG A . n A 1 84 LEU 84 205 205 LEU LEU A . n A 1 85 ARG 85 206 206 ARG ARG A . n A 1 86 GLU 86 207 207 GLU GLU A . n A 1 87 LYS 87 208 208 LYS LYS A . n A 1 88 ILE 88 209 209 ILE ILE A . n A 1 89 GLU 89 210 210 GLU GLU A . n A 1 90 ASP 90 211 211 ASP ASP A . n A 1 91 ASP 91 212 212 ASP ASP A . n A 1 92 PRO 92 213 213 PRO PRO A . n A 1 93 SER 93 214 214 SER SER A . n A 1 94 HIS 94 215 215 HIS HIS A . n A 1 95 PRO 95 216 216 PRO PRO A . n A 1 96 GLU 96 217 217 GLU GLU A . n A 1 97 TYR 97 218 218 TYR TYR A . n A 1 98 ILE 98 219 219 ILE ILE A . n A 1 99 VAL 99 220 220 VAL VAL A . n A 1 100 THR 100 221 221 THR THR A . n A 1 101 ARG 101 222 222 ARG ARG A . n A 1 102 ARG 102 223 223 ARG ARG A . n A 1 103 GLY 103 224 224 GLY GLY A . n A 1 104 VAL 104 225 225 VAL VAL A . n A 1 105 GLY 105 226 226 GLY GLY A . n A 1 106 TYR 106 227 227 TYR TYR A . n A 1 107 PHE 107 228 228 PHE PHE A . n A 1 108 LEU 108 229 229 LEU LEU A . n A 1 109 GLN 109 230 230 GLN GLN A . n A 1 110 GLN 110 231 231 GLN GLN A . n A 1 111 HIS 111 232 232 HIS HIS A . n A 1 112 GLU 112 233 ? ? ? A . n A 1 113 LEU 113 234 ? ? ? A . n A 1 114 GLU 114 235 ? ? ? A . n A 1 115 HIS 115 236 ? ? ? A . n A 1 116 HIS 116 237 ? ? ? A . n A 1 117 HIS 117 238 ? ? ? A . n A 1 118 HIS 118 239 ? ? ? A . n A 1 119 HIS 119 240 ? ? ? A . n A 1 120 HIS 120 241 ? ? ? A . n B 1 1 MET 1 122 ? ? ? B . n B 1 2 GLN 2 123 ? ? ? B . n B 1 3 PRO 3 124 ? ? ? B . n B 1 4 ALA 4 125 ? ? ? B . n B 1 5 GLN 5 126 ? ? ? B . n B 1 6 ASP 6 127 ? ? ? B . n B 1 7 THR 7 128 ? ? ? B . n B 1 8 GLY 8 129 ? ? ? B . n B 1 9 ASN 9 130 ? ? ? B . n B 1 10 VAL 10 131 ? ? ? B . n B 1 11 THR 11 132 ? ? ? B . n B 1 12 ASN 12 133 133 ASN ASN B . n B 1 13 GLU 13 134 134 GLU GLU B . n B 1 14 ILE 14 135 135 ILE ILE B . n B 1 15 THR 15 136 136 THR THR B . n B 1 16 ILE 16 137 137 ILE ILE B . n B 1 17 LYS 17 138 138 LYS LYS B . n B 1 18 ASP 18 139 139 ASP ASP B . n B 1 19 ILE 19 140 140 ILE ILE B . n B 1 20 VAL 20 141 141 VAL VAL B . n B 1 21 ILE 21 142 142 ILE ILE B . n B 1 22 TYR 22 143 143 TYR TYR B . n B 1 23 PRO 23 144 144 PRO PRO B . n B 1 24 ASP 24 145 145 ASP ASP B . n B 1 25 ALA 25 146 146 ALA ALA B . n B 1 26 TYR 26 147 147 TYR TYR B . n B 1 27 SER 27 148 148 SER SER B . n B 1 28 ILE 28 149 149 ILE ILE B . n B 1 29 LYS 29 150 150 LYS LYS B . n B 1 30 LYS 30 151 151 LYS LYS B . n B 1 31 ARG 31 152 152 ARG ARG B . n B 1 32 GLY 32 153 153 GLY GLY B . n B 1 33 GLU 33 154 154 GLU GLU B . n B 1 34 ASP 34 155 155 ASP ASP B . n B 1 35 ILE 35 156 156 ILE ILE B . n B 1 36 GLU 36 157 157 GLU GLU B . n B 1 37 LEU 37 158 158 LEU LEU B . n B 1 38 THR 38 159 159 THR THR B . n B 1 39 HIS 39 160 160 HIS HIS B . n B 1 40 ARG 40 161 161 ARG ARG B . n B 1 41 GLU 41 162 162 GLU GLU B . n B 1 42 PHE 42 163 163 PHE PHE B . n B 1 43 GLU 43 164 164 GLU GLU B . n B 1 44 LEU 44 165 165 LEU LEU B . n B 1 45 PHE 45 166 166 PHE PHE B . n B 1 46 HIS 46 167 167 HIS HIS B . n B 1 47 TYR 47 168 168 TYR TYR B . n B 1 48 LEU 48 169 169 LEU LEU B . n B 1 49 SER 49 170 170 SER SER B . n B 1 50 LYS 50 171 171 LYS LYS B . n B 1 51 HIS 51 172 172 HIS HIS B . n B 1 52 MET 52 173 173 MET MET B . n B 1 53 GLY 53 174 174 GLY GLY B . n B 1 54 GLN 54 175 175 GLN GLN B . n B 1 55 VAL 55 176 176 VAL VAL B . n B 1 56 MET 56 177 177 MET MET B . n B 1 57 THR 57 178 178 THR THR B . n B 1 58 ARG 58 179 179 ARG ARG B . n B 1 59 GLU 59 180 180 GLU GLU B . n B 1 60 HIS 60 181 181 HIS HIS B . n B 1 61 LEU 61 182 182 LEU LEU B . n B 1 62 LEU 62 183 183 LEU LEU B . n B 1 63 GLN 63 184 184 GLN GLN B . n B 1 64 THR 64 185 185 THR THR B . n B 1 65 VAL 65 186 186 VAL VAL B . n B 1 66 TRP 66 187 187 TRP TRP B . n B 1 67 GLY 67 188 188 GLY GLY B . n B 1 68 TYR 68 189 189 TYR TYR B . n B 1 69 ASP 69 190 190 ASP ASP B . n B 1 70 TYR 70 191 191 TYR TYR B . n B 1 71 PHE 71 192 192 PHE PHE B . n B 1 72 GLY 72 193 193 GLY GLY B . n B 1 73 ASP 73 194 194 ASP ASP B . n B 1 74 VAL 74 195 195 VAL VAL B . n B 1 75 ARG 75 196 196 ARG ARG B . n B 1 76 THR 76 197 197 THR THR B . n B 1 77 VAL 77 198 198 VAL VAL B . n B 1 78 ASP 78 199 199 ASP ASP B . n B 1 79 VAL 79 200 200 VAL VAL B . n B 1 80 THR 80 201 201 THR THR B . n B 1 81 ILE 81 202 202 ILE ILE B . n B 1 82 ARG 82 203 203 ARG ARG B . n B 1 83 ARG 83 204 204 ARG ARG B . n B 1 84 LEU 84 205 205 LEU LEU B . n B 1 85 ARG 85 206 206 ARG ARG B . n B 1 86 GLU 86 207 207 GLU GLU B . n B 1 87 LYS 87 208 208 LYS LYS B . n B 1 88 ILE 88 209 209 ILE ILE B . n B 1 89 GLU 89 210 210 GLU GLU B . n B 1 90 ASP 90 211 211 ASP ASP B . n B 1 91 ASP 91 212 212 ASP ASP B . n B 1 92 PRO 92 213 213 PRO PRO B . n B 1 93 SER 93 214 214 SER SER B . n B 1 94 HIS 94 215 215 HIS HIS B . n B 1 95 PRO 95 216 216 PRO PRO B . n B 1 96 GLU 96 217 217 GLU GLU B . n B 1 97 TYR 97 218 218 TYR TYR B . n B 1 98 ILE 98 219 219 ILE ILE B . n B 1 99 VAL 99 220 220 VAL VAL B . n B 1 100 THR 100 221 221 THR THR B . n B 1 101 ARG 101 222 222 ARG ARG B . n B 1 102 ARG 102 223 223 ARG ARG B . n B 1 103 GLY 103 224 224 GLY GLY B . n B 1 104 VAL 104 225 225 VAL VAL B . n B 1 105 GLY 105 226 226 GLY GLY B . n B 1 106 TYR 106 227 227 TYR TYR B . n B 1 107 PHE 107 228 228 PHE PHE B . n B 1 108 LEU 108 229 229 LEU LEU B . n B 1 109 GLN 109 230 230 GLN GLN B . n B 1 110 GLN 110 231 231 GLN GLN B . n B 1 111 HIS 111 232 232 HIS HIS B . n B 1 112 GLU 112 233 ? ? ? B . n B 1 113 LEU 113 234 ? ? ? B . n B 1 114 GLU 114 235 ? ? ? B . n B 1 115 HIS 115 236 ? ? ? B . n B 1 116 HIS 116 237 ? ? ? B . n B 1 117 HIS 117 238 ? ? ? B . n B 1 118 HIS 118 239 ? ? ? B . n B 1 119 HIS 119 240 ? ? ? B . n B 1 120 HIS 120 241 ? ? ? B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HOH 1 242 1 HOH HOH A . C 2 HOH 2 243 3 HOH HOH A . C 2 HOH 3 244 5 HOH HOH A . C 2 HOH 4 245 11 HOH HOH A . C 2 HOH 5 246 12 HOH HOH A . C 2 HOH 6 247 13 HOH HOH A . C 2 HOH 7 248 14 HOH HOH A . C 2 HOH 8 249 18 HOH HOH A . C 2 HOH 9 250 20 HOH HOH A . C 2 HOH 10 251 21 HOH HOH A . C 2 HOH 11 252 23 HOH HOH A . C 2 HOH 12 253 27 HOH HOH A . C 2 HOH 13 254 28 HOH HOH A . C 2 HOH 14 255 31 HOH HOH A . C 2 HOH 15 256 37 HOH HOH A . C 2 HOH 16 257 40 HOH HOH A . C 2 HOH 17 258 41 HOH HOH A . C 2 HOH 18 259 42 HOH HOH A . C 2 HOH 19 260 44 HOH HOH A . C 2 HOH 20 261 46 HOH HOH A . C 2 HOH 21 262 48 HOH HOH A . C 2 HOH 22 263 50 HOH HOH A . C 2 HOH 23 264 52 HOH HOH A . C 2 HOH 24 265 56 HOH HOH A . C 2 HOH 25 266 58 HOH HOH A . C 2 HOH 26 267 62 HOH HOH A . C 2 HOH 27 268 64 HOH HOH A . C 2 HOH 28 269 68 HOH HOH A . C 2 HOH 29 270 69 HOH HOH A . C 2 HOH 30 271 70 HOH HOH A . C 2 HOH 31 272 71 HOH HOH A . C 2 HOH 32 273 72 HOH HOH A . C 2 HOH 33 274 79 HOH HOH A . C 2 HOH 34 275 81 HOH HOH A . D 2 HOH 1 242 2 HOH HOH B . D 2 HOH 2 243 4 HOH HOH B . D 2 HOH 3 244 6 HOH HOH B . D 2 HOH 4 245 7 HOH HOH B . D 2 HOH 5 246 8 HOH HOH B . D 2 HOH 6 247 9 HOH HOH B . D 2 HOH 7 248 10 HOH HOH B . D 2 HOH 8 249 15 HOH HOH B . D 2 HOH 9 250 16 HOH HOH B . D 2 HOH 10 251 17 HOH HOH B . D 2 HOH 11 252 19 HOH HOH B . D 2 HOH 12 253 22 HOH HOH B . D 2 HOH 13 254 24 HOH HOH B . D 2 HOH 14 255 25 HOH HOH B . D 2 HOH 15 256 26 HOH HOH B . D 2 HOH 16 257 29 HOH HOH B . D 2 HOH 17 258 30 HOH HOH B . D 2 HOH 18 259 32 HOH HOH B . D 2 HOH 19 260 33 HOH HOH B . D 2 HOH 20 261 34 HOH HOH B . D 2 HOH 21 262 35 HOH HOH B . D 2 HOH 22 263 36 HOH HOH B . D 2 HOH 23 264 38 HOH HOH B . D 2 HOH 24 265 39 HOH HOH B . D 2 HOH 25 266 43 HOH HOH B . D 2 HOH 26 267 45 HOH HOH B . D 2 HOH 27 268 47 HOH HOH B . D 2 HOH 28 269 49 HOH HOH B . D 2 HOH 29 270 51 HOH HOH B . D 2 HOH 30 271 53 HOH HOH B . D 2 HOH 31 272 54 HOH HOH B . D 2 HOH 32 273 55 HOH HOH B . D 2 HOH 33 274 57 HOH HOH B . D 2 HOH 34 275 59 HOH HOH B . D 2 HOH 35 276 60 HOH HOH B . D 2 HOH 36 277 61 HOH HOH B . D 2 HOH 37 278 63 HOH HOH B . D 2 HOH 38 279 65 HOH HOH B . D 2 HOH 39 280 66 HOH HOH B . D 2 HOH 40 281 67 HOH HOH B . D 2 HOH 41 282 73 HOH HOH B . D 2 HOH 42 283 74 HOH HOH B . D 2 HOH 43 284 75 HOH HOH B . D 2 HOH 44 285 76 HOH HOH B . D 2 HOH 45 286 77 HOH HOH B . D 2 HOH 46 287 78 HOH HOH B . D 2 HOH 47 288 80 HOH HOH B . D 2 HOH 48 289 82 HOH HOH B . # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_and_software_defined_assembly PISA monomeric 1 2 author_and_software_defined_assembly PISA monomeric 1 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,C 2 1 B,D # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id A _pdbx_struct_special_symmetry.auth_comp_id HOH _pdbx_struct_special_symmetry.auth_seq_id 261 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id C _pdbx_struct_special_symmetry.label_comp_id HOH _pdbx_struct_special_symmetry.label_seq_id . # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2008-09-30 2 'Structure model' 1 1 2009-01-20 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description 1 1 'Structure model' repository 'Initial release' ? 2 2 'Structure model' repository Obsolete ? # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal PHASER 'model building' . ? 1 CNS refinement . ? 2 MOSFLM 'data reduction' . ? 3 SCALA 'data scaling' . ? 4 PHASER phasing . ? 5 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 GLU A 134 ? ? 178.36 158.45 2 1 LYS A 138 ? ? 58.18 -121.51 3 1 TYR A 218 ? ? -105.51 -75.57 4 1 ARG A 223 ? ? -38.47 133.36 5 1 VAL A 225 ? ? -128.21 -75.26 6 1 GLU B 134 ? ? 175.75 146.00 7 1 LYS B 138 ? ? 60.17 -120.93 8 1 ASP B 145 ? ? -57.55 6.99 9 1 TYR B 218 ? ? -95.03 -69.31 10 1 ARG B 223 ? ? -39.60 122.51 # _pdbx_validate_planes.id 1 _pdbx_validate_planes.PDB_model_num 1 _pdbx_validate_planes.auth_comp_id ARG _pdbx_validate_planes.auth_asym_id B _pdbx_validate_planes.auth_seq_id 161 _pdbx_validate_planes.PDB_ins_code ? _pdbx_validate_planes.label_alt_id ? _pdbx_validate_planes.rmsd 0.292 _pdbx_validate_planes.type 'SIDE CHAIN' # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET 122 ? A MET 1 2 1 Y 1 A GLN 123 ? A GLN 2 3 1 Y 1 A PRO 124 ? A PRO 3 4 1 Y 1 A ALA 125 ? A ALA 4 5 1 Y 1 A GLN 126 ? A GLN 5 6 1 Y 1 A ASP 127 ? A ASP 6 7 1 Y 1 A THR 128 ? A THR 7 8 1 Y 1 A GLY 129 ? A GLY 8 9 1 Y 1 A ASN 130 ? A ASN 9 10 1 Y 1 A VAL 131 ? A VAL 10 11 1 Y 1 A THR 132 ? A THR 11 12 1 Y 1 A GLU 233 ? A GLU 112 13 1 Y 1 A LEU 234 ? A LEU 113 14 1 Y 1 A GLU 235 ? A GLU 114 15 1 Y 1 A HIS 236 ? A HIS 115 16 1 Y 1 A HIS 237 ? A HIS 116 17 1 Y 1 A HIS 238 ? A HIS 117 18 1 Y 1 A HIS 239 ? A HIS 118 19 1 Y 1 A HIS 240 ? A HIS 119 20 1 Y 1 A HIS 241 ? A HIS 120 21 1 Y 1 B MET 122 ? B MET 1 22 1 Y 1 B GLN 123 ? B GLN 2 23 1 Y 1 B PRO 124 ? B PRO 3 24 1 Y 1 B ALA 125 ? B ALA 4 25 1 Y 1 B GLN 126 ? B GLN 5 26 1 Y 1 B ASP 127 ? B ASP 6 27 1 Y 1 B THR 128 ? B THR 7 28 1 Y 1 B GLY 129 ? B GLY 8 29 1 Y 1 B ASN 130 ? B ASN 9 30 1 Y 1 B VAL 131 ? B VAL 10 31 1 Y 1 B THR 132 ? B THR 11 32 1 Y 1 B GLU 233 ? B GLU 112 33 1 Y 1 B LEU 234 ? B LEU 113 34 1 Y 1 B GLU 235 ? B GLU 114 35 1 Y 1 B HIS 236 ? B HIS 115 36 1 Y 1 B HIS 237 ? B HIS 116 37 1 Y 1 B HIS 238 ? B HIS 117 38 1 Y 1 B HIS 239 ? B HIS 118 39 1 Y 1 B HIS 240 ? B HIS 119 40 1 Y 1 B HIS 241 ? B HIS 120 # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH #