HEADER OXIDOREDUCTASE 10-OCT-07 2ZAT TITLE CRYSTAL STRUCTURE OF A MAMMALIAN REDUCTASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: DEHYDROGENASE/REDUCTASE SDR FAMILY MEMBER 4; COMPND 3 CHAIN: A, B, C, D; COMPND 4 SYNONYM: NADPH-DEPENDENT CARBONYL REDUCTASE/NADP-RETINOL COMPND 5 DEHYDROGENASE, CR, PHCR, PEROXISOMAL SHORT-CHAIN ALCOHOL COMPND 6 DEHYDROGENASE, NADPH-DEPENDENT RETINOL DEHYDROGENASE/REDUCTASE, NDRD; COMPND 7 EC: 1.1.1.184; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SUS SCROFA; SOURCE 3 ORGANISM_COMMON: PIG; SOURCE 4 ORGANISM_TAXID: 9823; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)PLYSS; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PCR T7/CT TOPO KEYWDS ALPHA/BETA, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR N.TANAKA,K.AOKI,K.T.NAKAMURA REVDAT 3 01-NOV-23 2ZAT 1 REMARK REVDAT 2 24-FEB-09 2ZAT 1 VERSN REVDAT 1 29-APR-08 2ZAT 0 JRNL AUTH N.TANAKA,K.AOKI,S.ISHIKURA,M.NAGANO,Y.IMAMURA,A.HARA, JRNL AUTH 2 K.T.NAKAMURA JRNL TITL MOLECULAR BASIS FOR PEROXISOMAL LOCALIZATION OF TETRAMERIC JRNL TITL 2 CARBONYL REDUCTASE. JRNL REF STRUCTURE V. 16 388 2008 JRNL REFN ISSN 0969-2126 JRNL PMID 18334214 JRNL DOI 10.1016/J.STR.2007.12.022 REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.24 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 167340 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.162 REMARK 3 R VALUE (WORKING SET) : 0.161 REMARK 3 FREE R VALUE : 0.187 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 8816 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.54 REMARK 3 REFLECTION IN BIN (WORKING SET) : 12265 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.1990 REMARK 3 BIN FREE R VALUE SET COUNT : 614 REMARK 3 BIN FREE R VALUE : 0.2190 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7516 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 192 REMARK 3 SOLVENT ATOMS : 772 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 13.70 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 14.51 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.06000 REMARK 3 B22 (A**2) : 0.06000 REMARK 3 B33 (A**2) : -0.12000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.062 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.065 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.038 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 0.987 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.964 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.952 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 7828 ; 0.014 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 7336 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 10652 ; 1.540 ; 1.996 REMARK 3 BOND ANGLES OTHERS (DEGREES): 17016 ; 0.856 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 1000 ; 5.473 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1280 ; 0.094 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 8572 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1432 ; 0.004 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1628 ; 0.212 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 8839 ; 0.243 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): 4885 ; 0.083 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 563 ; 0.172 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 14 ; 0.308 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 63 ; 0.259 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 30 ; 0.224 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 4964 ; 0.929 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 7996 ; 1.733 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2864 ; 2.512 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2656 ; 4.174 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2ZAT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 16-OCT-07. REMARK 100 THE DEPOSITION ID IS D_1000027737. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 7.50 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : AR-NW12A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 176173 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 200 DATA REDUNDANCY : 6.400 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.10200 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 5.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.58 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.1 REMARK 200 DATA REDUNDANCY IN SHELL : 4.80 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.29700 REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 1CYD REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.68 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.55 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.2M SODIUM ACETATE, 20%(V/V) REMARK 280 GLYCEROL, 0.1M HEPES/NAOH BUFFER, PH 7.50, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 42 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z+1/2 REMARK 290 4555 Y,-X,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 47.15400 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 47.15400 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4, 5 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 18170 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 33340 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -64.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5530 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20150 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -13.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5470 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20360 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -12.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5440 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20350 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -21.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 5 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5410 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20320 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -21.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 SER A 3 REMARK 465 THR A 4 REMARK 465 GLY A 5 REMARK 465 VAL A 6 REMARK 465 GLU A 7 REMARK 465 ARG A 8 REMARK 465 ARG A 9 REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 465 SER B 3 REMARK 465 THR B 4 REMARK 465 GLY B 5 REMARK 465 VAL B 6 REMARK 465 GLU B 7 REMARK 465 ARG B 8 REMARK 465 ARG B 9 REMARK 465 MET C 1 REMARK 465 ALA C 2 REMARK 465 SER C 3 REMARK 465 THR C 4 REMARK 465 GLY C 5 REMARK 465 VAL C 6 REMARK 465 GLU C 7 REMARK 465 ARG C 8 REMARK 465 ARG C 9 REMARK 465 MET D 1 REMARK 465 ALA D 2 REMARK 465 SER D 3 REMARK 465 THR D 4 REMARK 465 GLY D 5 REMARK 465 VAL D 6 REMARK 465 GLU D 7 REMARK 465 ARG D 8 REMARK 465 ARG D 9 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O3D NAP C 3261 O HOH C 3448 1.78 REMARK 500 O HOH C 3348 O HOH C 3448 1.92 REMARK 500 O HOH B 2308 O HOH B 2425 1.93 REMARK 500 O HOH C 3306 O HOH C 3457 1.93 REMARK 500 O HOH B 2372 O HOH B 2375 2.06 REMARK 500 O HOH A 1382 O HOH A 1402 2.11 REMARK 500 O PHE B 104 O HOH B 2447 2.11 REMARK 500 O PHE A 104 O HOH A 1437 2.15 REMARK 500 O HOH D 4299 O HOH D 4408 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 110 CB - CG - OD2 ANGL. DEV. = 7.8 DEGREES REMARK 500 ARG A 259 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 ASP B 208 CB - CG - OD2 ANGL. DEV. = 5.7 DEGREES REMARK 500 ARG C 259 NE - CZ - NH2 ANGL. DEV. = -3.5 DEGREES REMARK 500 ARG D 259 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 45 -168.28 -162.91 REMARK 500 VAL A 124 -61.13 -108.99 REMARK 500 SER A 150 -129.91 -105.44 REMARK 500 SER A 258 -86.09 -144.53 REMARK 500 ASN B 102 87.37 -152.21 REMARK 500 SER B 150 -128.34 -101.95 REMARK 500 SER B 258 -90.24 -145.04 REMARK 500 SER C 150 -130.95 -104.97 REMARK 500 ASN C 160 -0.20 72.83 REMARK 500 MET C 207 -78.66 -60.97 REMARK 500 SER C 258 -85.89 -141.04 REMARK 500 SER D 150 -129.37 -103.03 REMARK 500 SER D 258 -85.99 -141.77 REMARK 500 REMARK 500 REMARK: NULL DBREF 2ZAT A 1 260 UNP Q8WNV7 DHRS4_PIG 1 260 DBREF 2ZAT B 1 260 UNP Q8WNV7 DHRS4_PIG 1 260 DBREF 2ZAT C 1 260 UNP Q8WNV7 DHRS4_PIG 1 260 DBREF 2ZAT D 1 260 UNP Q8WNV7 DHRS4_PIG 1 260 SEQRES 1 A 260 MET ALA SER THR GLY VAL GLU ARG ARG LYS PRO LEU GLU SEQRES 2 A 260 ASN LYS VAL ALA LEU VAL THR ALA SER THR ASP GLY ILE SEQRES 3 A 260 GLY LEU ALA ILE ALA ARG ARG LEU ALA GLN ASP GLY ALA SEQRES 4 A 260 HIS VAL VAL VAL SER SER ARG LYS GLN GLU ASN VAL ASP SEQRES 5 A 260 ARG THR VAL ALA THR LEU GLN GLY GLU GLY LEU SER VAL SEQRES 6 A 260 THR GLY THR VAL CYS HIS VAL GLY LYS ALA GLU ASP ARG SEQRES 7 A 260 GLU ARG LEU VAL ALA MET ALA VAL ASN LEU HIS GLY GLY SEQRES 8 A 260 VAL ASP ILE LEU VAL SER ASN ALA ALA VAL ASN PRO PHE SEQRES 9 A 260 PHE GLY ASN ILE ILE ASP ALA THR GLU GLU VAL TRP ASP SEQRES 10 A 260 LYS ILE LEU HIS VAL ASN VAL LYS ALA THR VAL LEU MET SEQRES 11 A 260 THR LYS ALA VAL VAL PRO GLU MET GLU LYS ARG GLY GLY SEQRES 12 A 260 GLY SER VAL LEU ILE VAL SER SER VAL GLY ALA TYR HIS SEQRES 13 A 260 PRO PHE PRO ASN LEU GLY PRO TYR ASN VAL SER LYS THR SEQRES 14 A 260 ALA LEU LEU GLY LEU THR LYS ASN LEU ALA VAL GLU LEU SEQRES 15 A 260 ALA PRO ARG ASN ILE ARG VAL ASN CYS LEU ALA PRO GLY SEQRES 16 A 260 LEU ILE LYS THR ASN PHE SER GLN VAL LEU TRP MET ASP SEQRES 17 A 260 LYS ALA ARG LYS GLU TYR MET LYS GLU SER LEU ARG ILE SEQRES 18 A 260 ARG ARG LEU GLY ASN PRO GLU ASP CYS ALA GLY ILE VAL SEQRES 19 A 260 SER PHE LEU CYS SER GLU ASP ALA SER TYR ILE THR GLY SEQRES 20 A 260 GLU THR VAL VAL VAL GLY GLY GLY THR ALA SER ARG LEU SEQRES 1 B 260 MET ALA SER THR GLY VAL GLU ARG ARG LYS PRO LEU GLU SEQRES 2 B 260 ASN LYS VAL ALA LEU VAL THR ALA SER THR ASP GLY ILE SEQRES 3 B 260 GLY LEU ALA ILE ALA ARG ARG LEU ALA GLN ASP GLY ALA SEQRES 4 B 260 HIS VAL VAL VAL SER SER ARG LYS GLN GLU ASN VAL ASP SEQRES 5 B 260 ARG THR VAL ALA THR LEU GLN GLY GLU GLY LEU SER VAL SEQRES 6 B 260 THR GLY THR VAL CYS HIS VAL GLY LYS ALA GLU ASP ARG SEQRES 7 B 260 GLU ARG LEU VAL ALA MET ALA VAL ASN LEU HIS GLY GLY SEQRES 8 B 260 VAL ASP ILE LEU VAL SER ASN ALA ALA VAL ASN PRO PHE SEQRES 9 B 260 PHE GLY ASN ILE ILE ASP ALA THR GLU GLU VAL TRP ASP SEQRES 10 B 260 LYS ILE LEU HIS VAL ASN VAL LYS ALA THR VAL LEU MET SEQRES 11 B 260 THR LYS ALA VAL VAL PRO GLU MET GLU LYS ARG GLY GLY SEQRES 12 B 260 GLY SER VAL LEU ILE VAL SER SER VAL GLY ALA TYR HIS SEQRES 13 B 260 PRO PHE PRO ASN LEU GLY PRO TYR ASN VAL SER LYS THR SEQRES 14 B 260 ALA LEU LEU GLY LEU THR LYS ASN LEU ALA VAL GLU LEU SEQRES 15 B 260 ALA PRO ARG ASN ILE ARG VAL ASN CYS LEU ALA PRO GLY SEQRES 16 B 260 LEU ILE LYS THR ASN PHE SER GLN VAL LEU TRP MET ASP SEQRES 17 B 260 LYS ALA ARG LYS GLU TYR MET LYS GLU SER LEU ARG ILE SEQRES 18 B 260 ARG ARG LEU GLY ASN PRO GLU ASP CYS ALA GLY ILE VAL SEQRES 19 B 260 SER PHE LEU CYS SER GLU ASP ALA SER TYR ILE THR GLY SEQRES 20 B 260 GLU THR VAL VAL VAL GLY GLY GLY THR ALA SER ARG LEU SEQRES 1 C 260 MET ALA SER THR GLY VAL GLU ARG ARG LYS PRO LEU GLU SEQRES 2 C 260 ASN LYS VAL ALA LEU VAL THR ALA SER THR ASP GLY ILE SEQRES 3 C 260 GLY LEU ALA ILE ALA ARG ARG LEU ALA GLN ASP GLY ALA SEQRES 4 C 260 HIS VAL VAL VAL SER SER ARG LYS GLN GLU ASN VAL ASP SEQRES 5 C 260 ARG THR VAL ALA THR LEU GLN GLY GLU GLY LEU SER VAL SEQRES 6 C 260 THR GLY THR VAL CYS HIS VAL GLY LYS ALA GLU ASP ARG SEQRES 7 C 260 GLU ARG LEU VAL ALA MET ALA VAL ASN LEU HIS GLY GLY SEQRES 8 C 260 VAL ASP ILE LEU VAL SER ASN ALA ALA VAL ASN PRO PHE SEQRES 9 C 260 PHE GLY ASN ILE ILE ASP ALA THR GLU GLU VAL TRP ASP SEQRES 10 C 260 LYS ILE LEU HIS VAL ASN VAL LYS ALA THR VAL LEU MET SEQRES 11 C 260 THR LYS ALA VAL VAL PRO GLU MET GLU LYS ARG GLY GLY SEQRES 12 C 260 GLY SER VAL LEU ILE VAL SER SER VAL GLY ALA TYR HIS SEQRES 13 C 260 PRO PHE PRO ASN LEU GLY PRO TYR ASN VAL SER LYS THR SEQRES 14 C 260 ALA LEU LEU GLY LEU THR LYS ASN LEU ALA VAL GLU LEU SEQRES 15 C 260 ALA PRO ARG ASN ILE ARG VAL ASN CYS LEU ALA PRO GLY SEQRES 16 C 260 LEU ILE LYS THR ASN PHE SER GLN VAL LEU TRP MET ASP SEQRES 17 C 260 LYS ALA ARG LYS GLU TYR MET LYS GLU SER LEU ARG ILE SEQRES 18 C 260 ARG ARG LEU GLY ASN PRO GLU ASP CYS ALA GLY ILE VAL SEQRES 19 C 260 SER PHE LEU CYS SER GLU ASP ALA SER TYR ILE THR GLY SEQRES 20 C 260 GLU THR VAL VAL VAL GLY GLY GLY THR ALA SER ARG LEU SEQRES 1 D 260 MET ALA SER THR GLY VAL GLU ARG ARG LYS PRO LEU GLU SEQRES 2 D 260 ASN LYS VAL ALA LEU VAL THR ALA SER THR ASP GLY ILE SEQRES 3 D 260 GLY LEU ALA ILE ALA ARG ARG LEU ALA GLN ASP GLY ALA SEQRES 4 D 260 HIS VAL VAL VAL SER SER ARG LYS GLN GLU ASN VAL ASP SEQRES 5 D 260 ARG THR VAL ALA THR LEU GLN GLY GLU GLY LEU SER VAL SEQRES 6 D 260 THR GLY THR VAL CYS HIS VAL GLY LYS ALA GLU ASP ARG SEQRES 7 D 260 GLU ARG LEU VAL ALA MET ALA VAL ASN LEU HIS GLY GLY SEQRES 8 D 260 VAL ASP ILE LEU VAL SER ASN ALA ALA VAL ASN PRO PHE SEQRES 9 D 260 PHE GLY ASN ILE ILE ASP ALA THR GLU GLU VAL TRP ASP SEQRES 10 D 260 LYS ILE LEU HIS VAL ASN VAL LYS ALA THR VAL LEU MET SEQRES 11 D 260 THR LYS ALA VAL VAL PRO GLU MET GLU LYS ARG GLY GLY SEQRES 12 D 260 GLY SER VAL LEU ILE VAL SER SER VAL GLY ALA TYR HIS SEQRES 13 D 260 PRO PHE PRO ASN LEU GLY PRO TYR ASN VAL SER LYS THR SEQRES 14 D 260 ALA LEU LEU GLY LEU THR LYS ASN LEU ALA VAL GLU LEU SEQRES 15 D 260 ALA PRO ARG ASN ILE ARG VAL ASN CYS LEU ALA PRO GLY SEQRES 16 D 260 LEU ILE LYS THR ASN PHE SER GLN VAL LEU TRP MET ASP SEQRES 17 D 260 LYS ALA ARG LYS GLU TYR MET LYS GLU SER LEU ARG ILE SEQRES 18 D 260 ARG ARG LEU GLY ASN PRO GLU ASP CYS ALA GLY ILE VAL SEQRES 19 D 260 SER PHE LEU CYS SER GLU ASP ALA SER TYR ILE THR GLY SEQRES 20 D 260 GLU THR VAL VAL VAL GLY GLY GLY THR ALA SER ARG LEU HET NAP A1261 48 HET NAP B2261 48 HET NAP C3261 48 HET NAP D4261 48 HETNAM NAP NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE HETSYN NAP 2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE FORMUL 5 NAP 4(C21 H28 N7 O17 P3) FORMUL 9 HOH *772(H2 O) HELIX 1 1 ASP A 24 ASP A 37 1 14 HELIX 2 2 LYS A 47 GLU A 61 1 15 HELIX 3 3 LYS A 74 GLY A 90 1 17 HELIX 4 4 ASN A 107 ALA A 111 5 5 HELIX 5 5 THR A 112 VAL A 124 1 13 HELIX 6 6 VAL A 124 ARG A 141 1 18 HELIX 7 7 SER A 151 TYR A 155 5 5 HELIX 8 8 LEU A 161 ALA A 183 1 23 HELIX 9 9 SER A 202 MET A 207 1 6 HELIX 10 10 ASP A 208 ARG A 220 1 13 HELIX 11 11 ASN A 226 ASP A 229 5 4 HELIX 12 12 CYS A 230 CYS A 238 1 9 HELIX 13 13 SER A 239 SER A 243 5 5 HELIX 14 14 ASP B 24 ASP B 37 1 14 HELIX 15 15 LYS B 47 GLU B 61 1 15 HELIX 16 16 LYS B 74 GLY B 90 1 17 HELIX 17 17 ASN B 107 ALA B 111 5 5 HELIX 18 18 THR B 112 VAL B 124 1 13 HELIX 19 19 VAL B 124 ARG B 141 1 18 HELIX 20 20 SER B 151 TYR B 155 5 5 HELIX 21 21 LEU B 161 ALA B 183 1 23 HELIX 22 22 SER B 202 TRP B 206 5 5 HELIX 23 23 ASP B 208 ARG B 220 1 13 HELIX 24 24 ASN B 226 ASP B 229 5 4 HELIX 25 25 CYS B 230 CYS B 238 1 9 HELIX 26 26 SER B 239 SER B 243 5 5 HELIX 27 27 ASP C 24 ASP C 37 1 14 HELIX 28 28 LYS C 47 GLU C 61 1 15 HELIX 29 29 LYS C 74 GLY C 90 1 17 HELIX 30 30 ASN C 107 ALA C 111 5 5 HELIX 31 31 THR C 112 VAL C 124 1 13 HELIX 32 32 VAL C 124 ARG C 141 1 18 HELIX 33 33 SER C 151 TYR C 155 5 5 HELIX 34 34 LEU C 161 ALA C 183 1 23 HELIX 35 35 SER C 202 MET C 207 5 6 HELIX 36 36 ASP C 208 ARG C 220 1 13 HELIX 37 37 ASN C 226 ASP C 229 5 4 HELIX 38 38 CYS C 230 CYS C 238 1 9 HELIX 39 39 SER C 239 SER C 243 5 5 HELIX 40 40 ASP D 24 ASP D 37 1 14 HELIX 41 41 LYS D 47 GLU D 61 1 15 HELIX 42 42 LYS D 74 GLY D 90 1 17 HELIX 43 43 ASN D 107 ALA D 111 5 5 HELIX 44 44 THR D 112 VAL D 124 1 13 HELIX 45 45 VAL D 124 ARG D 141 1 18 HELIX 46 46 SER D 151 TYR D 155 5 5 HELIX 47 47 LEU D 161 ALA D 183 1 23 HELIX 48 48 SER D 202 MET D 207 1 6 HELIX 49 49 ASP D 208 ARG D 220 1 13 HELIX 50 50 ASN D 226 ASP D 229 5 4 HELIX 51 51 CYS D 230 CYS D 238 1 9 HELIX 52 52 SER D 239 SER D 243 5 5 SHEET 1 A 7 VAL A 65 VAL A 69 0 SHEET 2 A 7 HIS A 40 SER A 45 1 N VAL A 43 O THR A 66 SHEET 3 A 7 VAL A 16 VAL A 19 1 N ALA A 17 O HIS A 40 SHEET 4 A 7 ILE A 94 SER A 97 1 O VAL A 96 N LEU A 18 SHEET 5 A 7 GLY A 144 VAL A 149 1 O LEU A 147 N SER A 97 SHEET 6 A 7 ILE A 187 PRO A 194 1 O ARG A 188 N VAL A 146 SHEET 7 A 7 THR A 249 VAL A 252 1 O VAL A 250 N ALA A 193 SHEET 1 B 7 VAL B 65 VAL B 69 0 SHEET 2 B 7 HIS B 40 SER B 45 1 N VAL B 43 O THR B 66 SHEET 3 B 7 VAL B 16 VAL B 19 1 N ALA B 17 O HIS B 40 SHEET 4 B 7 ILE B 94 SER B 97 1 O VAL B 96 N LEU B 18 SHEET 5 B 7 GLY B 144 VAL B 149 1 O LEU B 147 N SER B 97 SHEET 6 B 7 ILE B 187 PRO B 194 1 O ARG B 188 N VAL B 146 SHEET 7 B 7 THR B 249 VAL B 252 1 O VAL B 250 N ALA B 193 SHEET 1 C 7 VAL C 65 VAL C 69 0 SHEET 2 C 7 HIS C 40 SER C 45 1 N VAL C 43 O THR C 66 SHEET 3 C 7 VAL C 16 VAL C 19 1 N ALA C 17 O HIS C 40 SHEET 4 C 7 ILE C 94 SER C 97 1 O VAL C 96 N LEU C 18 SHEET 5 C 7 GLY C 144 VAL C 149 1 O LEU C 147 N SER C 97 SHEET 6 C 7 ILE C 187 PRO C 194 1 O ARG C 188 N VAL C 146 SHEET 7 C 7 THR C 249 VAL C 252 1 O VAL C 250 N CYS C 191 SHEET 1 D 7 VAL D 65 VAL D 69 0 SHEET 2 D 7 HIS D 40 SER D 45 1 N VAL D 43 O THR D 66 SHEET 3 D 7 VAL D 16 VAL D 19 1 N ALA D 17 O HIS D 40 SHEET 4 D 7 ILE D 94 SER D 97 1 O VAL D 96 N LEU D 18 SHEET 5 D 7 GLY D 144 VAL D 149 1 O LEU D 147 N SER D 97 SHEET 6 D 7 ILE D 187 PRO D 194 1 O ARG D 188 N VAL D 146 SHEET 7 D 7 THR D 249 VAL D 252 1 O VAL D 250 N ALA D 193 CRYST1 109.612 109.612 94.308 90.00 90.00 90.00 P 42 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009123 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009123 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010604 0.00000