data_2ZCJ # _entry.id 2ZCJ # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.351 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2ZCJ pdb_00002zcj 10.2210/pdb2zcj/pdb NDB PD1048 ? ? RCSB RCSB027799 ? ? WWPDB D_1000027799 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 2HR1 'Ternary structure of the WT M.HhaI, C5-Cytosine DNA methyltransferase, with unmodified DNA and AdoHcy' unspecified PDB 2Z6U 'Ternary structure of the Glu119Ala M.HhaI, C5-Cytosine DNA methyltransferase, with unmodified DNA and AdoHcy' unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2ZCJ _pdbx_database_status.recvd_initial_deposition_date 2007-11-09 _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Shieh, F.K.' 1 'Reich, N.O.' 2 # _citation.id primary _citation.title 'AdoMet-dependent Methyl-transfer: Glu(119) Is Essential for DNA C5-Cytosine Methyltransferase M.HhaI' _citation.journal_abbrev J.Mol.Biol. _citation.journal_volume 373 _citation.page_first 1157 _citation.page_last 1168 _citation.year 2007 _citation.journal_id_ASTM JMOBAK _citation.country UK _citation.journal_id_ISSN 0022-2836 _citation.journal_id_CSD 0070 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 17897676 _citation.pdbx_database_id_DOI 10.1016/j.jmb.2007.08.009 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Shieh, F.K.' 1 ? primary 'Reich, N.O.' 2 ? # _cell.entry_id 2ZCJ _cell.length_a 98.470 _cell.length_b 98.470 _cell.length_c 321.615 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 2ZCJ _symmetry.space_group_name_H-M 'H 3 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;DNA (5'-D(*DGP*DAP*DTP*DAP*DGP*DCP*DGP*DCP*DTP*DAP*DTP*DC)-3') ; 3662.404 1 ? ? ? ? 2 polymer syn ;DNA (5'-D(*DTP*DGP*DAP*DTP*DAP*DGP*DCP*DGP*DCP*DTP*DAP*DTP*DC)-3') ; 3966.597 1 ? ? ? ? 3 polymer man 'Modification methylase HhaI' 37041.223 1 2.1.1.37 E119Q ? ? 4 non-polymer syn S-ADENOSYL-L-HOMOCYSTEINE 384.411 1 ? ? ? ? 5 water nat water 18.015 72 ? ? ? ? # _entity_name_com.entity_id 3 _entity_name_com.name 'Cytosine-specific methyltransferase HhaI, M.HhaI' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polydeoxyribonucleotide no no '(DG)(DA)(DT)(DA)(DG)(DC)(DG)(DC)(DT)(DA)(DT)(DC)' GATAGCGCTATC C ? 2 polydeoxyribonucleotide no no '(DT)(DG)(DA)(DT)(DA)(DG)(DC)(DG)(DC)(DT)(DA)(DT)(DC)' TGATAGCGCTATC D ? 3 'polypeptide(L)' no no ;MIEIKDKQLTGLRFIDLFAGLGGFRLALESCGAECVYSNEWDKYAQEVYEMNFGEKPEGDITQVNEKTIPDHDILCAGFP CQAFSISGKQKGFEDSRGTLFFDIARIVREKKPKVVFMQNVKNFASHDNGNTLEVVKNTMNELDYSFHAKVLNALDYGIP QKRERIYMICFRNDLNIQNFQFPKPFELNTFVKDLLLPDSEVEHLVIDRKDLVMTNQEIEQTTPKTVRLGIVGKGGQGER IYSTRGIAITLSAYGGGIFAKTGGYLVNGKTRKLHPRECARVMGYPDSYKVHPSTSQAYKQFGNSVVINVLQYIAYNIGS SLNFKPY ; ;MIEIKDKQLTGLRFIDLFAGLGGFRLALESCGAECVYSNEWDKYAQEVYEMNFGEKPEGDITQVNEKTIPDHDILCAGFP CQAFSISGKQKGFEDSRGTLFFDIARIVREKKPKVVFMQNVKNFASHDNGNTLEVVKNTMNELDYSFHAKVLNALDYGIP QKRERIYMICFRNDLNIQNFQFPKPFELNTFVKDLLLPDSEVEHLVIDRKDLVMTNQEIEQTTPKTVRLGIVGKGGQGER IYSTRGIAITLSAYGGGIFAKTGGYLVNGKTRKLHPRECARVMGYPDSYKVHPSTSQAYKQFGNSVVINVLQYIAYNIGS SLNFKPY ; A ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DG n 1 2 DA n 1 3 DT n 1 4 DA n 1 5 DG n 1 6 DC n 1 7 DG n 1 8 DC n 1 9 DT n 1 10 DA n 1 11 DT n 1 12 DC n 2 1 DT n 2 2 DG n 2 3 DA n 2 4 DT n 2 5 DA n 2 6 DG n 2 7 DC n 2 8 DG n 2 9 DC n 2 10 DT n 2 11 DA n 2 12 DT n 2 13 DC n 3 1 MET n 3 2 ILE n 3 3 GLU n 3 4 ILE n 3 5 LYS n 3 6 ASP n 3 7 LYS n 3 8 GLN n 3 9 LEU n 3 10 THR n 3 11 GLY n 3 12 LEU n 3 13 ARG n 3 14 PHE n 3 15 ILE n 3 16 ASP n 3 17 LEU n 3 18 PHE n 3 19 ALA n 3 20 GLY n 3 21 LEU n 3 22 GLY n 3 23 GLY n 3 24 PHE n 3 25 ARG n 3 26 LEU n 3 27 ALA n 3 28 LEU n 3 29 GLU n 3 30 SER n 3 31 CYS n 3 32 GLY n 3 33 ALA n 3 34 GLU n 3 35 CYS n 3 36 VAL n 3 37 TYR n 3 38 SER n 3 39 ASN n 3 40 GLU n 3 41 TRP n 3 42 ASP n 3 43 LYS n 3 44 TYR n 3 45 ALA n 3 46 GLN n 3 47 GLU n 3 48 VAL n 3 49 TYR n 3 50 GLU n 3 51 MET n 3 52 ASN n 3 53 PHE n 3 54 GLY n 3 55 GLU n 3 56 LYS n 3 57 PRO n 3 58 GLU n 3 59 GLY n 3 60 ASP n 3 61 ILE n 3 62 THR n 3 63 GLN n 3 64 VAL n 3 65 ASN n 3 66 GLU n 3 67 LYS n 3 68 THR n 3 69 ILE n 3 70 PRO n 3 71 ASP n 3 72 HIS n 3 73 ASP n 3 74 ILE n 3 75 LEU n 3 76 CYS n 3 77 ALA n 3 78 GLY n 3 79 PHE n 3 80 PRO n 3 81 CYS n 3 82 GLN n 3 83 ALA n 3 84 PHE n 3 85 SER n 3 86 ILE n 3 87 SER n 3 88 GLY n 3 89 LYS n 3 90 GLN n 3 91 LYS n 3 92 GLY n 3 93 PHE n 3 94 GLU n 3 95 ASP n 3 96 SER n 3 97 ARG n 3 98 GLY n 3 99 THR n 3 100 LEU n 3 101 PHE n 3 102 PHE n 3 103 ASP n 3 104 ILE n 3 105 ALA n 3 106 ARG n 3 107 ILE n 3 108 VAL n 3 109 ARG n 3 110 GLU n 3 111 LYS n 3 112 LYS n 3 113 PRO n 3 114 LYS n 3 115 VAL n 3 116 VAL n 3 117 PHE n 3 118 MET n 3 119 GLN n 3 120 ASN n 3 121 VAL n 3 122 LYS n 3 123 ASN n 3 124 PHE n 3 125 ALA n 3 126 SER n 3 127 HIS n 3 128 ASP n 3 129 ASN n 3 130 GLY n 3 131 ASN n 3 132 THR n 3 133 LEU n 3 134 GLU n 3 135 VAL n 3 136 VAL n 3 137 LYS n 3 138 ASN n 3 139 THR n 3 140 MET n 3 141 ASN n 3 142 GLU n 3 143 LEU n 3 144 ASP n 3 145 TYR n 3 146 SER n 3 147 PHE n 3 148 HIS n 3 149 ALA n 3 150 LYS n 3 151 VAL n 3 152 LEU n 3 153 ASN n 3 154 ALA n 3 155 LEU n 3 156 ASP n 3 157 TYR n 3 158 GLY n 3 159 ILE n 3 160 PRO n 3 161 GLN n 3 162 LYS n 3 163 ARG n 3 164 GLU n 3 165 ARG n 3 166 ILE n 3 167 TYR n 3 168 MET n 3 169 ILE n 3 170 CYS n 3 171 PHE n 3 172 ARG n 3 173 ASN n 3 174 ASP n 3 175 LEU n 3 176 ASN n 3 177 ILE n 3 178 GLN n 3 179 ASN n 3 180 PHE n 3 181 GLN n 3 182 PHE n 3 183 PRO n 3 184 LYS n 3 185 PRO n 3 186 PHE n 3 187 GLU n 3 188 LEU n 3 189 ASN n 3 190 THR n 3 191 PHE n 3 192 VAL n 3 193 LYS n 3 194 ASP n 3 195 LEU n 3 196 LEU n 3 197 LEU n 3 198 PRO n 3 199 ASP n 3 200 SER n 3 201 GLU n 3 202 VAL n 3 203 GLU n 3 204 HIS n 3 205 LEU n 3 206 VAL n 3 207 ILE n 3 208 ASP n 3 209 ARG n 3 210 LYS n 3 211 ASP n 3 212 LEU n 3 213 VAL n 3 214 MET n 3 215 THR n 3 216 ASN n 3 217 GLN n 3 218 GLU n 3 219 ILE n 3 220 GLU n 3 221 GLN n 3 222 THR n 3 223 THR n 3 224 PRO n 3 225 LYS n 3 226 THR n 3 227 VAL n 3 228 ARG n 3 229 LEU n 3 230 GLY n 3 231 ILE n 3 232 VAL n 3 233 GLY n 3 234 LYS n 3 235 GLY n 3 236 GLY n 3 237 GLN n 3 238 GLY n 3 239 GLU n 3 240 ARG n 3 241 ILE n 3 242 TYR n 3 243 SER n 3 244 THR n 3 245 ARG n 3 246 GLY n 3 247 ILE n 3 248 ALA n 3 249 ILE n 3 250 THR n 3 251 LEU n 3 252 SER n 3 253 ALA n 3 254 TYR n 3 255 GLY n 3 256 GLY n 3 257 GLY n 3 258 ILE n 3 259 PHE n 3 260 ALA n 3 261 LYS n 3 262 THR n 3 263 GLY n 3 264 GLY n 3 265 TYR n 3 266 LEU n 3 267 VAL n 3 268 ASN n 3 269 GLY n 3 270 LYS n 3 271 THR n 3 272 ARG n 3 273 LYS n 3 274 LEU n 3 275 HIS n 3 276 PRO n 3 277 ARG n 3 278 GLU n 3 279 CYS n 3 280 ALA n 3 281 ARG n 3 282 VAL n 3 283 MET n 3 284 GLY n 3 285 TYR n 3 286 PRO n 3 287 ASP n 3 288 SER n 3 289 TYR n 3 290 LYS n 3 291 VAL n 3 292 HIS n 3 293 PRO n 3 294 SER n 3 295 THR n 3 296 SER n 3 297 GLN n 3 298 ALA n 3 299 TYR n 3 300 LYS n 3 301 GLN n 3 302 PHE n 3 303 GLY n 3 304 ASN n 3 305 SER n 3 306 VAL n 3 307 VAL n 3 308 ILE n 3 309 ASN n 3 310 VAL n 3 311 LEU n 3 312 GLN n 3 313 TYR n 3 314 ILE n 3 315 ALA n 3 316 TYR n 3 317 ASN n 3 318 ILE n 3 319 GLY n 3 320 SER n 3 321 SER n 3 322 LEU n 3 323 ASN n 3 324 PHE n 3 325 LYS n 3 326 PRO n 3 327 TYR n # _entity_src_gen.entity_id 3 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Haemophilus _entity_src_gen.pdbx_gene_src_gene hhaIM _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Haemophilus parahaemolyticus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 735 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pHSHW-5 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _pdbx_entity_src_syn.entity_id _pdbx_entity_src_syn.pdbx_src_id _pdbx_entity_src_syn.pdbx_alt_source_flag _pdbx_entity_src_syn.pdbx_beg_seq_num _pdbx_entity_src_syn.pdbx_end_seq_num _pdbx_entity_src_syn.organism_scientific _pdbx_entity_src_syn.organism_common_name _pdbx_entity_src_syn.ncbi_taxonomy_id _pdbx_entity_src_syn.details 1 1 sample ? ? ? ? ? 'Synthetic Construction' 2 1 sample ? ? ? ? ? 'Synthetic Construction' # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP MTH1_HAEPH P05102 3 ;MIEIKDKQLTGLRFIDLFAGLGGFRLALESCGAECVYSNEWDKYAQEVYEMNFGEKPEGDITQVNEKTIPDHDILCAGFP CQAFSISGKQKGFEDSRGTLFFDIARIVREKKPKVVFMENVKNFASHDNGNTLEVVKNTMNELDYSFHAKVLNALDYGIP QKRERIYMICFRNDLNIQNFQFPKPFELNTFVKDLLLPDSEVEHLVIDRKDLVMTNQEIEQTTPKTVRLGIVGKGGQGER IYSTRGIAITLSAYGGGIFAKTGGYLVNGKTRKLHPRECARVMGYPDSYKVHPSTSQAYKQFGNSVVINVLQYIAYNIGS SLNFKPY ; 1 ? 2 PDB 2ZCJ 2ZCJ 1 GATAGCGCTATC 402 ? 3 PDB 2ZCJ 2ZCJ 2 TGATAGCGCTATC 421 ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2ZCJ A 1 ? 327 ? P05102 1 ? 327 ? 1 327 2 2 2ZCJ C 1 ? 12 ? 2ZCJ 402 ? 413 ? 402 413 3 3 2ZCJ D 1 ? 13 ? 2ZCJ 421 ? 433 ? 421 433 # _struct_ref_seq_dif.align_id 1 _struct_ref_seq_dif.pdbx_pdb_id_code 2ZCJ _struct_ref_seq_dif.mon_id GLN _struct_ref_seq_dif.pdbx_pdb_strand_id A _struct_ref_seq_dif.seq_num 119 _struct_ref_seq_dif.pdbx_pdb_ins_code ? _struct_ref_seq_dif.pdbx_seq_db_name UNP _struct_ref_seq_dif.pdbx_seq_db_accession_code P05102 _struct_ref_seq_dif.db_mon_id GLU _struct_ref_seq_dif.pdbx_seq_db_seq_num 119 _struct_ref_seq_dif.details 'engineered mutation' _struct_ref_seq_dif.pdbx_auth_seq_num 119 _struct_ref_seq_dif.pdbx_ordinal 1 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SAH 'L-peptide linking' n S-ADENOSYL-L-HOMOCYSTEINE ? 'C14 H20 N6 O5 S' 384.411 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 2ZCJ _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 3.36 _exptl_crystal.density_percent_sol 63.38 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 290 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.0 _exptl_crystal_grow.pdbx_details '100 mM Sodium Citrate, 1.6-2.1 Ammonium Sulfate, pH 6.0, VAPOR DIFFUSION, HANGING DROP, temperature 290K' _exptl_crystal_grow.pdbx_pH_range . # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.details 1 1 1 'sodium citrate' ? ? ? 1 2 1 'ammonium sulfate' ? ? ? 1 3 1 H2O ? ? ? 1 4 2 'sodium citrate' ? ? ? 1 5 2 'ammonium sulfate' ? ? ? 1 6 2 H2O ? ? ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type 'MAR scanner 180 mm plate' _diffrn_detector.pdbx_collection_date 2006-08-01 _diffrn_detector.details mirrors # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength . _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type 'RIGAKU RU200' _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 2ZCJ _reflns.observed_criterion_sigma_F 2.0 _reflns.observed_criterion_sigma_I 2.0 _reflns.d_resolution_high 2.50 _reflns.d_resolution_low 10.0 _reflns.number_all ? _reflns.number_obs 18897 _reflns.percent_possible_obs ? _reflns.pdbx_Rmerge_I_obs 0.106 _reflns.pdbx_Rsym_value 0.071 _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 2.60 _reflns_shell.d_res_low 2.75 _reflns_shell.percent_possible_all ? _reflns_shell.Rmerge_I_obs 0.365 _reflns_shell.pdbx_Rsym_value 0.509 _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 2691 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 2ZCJ _refine.ls_d_res_high 2.75 _refine.ls_d_res_low 8.64 _refine.pdbx_ls_sigma_F 2.0 _refine.pdbx_ls_sigma_I 2.0 _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 16061 _refine.ls_number_reflns_R_free ? _refine.ls_percent_reflns_obs ? _refine.ls_R_factor_all ? _refine.ls_R_factor_obs ? _refine.ls_R_factor_R_work 0.218 _refine.ls_R_factor_R_free 0.266 _refine.ls_redundancy_reflns_obs ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_method_to_determine_struct 'simulation annealing' _refine.pdbx_starting_model ? _refine.pdbx_ls_cross_valid_method ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_stereochemistry_target_values ? _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.pdbx_isotropic_thermal_model ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.details ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_overall_ESU_R ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2606 _refine_hist.pdbx_number_atoms_nucleic_acid 506 _refine_hist.pdbx_number_atoms_ligand 26 _refine_hist.number_atoms_solvent 72 _refine_hist.number_atoms_total 3210 _refine_hist.d_res_high 2.75 _refine_hist.d_res_low 8.64 # _refine_ls_shell.pdbx_total_number_of_bins_used ? _refine_ls_shell.d_res_high 2.75 _refine_ls_shell.d_res_low 2.78 _refine_ls_shell.number_reflns_R_work ? _refine_ls_shell.R_factor_R_work 0.293 _refine_ls_shell.percent_reflns_obs ? _refine_ls_shell.R_factor_R_free 0.340 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free ? _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs 53 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 2ZCJ _struct.title 'Ternary structure of the Glu119Gln M.HhaI, C5-Cytosine DNA methyltransferase, with unmodified DNA and AdoHcy' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2ZCJ _struct_keywords.pdbx_keywords TRANSFERASE/DNA _struct_keywords.text 'Alpha and beta, 3-layer Sandwich, Methyltransferase, Restriction system, S-adenosyl-L-methionine, TRANSFERASE-DNA COMPLEX' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 5 ? F N N 5 ? G N N 5 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLY C 22 ? SER C 30 ? GLY A 22 SER A 30 1 ? 9 HELX_P HELX_P2 2 ASP C 42 ? GLY C 54 ? ASP A 42 GLY A 54 1 ? 13 HELX_P HELX_P3 3 ASP C 60 ? VAL C 64 ? ASP A 60 VAL A 64 5 ? 5 HELX_P HELX_P4 4 ASN C 65 ? ILE C 69 ? ASN A 65 ILE A 69 5 ? 5 HELX_P HELX_P5 5 LYS C 91 ? GLY C 98 ? LYS A 91 GLY A 98 5 ? 8 HELX_P HELX_P6 6 THR C 99 ? LYS C 112 ? THR A 99 LYS A 112 1 ? 14 HELX_P HELX_P7 7 LYS C 122 ? HIS C 127 ? LYS A 122 HIS A 127 1 ? 6 HELX_P HELX_P8 8 GLY C 130 ? LEU C 143 ? GLY A 130 LEU A 143 1 ? 14 HELX_P HELX_P9 9 LEU C 155 ? TYR C 157 ? LEU A 155 TYR A 157 5 ? 3 HELX_P HELX_P10 10 PHE C 191 ? LEU C 196 ? PHE A 191 LEU A 196 1 ? 6 HELX_P HELX_P11 11 PRO C 198 ? GLU C 203 ? PRO A 198 GLU A 203 1 ? 6 HELX_P HELX_P12 12 HIS C 275 ? MET C 283 ? HIS A 275 MET A 283 1 ? 9 HELX_P HELX_P13 13 SER C 294 ? ASN C 304 ? SER A 294 ASN A 304 1 ? 11 HELX_P HELX_P14 14 VAL C 307 ? PHE C 324 ? VAL A 307 PHE A 324 1 ? 18 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? A DG 1 N1 ? ? ? 1_555 B DC 13 N3 ? ? C DG 402 D DC 433 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DG 1 N2 ? ? ? 1_555 B DC 13 O2 ? ? C DG 402 D DC 433 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DG 1 O6 ? ? ? 1_555 B DC 13 N4 ? ? C DG 402 D DC 433 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DA 2 N1 ? ? ? 1_555 B DT 12 N3 ? ? C DA 403 D DT 432 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DA 2 N6 ? ? ? 1_555 B DT 12 O4 ? ? C DA 403 D DT 432 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DT 3 N3 ? ? ? 1_555 B DA 11 N1 ? ? C DT 404 D DA 431 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DT 3 O4 ? ? ? 1_555 B DA 11 N6 ? ? C DT 404 D DA 431 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DA 4 N1 ? ? ? 1_555 B DT 10 N3 ? ? C DA 405 D DT 430 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DA 4 N6 ? ? ? 1_555 B DT 10 O4 ? ? C DA 405 D DT 430 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DG 5 N1 ? ? ? 1_555 B DC 9 N3 ? ? C DG 406 D DC 429 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DG 5 N2 ? ? ? 1_555 B DC 9 O2 ? ? C DG 406 D DC 429 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DG 5 O6 ? ? ? 1_555 B DC 9 N4 ? ? C DG 406 D DC 429 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DC 6 N3 ? ? ? 1_555 B DG 8 N1 ? ? C DC 407 D DG 428 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DC 6 N4 ? ? ? 1_555 B DG 8 O6 ? ? C DC 407 D DG 428 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DC 6 O2 ? ? ? 1_555 B DG 8 N2 ? ? C DC 407 D DG 428 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DC 8 N3 ? ? ? 1_555 B DG 6 N1 ? ? C DC 409 D DG 426 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DC 8 N4 ? ? ? 1_555 B DG 6 O6 ? ? C DC 409 D DG 426 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DC 8 O2 ? ? ? 1_555 B DG 6 N2 ? ? C DC 409 D DG 426 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DT 9 N3 ? ? ? 1_555 B DA 5 N1 ? ? C DT 410 D DA 425 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DT 9 O4 ? ? ? 1_555 B DA 5 N6 ? ? C DT 410 D DA 425 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A DA 10 N1 ? ? ? 1_555 B DT 4 N3 ? ? C DA 411 D DT 424 1_555 ? ? ? ? ? ? 'DA-DT PAIR' ? ? ? hydrog22 hydrog ? ? A DT 11 N3 ? ? ? 1_555 B DA 3 N1 ? ? C DT 412 D DA 423 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A DT 11 O4 ? ? ? 1_555 B DA 3 N6 ? ? C DT 412 D DA 423 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A DC 12 N3 ? ? ? 1_555 B DG 2 N1 ? ? C DC 413 D DG 422 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A DC 12 N4 ? ? ? 1_555 B DG 2 O6 ? ? C DC 413 D DG 422 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A DC 12 O2 ? ? ? 1_555 B DG 2 N2 ? ? C DC 413 D DG 422 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 6 ? B ? 6 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? parallel A 2 3 ? parallel A 3 4 ? parallel A 4 5 ? anti-parallel A 5 6 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? parallel B 4 5 ? anti-parallel B 5 6 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 GLU C 34 ? SER C 38 ? GLU A 34 SER A 38 A 2 ARG C 13 ? LEU C 17 ? ARG A 13 LEU A 17 A 3 ILE C 74 ? GLY C 78 ? ILE A 74 GLY A 78 A 4 VAL C 115 ? VAL C 121 ? VAL A 115 VAL A 121 A 5 GLU C 164 ? PHE C 171 ? GLU A 164 PHE A 171 A 6 HIS C 148 ? ASN C 153 ? HIS A 148 ASN A 153 B 1 VAL C 206 ? ILE C 207 ? VAL A 206 ILE A 207 B 2 LYS C 270 ? LYS C 273 ? LYS A 270 LYS A 273 B 3 GLY C 264 ? VAL C 267 ? GLY A 264 VAL A 267 B 4 ARG C 240 ? SER C 243 ? ARG A 240 SER A 243 B 5 ARG C 228 ? ILE C 231 ? ARG A 228 ILE A 231 B 6 VAL C 213 ? MET C 214 ? VAL A 213 MET A 214 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O TYR C 37 ? O TYR A 37 N ASP C 16 ? N ASP A 16 A 2 3 N ILE C 15 ? N ILE A 15 O CYS C 76 ? O CYS A 76 A 3 4 N LEU C 75 ? N LEU A 75 O PHE C 117 ? O PHE A 117 A 4 5 N VAL C 116 ? N VAL A 116 O CYS C 170 ? O CYS A 170 A 5 6 O ILE C 169 ? O ILE A 169 N HIS C 148 ? N HIS A 148 B 1 2 N ILE C 207 ? N ILE A 207 O THR C 271 ? O THR A 271 B 2 3 O LYS C 270 ? O LYS A 270 N VAL C 267 ? N VAL A 267 B 3 4 O GLY C 264 ? O GLY A 264 N TYR C 242 ? N TYR A 242 B 4 5 O ILE C 241 ? O ILE A 241 N LEU C 229 ? N LEU A 229 B 5 6 O ILE C 231 ? O ILE A 231 N VAL C 213 ? N VAL A 213 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id A _struct_site.pdbx_auth_comp_id SAH _struct_site.pdbx_auth_seq_id 328 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 22 _struct_site.details 'BINDING SITE FOR RESIDUE SAH A 328' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 22 PHE C 18 ? PHE A 18 . ? 1_555 ? 2 AC1 22 ALA C 19 ? ALA A 19 . ? 1_555 ? 3 AC1 22 GLY C 20 ? GLY A 20 . ? 1_555 ? 4 AC1 22 LEU C 21 ? LEU A 21 . ? 1_555 ? 5 AC1 22 GLY C 23 ? GLY A 23 . ? 1_555 ? 6 AC1 22 PHE C 24 ? PHE A 24 . ? 1_555 ? 7 AC1 22 ASN C 39 ? ASN A 39 . ? 1_555 ? 8 AC1 22 GLU C 40 ? GLU A 40 . ? 1_555 ? 9 AC1 22 TRP C 41 ? TRP A 41 . ? 1_555 ? 10 AC1 22 ASP C 60 ? ASP A 60 . ? 1_555 ? 11 AC1 22 ILE C 61 ? ILE A 61 . ? 1_555 ? 12 AC1 22 GLY C 78 ? GLY A 78 . ? 1_555 ? 13 AC1 22 PRO C 80 ? PRO A 80 . ? 1_555 ? 14 AC1 22 TYR C 285 ? TYR A 285 . ? 1_555 ? 15 AC1 22 ASN C 304 ? ASN A 304 . ? 1_555 ? 16 AC1 22 SER C 305 ? SER A 305 . ? 1_555 ? 17 AC1 22 VAL C 306 ? VAL A 306 . ? 1_555 ? 18 AC1 22 HOH G . ? HOH A 504 . ? 1_555 ? 19 AC1 22 HOH G . ? HOH A 507 . ? 1_555 ? 20 AC1 22 HOH G . ? HOH A 513 . ? 1_555 ? 21 AC1 22 HOH G . ? HOH A 516 . ? 1_555 ? 22 AC1 22 HOH G . ? HOH A 574 . ? 1_555 ? # _database_PDB_matrix.entry_id 2ZCJ _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2ZCJ _atom_sites.fract_transf_matrix[1][1] 0.010155 _atom_sites.fract_transf_matrix[1][2] 0.005863 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.011726 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.003109 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DG 1 402 402 DG GUA C . n A 1 2 DA 2 403 403 DA ADE C . n A 1 3 DT 3 404 404 DT THY C . n A 1 4 DA 4 405 405 DA ADE C . n A 1 5 DG 5 406 406 DG GUA C . n A 1 6 DC 6 407 407 DC CYT C . n A 1 7 DG 7 408 408 DG GUA C . n A 1 8 DC 8 409 409 DC CYT C . n A 1 9 DT 9 410 410 DT THY C . n A 1 10 DA 10 411 411 DA ADE C . n A 1 11 DT 11 412 412 DT THY C . n A 1 12 DC 12 413 413 DC CYT C . n B 2 1 DT 1 421 421 DT THY D . n B 2 2 DG 2 422 422 DG GUA D . n B 2 3 DA 3 423 423 DA ADE D . n B 2 4 DT 4 424 424 DT THY D . n B 2 5 DA 5 425 425 DA ADE D . n B 2 6 DG 6 426 426 DG GUA D . n B 2 7 DC 7 427 427 DC CYT D . n B 2 8 DG 8 428 428 DG GUA D . n B 2 9 DC 9 429 429 DC CYT D . n B 2 10 DT 10 430 430 DT THY D . n B 2 11 DA 11 431 431 DA ADE D . n B 2 12 DT 12 432 432 DT THY D . n B 2 13 DC 13 433 433 DC CYT D . n C 3 1 MET 1 1 1 MET MET A . n C 3 2 ILE 2 2 2 ILE ILE A . n C 3 3 GLU 3 3 3 GLU GLU A . n C 3 4 ILE 4 4 4 ILE ILE A . n C 3 5 LYS 5 5 5 LYS LYS A . n C 3 6 ASP 6 6 6 ASP ASP A . n C 3 7 LYS 7 7 7 LYS LYS A . n C 3 8 GLN 8 8 8 GLN GLN A . n C 3 9 LEU 9 9 9 LEU LEU A . n C 3 10 THR 10 10 10 THR THR A . n C 3 11 GLY 11 11 11 GLY GLY A . n C 3 12 LEU 12 12 12 LEU LEU A . n C 3 13 ARG 13 13 13 ARG ARG A . n C 3 14 PHE 14 14 14 PHE PHE A . n C 3 15 ILE 15 15 15 ILE ILE A . n C 3 16 ASP 16 16 16 ASP ASP A . n C 3 17 LEU 17 17 17 LEU LEU A . n C 3 18 PHE 18 18 18 PHE PHE A . n C 3 19 ALA 19 19 19 ALA ALA A . n C 3 20 GLY 20 20 20 GLY GLY A . n C 3 21 LEU 21 21 21 LEU LEU A . n C 3 22 GLY 22 22 22 GLY GLY A . n C 3 23 GLY 23 23 23 GLY GLY A . n C 3 24 PHE 24 24 24 PHE PHE A . n C 3 25 ARG 25 25 25 ARG ARG A . n C 3 26 LEU 26 26 26 LEU LEU A . n C 3 27 ALA 27 27 27 ALA ALA A . n C 3 28 LEU 28 28 28 LEU LEU A . n C 3 29 GLU 29 29 29 GLU GLU A . n C 3 30 SER 30 30 30 SER SER A . n C 3 31 CYS 31 31 31 CYS CYS A . n C 3 32 GLY 32 32 32 GLY GLY A . n C 3 33 ALA 33 33 33 ALA ALA A . n C 3 34 GLU 34 34 34 GLU GLU A . n C 3 35 CYS 35 35 35 CYS CYS A . n C 3 36 VAL 36 36 36 VAL VAL A . n C 3 37 TYR 37 37 37 TYR TYR A . n C 3 38 SER 38 38 38 SER SER A . n C 3 39 ASN 39 39 39 ASN ASN A . n C 3 40 GLU 40 40 40 GLU GLU A . n C 3 41 TRP 41 41 41 TRP TRP A . n C 3 42 ASP 42 42 42 ASP ASP A . n C 3 43 LYS 43 43 43 LYS LYS A . n C 3 44 TYR 44 44 44 TYR TYR A . n C 3 45 ALA 45 45 45 ALA ALA A . n C 3 46 GLN 46 46 46 GLN GLN A . n C 3 47 GLU 47 47 47 GLU GLU A . n C 3 48 VAL 48 48 48 VAL VAL A . n C 3 49 TYR 49 49 49 TYR TYR A . n C 3 50 GLU 50 50 50 GLU GLU A . n C 3 51 MET 51 51 51 MET MET A . n C 3 52 ASN 52 52 52 ASN ASN A . n C 3 53 PHE 53 53 53 PHE PHE A . n C 3 54 GLY 54 54 54 GLY GLY A . n C 3 55 GLU 55 55 55 GLU GLU A . n C 3 56 LYS 56 56 56 LYS LYS A . n C 3 57 PRO 57 57 57 PRO PRO A . n C 3 58 GLU 58 58 58 GLU GLU A . n C 3 59 GLY 59 59 59 GLY GLY A . n C 3 60 ASP 60 60 60 ASP ASP A . n C 3 61 ILE 61 61 61 ILE ILE A . n C 3 62 THR 62 62 62 THR THR A . n C 3 63 GLN 63 63 63 GLN GLN A . n C 3 64 VAL 64 64 64 VAL VAL A . n C 3 65 ASN 65 65 65 ASN ASN A . n C 3 66 GLU 66 66 66 GLU GLU A . n C 3 67 LYS 67 67 67 LYS LYS A . n C 3 68 THR 68 68 68 THR THR A . n C 3 69 ILE 69 69 69 ILE ILE A . n C 3 70 PRO 70 70 70 PRO PRO A . n C 3 71 ASP 71 71 71 ASP ASP A . n C 3 72 HIS 72 72 72 HIS HIS A . n C 3 73 ASP 73 73 73 ASP ASP A . n C 3 74 ILE 74 74 74 ILE ILE A . n C 3 75 LEU 75 75 75 LEU LEU A . n C 3 76 CYS 76 76 76 CYS CYS A . n C 3 77 ALA 77 77 77 ALA ALA A . n C 3 78 GLY 78 78 78 GLY GLY A . n C 3 79 PHE 79 79 79 PHE PHE A . n C 3 80 PRO 80 80 80 PRO PRO A . n C 3 81 CYS 81 81 81 CYS CYS A . n C 3 82 GLN 82 82 82 GLN GLN A . n C 3 83 ALA 83 83 83 ALA ALA A . n C 3 84 PHE 84 84 84 PHE PHE A . n C 3 85 SER 85 85 85 SER SER A . n C 3 86 ILE 86 86 86 ILE ILE A . n C 3 87 SER 87 87 87 SER SER A . n C 3 88 GLY 88 88 88 GLY GLY A . n C 3 89 LYS 89 89 89 LYS LYS A . n C 3 90 GLN 90 90 90 GLN GLN A . n C 3 91 LYS 91 91 91 LYS LYS A . n C 3 92 GLY 92 92 92 GLY GLY A . n C 3 93 PHE 93 93 93 PHE PHE A . n C 3 94 GLU 94 94 94 GLU GLU A . n C 3 95 ASP 95 95 95 ASP ASP A . n C 3 96 SER 96 96 96 SER SER A . n C 3 97 ARG 97 97 97 ARG ARG A . n C 3 98 GLY 98 98 98 GLY GLY A . n C 3 99 THR 99 99 99 THR THR A . n C 3 100 LEU 100 100 100 LEU LEU A . n C 3 101 PHE 101 101 101 PHE PHE A . n C 3 102 PHE 102 102 102 PHE PHE A . n C 3 103 ASP 103 103 103 ASP ASP A . n C 3 104 ILE 104 104 104 ILE ILE A . n C 3 105 ALA 105 105 105 ALA ALA A . n C 3 106 ARG 106 106 106 ARG ARG A . n C 3 107 ILE 107 107 107 ILE ILE A . n C 3 108 VAL 108 108 108 VAL VAL A . n C 3 109 ARG 109 109 109 ARG ARG A . n C 3 110 GLU 110 110 110 GLU GLU A . n C 3 111 LYS 111 111 111 LYS LYS A . n C 3 112 LYS 112 112 112 LYS LYS A . n C 3 113 PRO 113 113 113 PRO PRO A . n C 3 114 LYS 114 114 114 LYS LYS A . n C 3 115 VAL 115 115 115 VAL VAL A . n C 3 116 VAL 116 116 116 VAL VAL A . n C 3 117 PHE 117 117 117 PHE PHE A . n C 3 118 MET 118 118 118 MET MET A . n C 3 119 GLN 119 119 119 GLN GLN A . n C 3 120 ASN 120 120 120 ASN ASN A . n C 3 121 VAL 121 121 121 VAL VAL A . n C 3 122 LYS 122 122 122 LYS LYS A . n C 3 123 ASN 123 123 123 ASN ASN A . n C 3 124 PHE 124 124 124 PHE PHE A . n C 3 125 ALA 125 125 125 ALA ALA A . n C 3 126 SER 126 126 126 SER SER A . n C 3 127 HIS 127 127 127 HIS HIS A . n C 3 128 ASP 128 128 128 ASP ASP A . n C 3 129 ASN 129 129 129 ASN ASN A . n C 3 130 GLY 130 130 130 GLY GLY A . n C 3 131 ASN 131 131 131 ASN ASN A . n C 3 132 THR 132 132 132 THR THR A . n C 3 133 LEU 133 133 133 LEU LEU A . n C 3 134 GLU 134 134 134 GLU GLU A . n C 3 135 VAL 135 135 135 VAL VAL A . n C 3 136 VAL 136 136 136 VAL VAL A . n C 3 137 LYS 137 137 137 LYS LYS A . n C 3 138 ASN 138 138 138 ASN ASN A . n C 3 139 THR 139 139 139 THR THR A . n C 3 140 MET 140 140 140 MET MET A . n C 3 141 ASN 141 141 141 ASN ASN A . n C 3 142 GLU 142 142 142 GLU GLU A . n C 3 143 LEU 143 143 143 LEU LEU A . n C 3 144 ASP 144 144 144 ASP ASP A . n C 3 145 TYR 145 145 145 TYR TYR A . n C 3 146 SER 146 146 146 SER SER A . n C 3 147 PHE 147 147 147 PHE PHE A . n C 3 148 HIS 148 148 148 HIS HIS A . n C 3 149 ALA 149 149 149 ALA ALA A . n C 3 150 LYS 150 150 150 LYS LYS A . n C 3 151 VAL 151 151 151 VAL VAL A . n C 3 152 LEU 152 152 152 LEU LEU A . n C 3 153 ASN 153 153 153 ASN ASN A . n C 3 154 ALA 154 154 154 ALA ALA A . n C 3 155 LEU 155 155 155 LEU LEU A . n C 3 156 ASP 156 156 156 ASP ASP A . n C 3 157 TYR 157 157 157 TYR TYR A . n C 3 158 GLY 158 158 158 GLY GLY A . n C 3 159 ILE 159 159 159 ILE ILE A . n C 3 160 PRO 160 160 160 PRO PRO A . n C 3 161 GLN 161 161 161 GLN GLN A . n C 3 162 LYS 162 162 162 LYS LYS A . n C 3 163 ARG 163 163 163 ARG ARG A . n C 3 164 GLU 164 164 164 GLU GLU A . n C 3 165 ARG 165 165 165 ARG ARG A . n C 3 166 ILE 166 166 166 ILE ILE A . n C 3 167 TYR 167 167 167 TYR TYR A . n C 3 168 MET 168 168 168 MET MET A . n C 3 169 ILE 169 169 169 ILE ILE A . n C 3 170 CYS 170 170 170 CYS CYS A . n C 3 171 PHE 171 171 171 PHE PHE A . n C 3 172 ARG 172 172 172 ARG ARG A . n C 3 173 ASN 173 173 173 ASN ASN A . n C 3 174 ASP 174 174 174 ASP ASP A . n C 3 175 LEU 175 175 175 LEU LEU A . n C 3 176 ASN 176 176 176 ASN ASN A . n C 3 177 ILE 177 177 177 ILE ILE A . n C 3 178 GLN 178 178 178 GLN GLN A . n C 3 179 ASN 179 179 179 ASN ASN A . n C 3 180 PHE 180 180 180 PHE PHE A . n C 3 181 GLN 181 181 181 GLN GLN A . n C 3 182 PHE 182 182 182 PHE PHE A . n C 3 183 PRO 183 183 183 PRO PRO A . n C 3 184 LYS 184 184 184 LYS LYS A . n C 3 185 PRO 185 185 185 PRO PRO A . n C 3 186 PHE 186 186 186 PHE PHE A . n C 3 187 GLU 187 187 187 GLU GLU A . n C 3 188 LEU 188 188 188 LEU LEU A . n C 3 189 ASN 189 189 189 ASN ASN A . n C 3 190 THR 190 190 190 THR THR A . n C 3 191 PHE 191 191 191 PHE PHE A . n C 3 192 VAL 192 192 192 VAL VAL A . n C 3 193 LYS 193 193 193 LYS LYS A . n C 3 194 ASP 194 194 194 ASP ASP A . n C 3 195 LEU 195 195 195 LEU LEU A . n C 3 196 LEU 196 196 196 LEU LEU A . n C 3 197 LEU 197 197 197 LEU LEU A . n C 3 198 PRO 198 198 198 PRO PRO A . n C 3 199 ASP 199 199 199 ASP ASP A . n C 3 200 SER 200 200 200 SER SER A . n C 3 201 GLU 201 201 201 GLU GLU A . n C 3 202 VAL 202 202 202 VAL VAL A . n C 3 203 GLU 203 203 203 GLU GLU A . n C 3 204 HIS 204 204 204 HIS HIS A . n C 3 205 LEU 205 205 205 LEU LEU A . n C 3 206 VAL 206 206 206 VAL VAL A . n C 3 207 ILE 207 207 207 ILE ILE A . n C 3 208 ASP 208 208 208 ASP ASP A . n C 3 209 ARG 209 209 209 ARG ARG A . n C 3 210 LYS 210 210 210 LYS LYS A . n C 3 211 ASP 211 211 211 ASP ASP A . n C 3 212 LEU 212 212 212 LEU LEU A . n C 3 213 VAL 213 213 213 VAL VAL A . n C 3 214 MET 214 214 214 MET MET A . n C 3 215 THR 215 215 215 THR THR A . n C 3 216 ASN 216 216 216 ASN ASN A . n C 3 217 GLN 217 217 217 GLN GLN A . n C 3 218 GLU 218 218 218 GLU GLU A . n C 3 219 ILE 219 219 219 ILE ILE A . n C 3 220 GLU 220 220 220 GLU GLU A . n C 3 221 GLN 221 221 221 GLN GLN A . n C 3 222 THR 222 222 222 THR THR A . n C 3 223 THR 223 223 223 THR THR A . n C 3 224 PRO 224 224 224 PRO PRO A . n C 3 225 LYS 225 225 225 LYS LYS A . n C 3 226 THR 226 226 226 THR THR A . n C 3 227 VAL 227 227 227 VAL VAL A . n C 3 228 ARG 228 228 228 ARG ARG A . n C 3 229 LEU 229 229 229 LEU LEU A . n C 3 230 GLY 230 230 230 GLY GLY A . n C 3 231 ILE 231 231 231 ILE ILE A . n C 3 232 VAL 232 232 232 VAL VAL A . n C 3 233 GLY 233 233 233 GLY GLY A . n C 3 234 LYS 234 234 234 LYS LYS A . n C 3 235 GLY 235 235 235 GLY GLY A . n C 3 236 GLY 236 236 236 GLY GLY A . n C 3 237 GLN 237 237 237 GLN GLN A . n C 3 238 GLY 238 238 238 GLY GLY A . n C 3 239 GLU 239 239 239 GLU GLU A . n C 3 240 ARG 240 240 240 ARG ARG A . n C 3 241 ILE 241 241 241 ILE ILE A . n C 3 242 TYR 242 242 242 TYR TYR A . n C 3 243 SER 243 243 243 SER SER A . n C 3 244 THR 244 244 244 THR THR A . n C 3 245 ARG 245 245 245 ARG ARG A . n C 3 246 GLY 246 246 246 GLY GLY A . n C 3 247 ILE 247 247 247 ILE ILE A . n C 3 248 ALA 248 248 248 ALA ALA A . n C 3 249 ILE 249 249 249 ILE ILE A . n C 3 250 THR 250 250 250 THR THR A . n C 3 251 LEU 251 251 251 LEU LEU A . n C 3 252 SER 252 252 252 SER SER A . n C 3 253 ALA 253 253 253 ALA ALA A . n C 3 254 TYR 254 254 254 TYR TYR A . n C 3 255 GLY 255 255 255 GLY GLY A . n C 3 256 GLY 256 256 256 GLY GLY A . n C 3 257 GLY 257 257 257 GLY GLY A . n C 3 258 ILE 258 258 258 ILE ILE A . n C 3 259 PHE 259 259 259 PHE PHE A . n C 3 260 ALA 260 260 260 ALA ALA A . n C 3 261 LYS 261 261 261 LYS LYS A . n C 3 262 THR 262 262 262 THR THR A . n C 3 263 GLY 263 263 263 GLY GLY A . n C 3 264 GLY 264 264 264 GLY GLY A . n C 3 265 TYR 265 265 265 TYR TYR A . n C 3 266 LEU 266 266 266 LEU LEU A . n C 3 267 VAL 267 267 267 VAL VAL A . n C 3 268 ASN 268 268 268 ASN ASN A . n C 3 269 GLY 269 269 269 GLY GLY A . n C 3 270 LYS 270 270 270 LYS LYS A . n C 3 271 THR 271 271 271 THR THR A . n C 3 272 ARG 272 272 272 ARG ARG A . n C 3 273 LYS 273 273 273 LYS LYS A . n C 3 274 LEU 274 274 274 LEU LEU A . n C 3 275 HIS 275 275 275 HIS HIS A . n C 3 276 PRO 276 276 276 PRO PRO A . n C 3 277 ARG 277 277 277 ARG ARG A . n C 3 278 GLU 278 278 278 GLU GLU A . n C 3 279 CYS 279 279 279 CYS CYS A . n C 3 280 ALA 280 280 280 ALA ALA A . n C 3 281 ARG 281 281 281 ARG ARG A . n C 3 282 VAL 282 282 282 VAL VAL A . n C 3 283 MET 283 283 283 MET MET A . n C 3 284 GLY 284 284 284 GLY GLY A . n C 3 285 TYR 285 285 285 TYR TYR A . n C 3 286 PRO 286 286 286 PRO PRO A . n C 3 287 ASP 287 287 287 ASP ASP A . n C 3 288 SER 288 288 288 SER SER A . n C 3 289 TYR 289 289 289 TYR TYR A . n C 3 290 LYS 290 290 290 LYS LYS A . n C 3 291 VAL 291 291 291 VAL VAL A . n C 3 292 HIS 292 292 292 HIS HIS A . n C 3 293 PRO 293 293 293 PRO PRO A . n C 3 294 SER 294 294 294 SER SER A . n C 3 295 THR 295 295 295 THR THR A . n C 3 296 SER 296 296 296 SER SER A . n C 3 297 GLN 297 297 297 GLN GLN A . n C 3 298 ALA 298 298 298 ALA ALA A . n C 3 299 TYR 299 299 299 TYR TYR A . n C 3 300 LYS 300 300 300 LYS LYS A . n C 3 301 GLN 301 301 301 GLN GLN A . n C 3 302 PHE 302 302 302 PHE PHE A . n C 3 303 GLY 303 303 303 GLY GLY A . n C 3 304 ASN 304 304 304 ASN ASN A . n C 3 305 SER 305 305 305 SER SER A . n C 3 306 VAL 306 306 306 VAL VAL A . n C 3 307 VAL 307 307 307 VAL VAL A . n C 3 308 ILE 308 308 308 ILE ILE A . n C 3 309 ASN 309 309 309 ASN ASN A . n C 3 310 VAL 310 310 310 VAL VAL A . n C 3 311 LEU 311 311 311 LEU LEU A . n C 3 312 GLN 312 312 312 GLN GLN A . n C 3 313 TYR 313 313 313 TYR TYR A . n C 3 314 ILE 314 314 314 ILE ILE A . n C 3 315 ALA 315 315 315 ALA ALA A . n C 3 316 TYR 316 316 316 TYR TYR A . n C 3 317 ASN 317 317 317 ASN ASN A . n C 3 318 ILE 318 318 318 ILE ILE A . n C 3 319 GLY 319 319 319 GLY GLY A . n C 3 320 SER 320 320 320 SER SER A . n C 3 321 SER 321 321 321 SER SER A . n C 3 322 LEU 322 322 322 LEU LEU A . n C 3 323 ASN 323 323 323 ASN ASN A . n C 3 324 PHE 324 324 324 PHE PHE A . n C 3 325 LYS 325 325 325 LYS LYS A . n C 3 326 PRO 326 326 326 PRO PRO A . n C 3 327 TYR 327 327 327 TYR TYR A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 SAH 1 328 328 SAH SAH A . E 5 HOH 1 518 518 HOH HOH C . E 5 HOH 2 548 548 HOH HOH C . E 5 HOH 3 550 550 HOH HOH C . E 5 HOH 4 554 554 HOH HOH C . E 5 HOH 5 566 566 HOH HOH C . E 5 HOH 6 570 570 HOH HOH C . E 5 HOH 7 571 571 HOH HOH C . E 5 HOH 8 572 572 HOH HOH C . F 5 HOH 1 539 539 HOH HOH D . F 5 HOH 2 546 546 HOH HOH D . F 5 HOH 3 553 553 HOH HOH D . F 5 HOH 4 575 575 HOH HOH D . F 5 HOH 5 581 581 HOH HOH D . G 5 HOH 1 501 501 HOH HOH A . G 5 HOH 2 502 502 HOH HOH A . G 5 HOH 3 503 503 HOH HOH A . G 5 HOH 4 504 504 HOH HOH A . G 5 HOH 5 505 505 HOH HOH A . G 5 HOH 6 506 506 HOH HOH A . G 5 HOH 7 507 507 HOH HOH A . G 5 HOH 8 508 508 HOH HOH A . G 5 HOH 9 509 509 HOH HOH A . G 5 HOH 10 510 510 HOH HOH A . G 5 HOH 11 511 511 HOH HOH A . G 5 HOH 12 512 512 HOH HOH A . G 5 HOH 13 513 513 HOH HOH A . G 5 HOH 14 514 514 HOH HOH A . G 5 HOH 15 515 515 HOH HOH A . G 5 HOH 16 516 516 HOH HOH A . G 5 HOH 17 517 517 HOH HOH A . G 5 HOH 18 519 519 HOH HOH A . G 5 HOH 19 520 520 HOH HOH A . G 5 HOH 20 521 521 HOH HOH A . G 5 HOH 21 522 522 HOH HOH A . G 5 HOH 22 523 523 HOH HOH A . G 5 HOH 23 524 524 HOH HOH A . G 5 HOH 24 525 525 HOH HOH A . G 5 HOH 25 526 526 HOH HOH A . G 5 HOH 26 527 527 HOH HOH A . G 5 HOH 27 528 528 HOH HOH A . G 5 HOH 28 529 529 HOH HOH A . G 5 HOH 29 530 530 HOH HOH A . G 5 HOH 30 531 531 HOH HOH A . G 5 HOH 31 532 532 HOH HOH A . G 5 HOH 32 533 533 HOH HOH A . G 5 HOH 33 534 534 HOH HOH A . G 5 HOH 34 535 535 HOH HOH A . G 5 HOH 35 536 536 HOH HOH A . G 5 HOH 36 537 537 HOH HOH A . G 5 HOH 37 538 538 HOH HOH A . G 5 HOH 38 540 540 HOH HOH A . G 5 HOH 39 541 541 HOH HOH A . G 5 HOH 40 542 542 HOH HOH A . G 5 HOH 41 544 544 HOH HOH A . G 5 HOH 42 547 547 HOH HOH A . G 5 HOH 43 549 549 HOH HOH A . G 5 HOH 44 551 551 HOH HOH A . G 5 HOH 45 555 555 HOH HOH A . G 5 HOH 46 556 556 HOH HOH A . G 5 HOH 47 557 557 HOH HOH A . G 5 HOH 48 558 558 HOH HOH A . G 5 HOH 49 559 559 HOH HOH A . G 5 HOH 50 560 560 HOH HOH A . G 5 HOH 51 561 561 HOH HOH A . G 5 HOH 52 562 562 HOH HOH A . G 5 HOH 53 564 564 HOH HOH A . G 5 HOH 54 565 565 HOH HOH A . G 5 HOH 55 569 569 HOH HOH A . G 5 HOH 56 573 573 HOH HOH A . G 5 HOH 57 574 574 HOH HOH A . G 5 HOH 58 578 578 HOH HOH A . G 5 HOH 59 582 582 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G # _pdbx_struct_assembly_prop.biol_id 1 _pdbx_struct_assembly_prop.type 'ABSA (A^2)' _pdbx_struct_assembly_prop.value 4410 _pdbx_struct_assembly_prop.details ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2007-12-04 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2021-11-10 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Database references' 3 3 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' database_2 2 3 'Structure model' struct_ref_seq_dif 3 3 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_struct_ref_seq_dif.details' 4 3 'Structure model' '_struct_site.pdbx_auth_asym_id' 5 3 'Structure model' '_struct_site.pdbx_auth_comp_id' 6 3 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal MAR345dtb 'data collection' . ? 1 CNS refinement . ? 2 MOSFLM 'data reduction' . ? 3 SCALA 'data scaling' . ? 4 CNS phasing . ? 5 # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 N _pdbx_validate_rmsd_angle.auth_asym_id_1 A _pdbx_validate_rmsd_angle.auth_comp_id_1 GLY _pdbx_validate_rmsd_angle.auth_seq_id_1 78 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 CA _pdbx_validate_rmsd_angle.auth_asym_id_2 A _pdbx_validate_rmsd_angle.auth_comp_id_2 GLY _pdbx_validate_rmsd_angle.auth_seq_id_2 78 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 C _pdbx_validate_rmsd_angle.auth_asym_id_3 A _pdbx_validate_rmsd_angle.auth_comp_id_3 GLY _pdbx_validate_rmsd_angle.auth_seq_id_3 78 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 97.90 _pdbx_validate_rmsd_angle.angle_target_value 113.10 _pdbx_validate_rmsd_angle.angle_deviation -15.20 _pdbx_validate_rmsd_angle.angle_standard_deviation 2.50 _pdbx_validate_rmsd_angle.linker_flag N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 GLU A 40 ? ? -163.50 117.44 2 1 ASP A 60 ? ? -27.01 108.26 3 1 THR A 62 ? ? -58.65 -4.49 4 1 ALA A 77 ? ? -163.84 118.88 5 1 ASN A 123 ? ? -58.28 -7.60 6 1 ASP A 144 ? ? 81.26 45.93 7 1 PRO A 224 ? ? -93.31 50.93 8 1 PHE A 259 ? ? -97.42 38.57 9 1 ALA A 260 ? ? -39.15 130.43 10 1 LYS A 261 ? ? 70.77 -17.21 11 1 SER A 305 ? ? -87.96 -159.94 # _pdbx_validate_planes.id 1 _pdbx_validate_planes.PDB_model_num 1 _pdbx_validate_planes.auth_comp_id DC _pdbx_validate_planes.auth_asym_id C _pdbx_validate_planes.auth_seq_id 409 _pdbx_validate_planes.PDB_ins_code ? _pdbx_validate_planes.label_alt_id ? _pdbx_validate_planes.rmsd 0.062 _pdbx_validate_planes.type 'SIDE CHAIN' # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 2ZCJ 'b-form double helix' 2ZCJ 'mismatched base pair' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DG 1 1_555 B DC 13 1_555 -0.083 0.106 -0.318 -8.743 -3.550 -1.849 1 C_DG402:DC433_D C 402 ? D 433 ? 19 1 1 A DA 2 1_555 B DT 12 1_555 -0.028 0.153 0.031 -5.529 -6.724 1.293 2 C_DA403:DT432_D C 403 ? D 432 ? 20 1 1 A DT 3 1_555 B DA 11 1_555 0.075 -0.021 -0.090 -2.207 -6.976 0.992 3 C_DT404:DA431_D C 404 ? D 431 ? 20 1 1 A DA 4 1_555 B DT 10 1_555 -0.201 -0.046 -0.238 8.797 3.017 1.497 4 C_DA405:DT430_D C 405 ? D 430 ? 20 1 1 A DG 5 1_555 B DC 9 1_555 -0.396 -0.140 0.258 19.089 -0.746 -4.539 5 C_DG406:DC429_D C 406 ? D 429 ? 19 1 1 A DC 6 1_555 B DG 8 1_555 0.183 -0.186 -0.824 19.996 -6.952 -4.249 6 C_DC407:DG428_D C 407 ? D 428 ? 19 1 1 A DC 8 1_555 B DG 6 1_555 -0.057 -0.074 -0.442 6.694 -11.122 1.978 7 C_DC409:DG426_D C 409 ? D 426 ? 19 1 1 A DT 9 1_555 B DA 5 1_555 -0.842 -0.352 0.147 2.643 -1.192 -3.492 8 C_DT410:DA425_D C 410 ? D 425 ? 20 1 1 A DA 10 1_555 B DT 4 1_555 0.388 0.287 0.117 4.848 -4.554 7.158 9 C_DA411:DT424_D C 411 ? D 424 ? ? ? 1 A DT 11 1_555 B DA 3 1_555 0.042 -0.292 -0.295 6.928 -10.475 -5.029 10 C_DT412:DA423_D C 412 ? D 423 ? 20 1 1 A DC 12 1_555 B DG 2 1_555 -0.441 -0.106 -1.123 29.635 -15.766 -2.131 11 C_DC413:DG422_D C 413 ? D 422 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DG 1 1_555 B DC 13 1_555 A DA 2 1_555 B DT 12 1_555 -0.060 0.086 3.139 -2.927 6.006 34.396 -0.728 -0.325 3.104 10.039 4.892 35.019 1 CC_DG402DA403:DT432DC433_DD C 402 ? D 433 ? C 403 ? D 432 ? 1 A DA 2 1_555 B DT 12 1_555 A DT 3 1_555 B DA 11 1_555 -0.151 -0.422 3.269 -1.348 4.164 30.490 -1.602 0.023 3.188 7.867 2.546 30.795 2 CC_DA403DT404:DA431DT432_DD C 403 ? D 432 ? C 404 ? D 431 ? 1 A DT 3 1_555 B DA 11 1_555 A DA 4 1_555 B DT 10 1_555 1.082 0.740 3.144 5.265 -0.642 34.226 1.340 -1.021 3.255 -1.082 -8.880 34.622 3 CC_DT404DA405:DT430DA431_DD C 404 ? D 431 ? C 405 ? D 430 ? 1 A DA 4 1_555 B DT 10 1_555 A DG 5 1_555 B DC 9 1_555 -1.744 0.276 3.077 -6.702 7.039 33.392 -0.617 1.894 3.342 11.939 11.367 34.739 4 CC_DA405DG406:DC429DT430_DD C 405 ? D 430 ? C 406 ? D 429 ? 1 A DG 5 1_555 B DC 9 1_555 A DC 6 1_555 B DG 8 1_555 1.160 -0.852 3.602 6.561 -11.067 35.149 0.384 -0.794 3.838 -17.614 -10.443 37.360 5 CC_DG406DC407:DG428DC429_DD C 406 ? D 429 ? C 407 ? D 428 ? 1 A DC 8 1_555 B DG 6 1_555 A DT 9 1_555 B DA 5 1_555 0.187 -0.032 3.534 -3.255 5.713 35.742 -0.912 -0.791 3.458 9.213 5.248 36.322 6 CC_DC409DT410:DA425DG426_DD C 409 ? D 426 ? C 410 ? D 425 ? 1 A DT 9 1_555 B DA 5 1_555 A DA 10 1_555 B DT 4 1_555 0.111 0.082 3.283 1.671 10.072 39.925 -0.983 0.025 3.212 14.465 -2.400 41.158 7 CC_DT410DA411:DT424DA425_DD C 410 ? D 425 ? C 411 ? D 424 ? 1 A DA 10 1_555 B DT 4 1_555 A DT 11 1_555 B DA 3 1_555 -0.787 -0.617 3.239 0.617 8.987 26.329 -3.352 1.780 2.858 19.036 -1.307 27.802 8 CC_DA411DT412:DA423DT424_DD C 411 ? D 424 ? C 412 ? D 423 ? 1 A DT 11 1_555 B DA 3 1_555 A DC 12 1_555 B DG 2 1_555 0.173 0.989 2.696 10.612 7.719 24.087 0.402 1.956 2.717 16.980 -23.343 27.383 9 CC_DT412DC413:DG422DA423_DD C 412 ? D 423 ? C 413 ? D 422 ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 4 S-ADENOSYL-L-HOMOCYSTEINE SAH 5 water HOH #